RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 CRIPAKQ8N1N5 446 aa13.24□□□□□ -0.29
USP3-220ENST00000561381 NEK9Q8TD19 979 aa13.24□□□□□ -0.29
USP3-220ENST00000561381 CLP1Q92989 425 aaKnown RBP13.24□□□□□ -0.29
USP3-220ENST00000561381 BRF1Q92994 677 aa13.24□□□□□ -0.29
USP3-220ENST00000561381 PABPC5Q96DU9 382 aaKnown RBP13.24□□□□□ -0.29
USP3-220ENST00000561381 JAKMIP1Q96N16 626 aaKnown RBP13.24□□□□□ -0.29
USP3-220ENST00000561381 LRFN3Q9BTN0 628 aa13.24□□□□□ -0.29
USP3-220ENST00000561381 CELF4Q9BZC1 486 aaKnown RBP13.24□□□□□ -0.29
USP3-220ENST00000561381 TMX1Q9H3N1 280 aa13.24□□□□□ -0.29
USP3-220ENST00000561381 CDHR5Q9HBB8 845 aa13.24□□□□□ -0.29
USP3-220ENST00000561381 GINS2Q9Y248 185 aa13.24□□□□□ -0.29
USP3-220ENST00000561381 SNX14Q9Y5W7 946 aa13.24□□□□□ -0.29
USP3-220ENST00000561381 MRPL42Q9Y6G3 142 aaKnown RBP13.24□□□□□ -0.29
USP3-220ENST00000561381 SMIM35A0A1B0GVV1 85 aa13.23□□□□□ -0.29
USP3-220ENST00000561381 FAM86C2PA6NEL3 165 aa13.23□□□□□ -0.29
USP3-220ENST00000561381 GRXCR2A6NFK2 248 aa13.23□□□□□ -0.29
USP3-220ENST00000561381 ZBTB42B2RXF5 422 aa13.23□□□□□ -0.29
USP3-220ENST00000561381 RB1P06400 928 aa13.23□□□□□ -0.29
USP3-220ENST00000561381 CYP3A4P08684 503 aa13.23□□□□□ -0.29
USP3-220ENST00000561381 ATP4AP20648 1035 aa13.23□□□□□ -0.29
USP3-220ENST00000561381 IBSPP21815 317 aaPredicted RBP13.23□□□□□ -0.29
USP3-220ENST00000561381 HSPA4P34932 840 aa13.23□□□□□ -0.29
USP3-220ENST00000561381 GTF2F1P35269 517 aaKnown RBP eCLIP13.23□□□□□ -0.29
USP3-220ENST00000561381 GATMP50440 423 aa13.23□□□□□ -0.29
USP3-220ENST00000561381 KRT76Q01546 638 aa13.23□□□□□ -0.29
USP3-220ENST00000561381 PAK2Q13177 524 aa13.23□□□□□ -0.29
USP3-220ENST00000561381 COL19A1Q14993 1142 aa13.23□□□□□ -0.29
USP3-220ENST00000561381 PAN2Q504Q3 1202 aaKnown RBP13.23□□□□□ -0.29
USP3-220ENST00000561381 SWSAP1Q6NVH7 229 aa13.23□□□□□ -0.29
USP3-220ENST00000561381 PDXDC2PQ6P474 469 aa13.23□□□□□ -0.29
USP3-220ENST00000561381 GJD3Q8N144 294 aa13.23□□□□□ -0.29
USP3-220ENST00000561381 RASGRP4Q8TDF6 673 aa13.23□□□□□ -0.29
USP3-220ENST00000561381 ATP8B4Q8TF62 1192 aa13.23□□□□□ -0.29
USP3-220ENST00000561381 TNPO1Q92973 898 aaKnown RBP13.23□□□□□ -0.29
USP3-220ENST00000561381 PHKBQ93100 1093 aa13.23□□□□□ -0.29
USP3-220ENST00000561381 PPP1R16BQ96T49 567 aa13.23□□□□□ -0.29
USP3-220ENST00000561381 C11orf84Q9BUA3 381 aaPredicted RBP13.23□□□□□ -0.29
USP3-220ENST00000561381 ZMYND12Q9H0C1 365 aa13.23□□□□□ -0.29
USP3-220ENST00000561381 GLT8D2Q9H1C3 349 aa13.23□□□□□ -0.29
USP3-220ENST00000561381 ALG13Q9NP73 1137 aaKnown RBP13.23□□□□□ -0.29
USP3-220ENST00000561381 C11orf16Q9NQ32 467 aa13.23□□□□□ -0.29
USP3-220ENST00000561381 ZNF302Q9NR11 478 aa13.23□□□□□ -0.29
USP3-220ENST00000561381 CLDND1Q9NY35 253 aa13.23□□□□□ -0.29
USP3-220ENST00000561381 SQORQ9Y6N5 450 aa13.23□□□□□ -0.29
USP3-220ENST00000561381 EVPLQ92817 2033 aa13.22□□□□□ -0.29
USP3-220ENST00000561381 KDM3AQ9Y4C1 1321 aa13.22□□□□□ -0.29
USP3-220ENST00000561381 CCDC196A0A1B0GTZ2 297 aa13.22□□□□□ -0.29
USP3-220ENST00000561381 ESYT2A0FGR8 921 aa13.22□□□□□ -0.29
USP3-220ENST00000561381 IPO5O00410 1097 aaKnown RBP13.22□□□□□ -0.29
USP3-220ENST00000561381 SNPHO15079 494 aa13.22□□□□□ -0.29
USP3-220ENST00000561381 HBP1O60381 514 aa13.22□□□□□ -0.29
USP3-220ENST00000561381 MGEA5O60502 916 aa13.22□□□□□ -0.29
USP3-220ENST00000561381 RPLP2P05387 115 aaKnown RBP13.22□□□□□ -0.29
USP3-220ENST00000561381 LTBRP36941 435 aa13.22□□□□□ -0.29
USP3-220ENST00000561381 SLC26A2P50443 739 aa13.22□□□□□ -0.29
USP3-220ENST00000561381 DLX2Q07687 328 aaPredicted RBP13.22□□□□□ -0.29
USP3-220ENST00000561381 HYAL1Q12794 435 aa13.22□□□□□ -0.29
USP3-220ENST00000561381 NFX1Q12986 1120 aaKnown RBP13.22□□□□□ -0.29
USP3-220ENST00000561381 CAMK1Q14012 370 aa13.22□□□□□ -0.29
USP3-220ENST00000561381 FAM160B1Q5W0V3 765 aa13.22□□□□□ -0.29
USP3-220ENST00000561381 BLOC1S2Q6QNY1 142 aa13.22□□□□□ -0.29
USP3-220ENST00000561381 TRMT1LQ7Z2T5 733 aaKnown RBP13.22□□□□□ -0.29
USP3-220ENST00000561381 NPAS4Q8IUM7 802 aa13.22□□□□□ -0.29
USP3-220ENST00000561381 KIAA0319LQ8IZA0 1049 aa13.22□□□□□ -0.29
USP3-220ENST00000561381 TMEM40Q8WWA1 233 aa13.22□□□□□ -0.29
USP3-220ENST00000561381 ZNF577Q9BSK1 485 aa13.22□□□□□ -0.29
USP3-220ENST00000561381 FTHL17Q9BXU8 183 aa13.22□□□□□ -0.29
USP3-220ENST00000561381 PLAGL2Q9UPG8 496 aa13.22□□□□□ -0.29
USP3-220ENST00000561381 NOC2LQ9Y3T9 749 aaKnown RBP13.22□□□□□ -0.29
USP3-220ENST00000561381 RWDD3Q9Y3V2 267 aa13.22□□□□□ -0.29
USP3-220ENST00000561381 KIAA1671Q9BY89 1806 aa13.21□□□□□ -0.29
USP3-220ENST00000561381 PI4K2BG5E9Z4 385 aa13.21□□□□□ -0.29
USP3-220ENST00000561381 PRPF3O43395 683 aaKnown RBP13.21□□□□□ -0.29
USP3-220ENST00000561381 RPS6KB1P23443 525 aa13.21□□□□□ -0.29
USP3-220ENST00000561381 DNAJB1P25685 340 aa13.21□□□□□ -0.29
USP3-220ENST00000561381 SSTR3P32745 418 aaPredicted RBP13.21□□□□□ -0.29
USP3-220ENST00000561381 CLUL1Q15846 466 aa13.21□□□□□ -0.29
USP3-220ENST00000561381 NTRK3Q16288 839 aa13.21□□□□□ -0.29
USP3-220ENST00000561381 PRR16Q569H4 304 aa13.21□□□□□ -0.29
USP3-220ENST00000561381 TMEM31Q5JXX7 168 aa13.21□□□□□ -0.29
USP3-220ENST00000561381 MIS18BP1Q6P0N0 1132 aa13.21□□□□□ -0.29
USP3-220ENST00000561381 CKAP2LQ8IYA6 745 aa13.21□□□□□ -0.29
USP3-220ENST00000561381 CMTR2Q8IYT2 770 aaKnown RBP13.21□□□□□ -0.29
USP3-220ENST00000561381 REXO1Q8N1G1 1221 aaKnown RBP13.21□□□□□ -0.29
USP3-220ENST00000561381 NME8Q8N427 588 aa13.21□□□□□ -0.29
USP3-220ENST00000561381 LMAN2LQ9H0V9 348 aa13.21□□□□□ -0.29
USP3-220ENST00000561381 C6orf50Q9HD87 102 aa13.21□□□□□ -0.29
USP3-220ENST00000561381 ERVK-5Q9HDB9 667 aa13.21□□□□□ -0.29
USP3-220ENST00000561381 NID2Q14112 1375 aa13.2□□□□□ -0.3
USP3-220ENST00000561381 LINC01565O15544 149 aa13.2□□□□□ -0.3
USP3-220ENST00000561381 EDIL3O43854 480 aa13.2□□□□□ -0.3
USP3-220ENST00000561381 C22orf31O95567 290 aa13.2□□□□□ -0.3
USP3-220ENST00000561381 MMP1P03956 469 aa13.2□□□□□ -0.3
USP3-220ENST00000561381 ITGB1P05556 798 aa13.2□□□□□ -0.3
USP3-220ENST00000561381 CTC1Q2NKJ3 1217 aa13.2□□□□□ -0.3
USP3-220ENST00000561381 ZNF484Q5JVG2 852 aa13.2□□□□□ -0.3
USP3-220ENST00000561381 LENG9Q96B70 501 aa13.2□□□□□ -0.3
USP3-220ENST00000561381 PLVAPQ9BX97 442 aa13.2□□□□□ -0.3
USP3-220ENST00000561381 SLC26A6Q9BXS9 759 aa13.2□□□□□ -0.3
USP3-220ENST00000561381 AGXT2Q9BYV1 514 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms