RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 RUFY4Q6ZNE9 571 aa14.55□□□□□ -0.08
NEDD8-208ENST00000560427 FAM43BQ6ZT52 329 aaPredicted RBP14.55□□□□□ -0.08
NEDD8-208ENST00000560427 TDHQ8IZJ6 230 aa14.55□□□□□ -0.08
NEDD8-208ENST00000560427 KCTD17Q8N5Z5 321 aa14.55□□□□□ -0.08
NEDD8-208ENST00000560427 TRAPPC12Q8WVT3 735 aa14.55□□□□□ -0.08
NEDD8-208ENST00000560427 AK8Q96MA6 479 aa14.55□□□□□ -0.08
NEDD8-208ENST00000560427 MTIF3Q9H2K0 278 aaKnown RBP14.55□□□□□ -0.08
NEDD8-208ENST00000560427 CYP26B1Q9NR63 512 aa14.55□□□□□ -0.08
NEDD8-208ENST00000560427 ANKEF1Q9NU02 776 aa14.55□□□□□ -0.08
NEDD8-208ENST00000560427 RGL1Q9NZL6 768 aa14.55□□□□□ -0.08
NEDD8-208ENST00000560427 WRAP73Q9P2S5 460 aaPredicted RBP14.55□□□□□ -0.08
NEDD8-208ENST00000560427 DNAH12Q6ZR08 3092 aa14.55□□□□□ -0.08
NEDD8-208ENST00000560427 DDX11L8A8MPP1 907 aa14.54□□□□□ -0.08
NEDD8-208ENST00000560427 M0QZ92 97 aa14.54□□□□□ -0.08
NEDD8-208ENST00000560427 SLC26A4O43511 780 aa14.54□□□□□ -0.08
NEDD8-208ENST00000560427 GAS2O43903 313 aaKnown RBP14.54□□□□□ -0.08
NEDD8-208ENST00000560427 F13A1P00488 732 aa14.54□□□□□ -0.08
NEDD8-208ENST00000560427 CXCL10P02778 98 aa14.54□□□□□ -0.08
NEDD8-208ENST00000560427 RFC5P40937 340 aa14.54□□□□□ -0.08
NEDD8-208ENST00000560427 MRPS6P82932 125 aaKnown RBP14.54□□□□□ -0.08
NEDD8-208ENST00000560427 CTTNQ14247 550 aaKnown RBP14.54□□□□□ -0.08
NEDD8-208ENST00000560427 KRT79Q5XKE5 535 aa14.54□□□□□ -0.08
NEDD8-208ENST00000560427 ATL3Q6DD88 541 aa14.54□□□□□ -0.08
NEDD8-208ENST00000560427 TPH2Q8IWU9 490 aa14.54□□□□□ -0.08
NEDD8-208ENST00000560427 LINC01465Q8N7H1 131 aa14.54□□□□□ -0.08
NEDD8-208ENST00000560427 SPRYD3Q8NCJ5 442 aa14.54□□□□□ -0.08
NEDD8-208ENST00000560427 SLC7A3Q8WY07 619 aa14.54□□□□□ -0.08
NEDD8-208ENST00000560427 SCLYQ96I15 445 aa14.54□□□□□ -0.08
NEDD8-208ENST00000560427 CEP170P1Q96L14 293 aa14.54□□□□□ -0.08
NEDD8-208ENST00000560427 ZNF396Q96N95 335 aaPredicted RBP14.54□□□□□ -0.08
NEDD8-208ENST00000560427 MAP7D2Q96T17 732 aa14.54□□□□□ -0.08
NEDD8-208ENST00000560427 COLQQ9Y215 455 aaPredicted RBP14.54□□□□□ -0.08
NEDD8-208ENST00000560427 SQORQ9Y6N5 450 aa14.54□□□□□ -0.08
NEDD8-208ENST00000560427 KDM3AQ9Y4C1 1321 aa14.54□□□□□ -0.08
NEDD8-208ENST00000560427 WDR81Q562E7 1941 aa14.54□□□□□ -0.08
NEDD8-208ENST00000560427 KAT6AQ92794 2004 aa14.53□□□□□ -0.08
NEDD8-208ENST00000560427 IGKV6-21A0A0C4DH24 114 aa14.53□□□□□ -0.08
NEDD8-208ENST00000560427 SPATA31C1P0DKV0 1188 aa14.53□□□□□ -0.08
NEDD8-208ENST00000560427 ACTN1P12814 892 aa14.53□□□□□ -0.08
NEDD8-208ENST00000560427 LONP1P36776 959 aaKnown RBP14.53□□□□□ -0.08
NEDD8-208ENST00000560427 CDC42EP1Q00587 391 aa14.53□□□□□ -0.08
NEDD8-208ENST00000560427 MGAT3Q09327 533 aa14.53□□□□□ -0.08
NEDD8-208ENST00000560427 MTERF2Q49AM1 385 aa14.53□□□□□ -0.08
NEDD8-208ENST00000560427 TRMT1LQ7Z2T5 733 aaKnown RBP14.53□□□□□ -0.08
NEDD8-208ENST00000560427 CATSPER3Q86XQ3 398 aa14.53□□□□□ -0.08
NEDD8-208ENST00000560427 USP38Q8NB14 1042 aa14.53□□□□□ -0.08
NEDD8-208ENST00000560427 SNX29Q8TEQ0 813 aa14.53□□□□□ -0.08
NEDD8-208ENST00000560427 DNAJB3Q8WWF6 145 aa14.53□□□□□ -0.08
NEDD8-208ENST00000560427 CCDC43Q96MW1 224 aaKnown RBP14.53□□□□□ -0.08
NEDD8-208ENST00000560427 NACC1Q96RE7 527 aa14.53□□□□□ -0.08
NEDD8-208ENST00000560427 CEP89Q96ST8 783 aa14.53□□□□□ -0.08
NEDD8-208ENST00000560427 FAM49AQ9H0Q0 323 aaPredicted RBP14.53□□□□□ -0.08
NEDD8-208ENST00000560427 TRPV2Q9Y5S1 764 aa14.53□□□□□ -0.08
NEDD8-208ENST00000560427 VWA3AA6NCI4 1184 aa14.52□□□□□ -0.09
NEDD8-208ENST00000560427 NBNO60934 754 aa14.52□□□□□ -0.09
NEDD8-208ENST00000560427 MAFO75444 373 aaPredicted RBP14.52□□□□□ -0.09
NEDD8-208ENST00000560427 MED24O75448 989 aa14.52□□□□□ -0.09
NEDD8-208ENST00000560427 BAIAP3O94812 1187 aa14.52□□□□□ -0.09
NEDD8-208ENST00000560427 BRD1O95696 1058 aa14.52□□□□□ -0.09
NEDD8-208ENST00000560427 CCT6AP40227 531 aaKnown RBP14.52□□□□□ -0.09
NEDD8-208ENST00000560427 NASPP49321 788 aaPredicted RBP14.52□□□□□ -0.09
NEDD8-208ENST00000560427 DNM2P50570 870 aa14.52□□□□□ -0.09
NEDD8-208ENST00000560427 EPHB4P54760 987 aa14.52□□□□□ -0.09
NEDD8-208ENST00000560427 PTPAQ15257 358 aa14.52□□□□□ -0.09
NEDD8-208ENST00000560427 IL17AQ16552 155 aa14.52□□□□□ -0.09
NEDD8-208ENST00000560427 TMEM240Q5SV17 173 aa14.52□□□□□ -0.09
NEDD8-208ENST00000560427 PLA2G4FQ68DD2 849 aa14.52□□□□□ -0.09
NEDD8-208ENST00000560427 EFCAB12Q6NXP0 572 aa14.52□□□□□ -0.09
NEDD8-208ENST00000560427 KIAA0319LQ8IZA0 1049 aa14.52□□□□□ -0.09
NEDD8-208ENST00000560427 METTL13Q8N6R0 699 aa14.52□□□□□ -0.09
NEDD8-208ENST00000560427 HERVK_113Q902F9 699 aa14.52□□□□□ -0.09
NEDD8-208ENST00000560427 DHX33Q9H6R0 707 aaKnown RBP14.52□□□□□ -0.09
NEDD8-208ENST00000560427 DBR1Q9UK59 544 aaKnown RBP14.52□□□□□ -0.09
NEDD8-208ENST00000560427 CDY2AQ9Y6F7 541 aa14.52□□□□□ -0.09
NEDD8-208ENST00000560427 TRIP12Q14669 1992 aaPredicted RBP14.51□□□□□ -0.09
NEDD8-208ENST00000560427 EFCAB14O75071 495 aa14.51□□□□□ -0.09
NEDD8-208ENST00000560427 DGAT1O75907 488 aa14.51□□□□□ -0.09
NEDD8-208ENST00000560427 FGBP02675 491 aa14.51□□□□□ -0.09
NEDD8-208ENST00000560427 CHRNA1P02708 482 aa14.51□□□□□ -0.09
NEDD8-208ENST00000560427 CTSHP09668 335 aa14.51□□□□□ -0.09
NEDD8-208ENST00000560427 ANP32AP39687 249 aaKnown RBP14.51□□□□□ -0.09
NEDD8-208ENST00000560427 RARRES1P49788 294 aa14.51□□□□□ -0.09
NEDD8-208ENST00000560427 POLGP54098 1239 aaPredicted RBP14.51□□□□□ -0.09
NEDD8-208ENST00000560427 MBTPS1Q14703 1052 aa14.51□□□□□ -0.09
NEDD8-208ENST00000560427 SLC39A14Q15043 492 aa14.51□□□□□ -0.09
NEDD8-208ENST00000560427 LRIT3Q3SXY7 679 aa14.51□□□□□ -0.09
NEDD8-208ENST00000560427 XKR9Q5GH70 373 aa14.51□□□□□ -0.09
NEDD8-208ENST00000560427 HYIQ5T013 277 aa14.51□□□□□ -0.09
NEDD8-208ENST00000560427 CNKSR3Q6P9H4 555 aa14.51□□□□□ -0.09
NEDD8-208ENST00000560427 C16orf59Q7L2K0 433 aa14.51□□□□□ -0.09
NEDD8-208ENST00000560427 DEFB128Q7Z7B8 93 aa14.51□□□□□ -0.09
NEDD8-208ENST00000560427 TCP11Q8WWU5 503 aa14.51□□□□□ -0.09
NEDD8-208ENST00000560427 APBB2Q92870 758 aa14.51□□□□□ -0.09
NEDD8-208ENST00000560427 ZBTB10Q96DT7 871 aa14.51□□□□□ -0.09
NEDD8-208ENST00000560427 RNPC3Q96LT9 517 aaKnown RBP14.51□□□□□ -0.09
NEDD8-208ENST00000560427 USP28Q96RU2 1077 aa14.51□□□□□ -0.09
NEDD8-208ENST00000560427 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.51□□□□□ -0.095e-9■□□□□ 8.6
NEDD8-208ENST00000560427 CELF4Q9BZC1 486 aaKnown RBP14.51□□□□□ -0.09
NEDD8-208ENST00000560427 NT5C3AQ9H0P0 336 aa14.51□□□□□ -0.09
NEDD8-208ENST00000560427 ATP6V1DQ9Y5K8 247 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms