RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-233ENST00000557529 XKR3Q5GH77 459 aa13.78□□□□□ -0.2
SHMT2-233ENST00000557529 ODR4Q5SWX8 454 aa13.78□□□□□ -0.2
SHMT2-233ENST00000557529 RGMBQ6NW40 437 aa13.78□□□□□ -0.2
SHMT2-233ENST00000557529 ARMCX5Q6P1M9 558 aa13.78□□□□□ -0.2
SHMT2-233ENST00000557529 ZNF467Q7Z7K2 595 aaPredicted RBP13.78□□□□□ -0.2
SHMT2-233ENST00000557529 PPFIBP1Q86W92 1011 aa13.78□□□□□ -0.2
SHMT2-233ENST00000557529 ZC3H3Q8IXZ2 948 aaKnown RBP13.78□□□□□ -0.2
SHMT2-233ENST00000557529 SLC17A8Q8NDX2 589 aa13.78□□□□□ -0.2
SHMT2-233ENST00000557529 CCDC112Q8NEF3 446 aa13.78□□□□□ -0.2
SHMT2-233ENST00000557529 PTPN18Q99952 460 aa13.78□□□□□ -0.2
SHMT2-233ENST00000557529 RRAGDQ9NQL2 400 aaPredicted RBP13.78□□□□□ -0.2
SHMT2-233ENST00000557529 TYW1Q9NV66 732 aaKnown RBP13.78□□□□□ -0.2
SHMT2-233ENST00000557529 TRAF3IP3Q9Y228 551 aa13.78□□□□□ -0.2
SHMT2-233ENST00000557529 PCDHB13Q9Y5F0 798 aa13.78□□□□□ -0.2
SHMT2-233ENST00000557529 IGSF9BQ9UPX0 1349 aa13.78□□□□□ -0.2
SHMT2-233ENST00000557529 A0A1W2PQC6 194 aa13.77□□□□□ -0.21
SHMT2-233ENST00000557529 SFI1A8K8P3 1242 aa13.77□□□□□ -0.21
SHMT2-233ENST00000557529 CETN3O15182 167 aa13.77□□□□□ -0.21
SHMT2-233ENST00000557529 FARP2O94887 1054 aaPredicted RBP13.77□□□□□ -0.21
SHMT2-233ENST00000557529 MYBP10242 640 aa13.77□□□□□ -0.21
SHMT2-233ENST00000557529 SKILP12757 684 aa13.77□□□□□ -0.21
SHMT2-233ENST00000557529 PRKCSHP14314 528 aaPredicted RBP13.77□□□□□ -0.21
SHMT2-233ENST00000557529 RPL13P26373 211 aaKnown RBP13.77□□□□□ -0.21
SHMT2-233ENST00000557529 ADORA2AP29274 412 aa13.77□□□□□ -0.21
SHMT2-233ENST00000557529 CASP5P51878 434 aa13.77□□□□□ -0.21
SHMT2-233ENST00000557529 SP4Q02446 784 aa13.77□□□□□ -0.21
SHMT2-233ENST00000557529 UBXN1Q04323 297 aa13.77□□□□□ -0.21
SHMT2-233ENST00000557529 MAPK7Q13164 816 aa13.77□□□□□ -0.21
SHMT2-233ENST00000557529 ARID5BQ14865 1188 aa13.77□□□□□ -0.21
SHMT2-233ENST00000557529 MAN2A1Q16706 1144 aa13.77□□□□□ -0.21
SHMT2-233ENST00000557529 ZNF792Q3KQV3 632 aa13.77□□□□□ -0.21
SHMT2-233ENST00000557529 FKBP15Q5T1M5 1219 aa13.77□□□□□ -0.21
SHMT2-233ENST00000557529 UTP14CQ5TAP6 766 aaKnown RBP13.77□□□□□ -0.21
SHMT2-233ENST00000557529 FAM160B1Q5W0V3 765 aa13.77□□□□□ -0.21
SHMT2-233ENST00000557529 METTL7BQ6UX53 244 aa13.77□□□□□ -0.21
SHMT2-233ENST00000557529 ANO5Q75V66 913 aa13.77□□□□□ -0.21
SHMT2-233ENST00000557529 ZNF720Q7Z2F6 126 aa13.77□□□□□ -0.21
SHMT2-233ENST00000557529 CCDC60Q8IWA6 550 aaPredicted RBP13.77□□□□□ -0.21
SHMT2-233ENST00000557529 KIAA1524Q8TCG1 905 aa13.77□□□□□ -0.21
SHMT2-233ENST00000557529 BCAS3Q9H6U6 928 aa13.77□□□□□ -0.21
SHMT2-233ENST00000557529 ZNF302Q9NR11 478 aa13.77□□□□□ -0.21
SHMT2-233ENST00000557529 DDX41Q9UJV9 622 aaKnown RBP13.77□□□□□ -0.21
SHMT2-233ENST00000557529 MAFBQ9Y5Q3 323 aaPredicted RBP13.77□□□□□ -0.21
SHMT2-233ENST00000557529 SRCAPQ6ZRS2 3230 aa13.77□□□□□ -0.21
SHMT2-233ENST00000557529 SYNGAP1Q96PV0 1343 aa13.77□□□□□ -0.21
SHMT2-233ENST00000557529 PASKQ96RG2 1323 aa13.77□□□□□ -0.21
SHMT2-233ENST00000557529 IGKV6D-21A0A0A0MT36 114 aa13.76□□□□□ -0.21
SHMT2-233ENST00000557529 ZNF862O60290 1169 aa13.76□□□□□ -0.21
SHMT2-233ENST00000557529 PRPF6O94906 941 aaKnown RBP13.76□□□□□ -0.21
SHMT2-233ENST00000557529 STBD1O95210 358 aa13.76□□□□□ -0.21
SHMT2-233ENST00000557529 GGPS1O95749 300 aa13.76□□□□□ -0.21
SHMT2-233ENST00000557529 PLS3P13797 630 aa13.76□□□□□ -0.21
SHMT2-233ENST00000557529 NMT1P30419 496 aaKnown RBP13.76□□□□□ -0.21
SHMT2-233ENST00000557529 INHBEP58166 350 aa13.76□□□□□ -0.21
SHMT2-233ENST00000557529 CCZ1BP86790 482 aa13.76□□□□□ -0.21
SHMT2-233ENST00000557529 CCZ1P86791 482 aaPredicted RBP13.76□□□□□ -0.21
SHMT2-233ENST00000557529 PRKCEQ02156 737 aa13.76□□□□□ -0.21
SHMT2-233ENST00000557529 CCDC40Q4G0X9 1142 aa13.76□□□□□ -0.21
SHMT2-233ENST00000557529 PLA2G4FQ68DD2 849 aa13.76□□□□□ -0.21
SHMT2-233ENST00000557529 EEPD1Q7L9B9 569 aa13.76□□□□□ -0.21
SHMT2-233ENST00000557529 SAPCD2Q86UD0 394 aa13.76□□□□□ -0.21
SHMT2-233ENST00000557529 DAW1Q8N136 415 aa13.76□□□□□ -0.21
SHMT2-233ENST00000557529 MCPH1Q8NEM0 835 aa13.76□□□□□ -0.21
SHMT2-233ENST00000557529 GOLGA5Q8TBA6 731 aa13.76□□□□□ -0.21
SHMT2-233ENST00000557529 SCFD2Q8WU76 684 aa13.76□□□□□ -0.21
SHMT2-233ENST00000557529 SEPT1Q8WYJ6 367 aa13.76□□□□□ -0.21
SHMT2-233ENST00000557529 CEP170P1Q96L14 293 aa13.76□□□□□ -0.21
SHMT2-233ENST00000557529 FIZ1Q96SL8 496 aa13.76□□□□□ -0.21
SHMT2-233ENST00000557529 NOC4LQ9BVI4 516 aaKnown RBP13.76□□□□□ -0.21
SHMT2-233ENST00000557529 MLXIPQ9HAP2 919 aa13.76□□□□□ -0.21
SHMT2-233ENST00000557529 PYCARDQ9ULZ3 195 aa13.76□□□□□ -0.21
SHMT2-233ENST00000557529 DIS3Q9Y2L1 958 aaKnown RBP13.76□□□□□ -0.21
SHMT2-233ENST00000557529 LRRC37A2A6NM11 1700 aa13.76□□□□□ -0.21
SHMT2-233ENST00000557529 GSTTP1A0A1W2PQM5 241 aa13.75□□□□□ -0.21
SHMT2-233ENST00000557529 AKR1B15C9JRZ8 316 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-233ENST00000557529 PES1O00541 588 aaKnown RBP13.75□□□□□ -0.21
SHMT2-233ENST00000557529 SORBS3O60504 671 aa13.75□□□□□ -0.21
SHMT2-233ENST00000557529 DGAT1O75907 488 aa13.75□□□□□ -0.21
SHMT2-233ENST00000557529 SLC10A3P09131 477 aa13.75□□□□□ -0.21
SHMT2-233ENST00000557529 HOXD13P35453 343 aa13.75□□□□□ -0.21
SHMT2-233ENST00000557529 NPEPPSP55786 919 aa13.75□□□□□ -0.21
SHMT2-233ENST00000557529 MARSP56192 900 aaKnown RBP13.75□□□□□ -0.21
SHMT2-233ENST00000557529 ADAM9Q13443 819 aa13.75□□□□□ -0.21
SHMT2-233ENST00000557529 TTLL4Q14679 1199 aa13.75□□□□□ -0.21
SHMT2-233ENST00000557529 NFIL3Q16649 462 aa13.75□□□□□ -0.21
SHMT2-233ENST00000557529 VWA3BQ502W6 1294 aa13.75□□□□□ -0.21
SHMT2-233ENST00000557529 ARMCX2Q7L311 632 aa13.75□□□□□ -0.21
SHMT2-233ENST00000557529 GPR142Q7Z601 462 aa13.75□□□□□ -0.21
SHMT2-233ENST00000557529 PLEKHH3Q7Z736 793 aa13.75□□□□□ -0.21
SHMT2-233ENST00000557529 AFAP1L1Q8TED9 768 aa13.75□□□□□ -0.21
SHMT2-233ENST00000557529 KIFAP3Q92845 792 aa13.75□□□□□ -0.21
SHMT2-233ENST00000557529 IQCDQ96DY2 449 aa13.75□□□□□ -0.21
SHMT2-233ENST00000557529 CCDC51Q96ER9 411 aa13.75□□□□□ -0.21
SHMT2-233ENST00000557529 ST6GALNAC4Q9H4F1 302 aa13.75□□□□□ -0.21
SHMT2-233ENST00000557529 C17orf75Q9HAS0 396 aa13.75□□□□□ -0.21
SHMT2-233ENST00000557529 POLD4Q9HCU8 107 aa13.75□□□□□ -0.21
SHMT2-233ENST00000557529 VTA1Q9NP79 307 aa13.75□□□□□ -0.21
SHMT2-233ENST00000557529 SLC5A4Q9NY91 659 aa13.75□□□□□ -0.21
SHMT2-233ENST00000557529 SEPT9Q9UHD8 586 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-233ENST00000557529 KCNG1Q9UIX4 513 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms