RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 OSGEPQ9NPF4 335 aa13.22□□□□□ -0.29
CCDC88C-211ENST00000556726 ASIC3Q9UHC3 531 aa13.22□□□□□ -0.29
CCDC88C-211ENST00000556726 FAM169AQ9Y6X4 670 aa13.22□□□□□ -0.29
CCDC88C-211ENST00000556726 NWD2Q9ULI1 1742 aa13.22□□□□□ -0.29
CCDC88C-211ENST00000556726 ITGA4P13612 1032 aa13.21□□□□□ -0.29
CCDC88C-211ENST00000556726 TMOD1P28289 359 aa13.21□□□□□ -0.29
CCDC88C-211ENST00000556726 IRAK1P51617 712 aa13.21□□□□□ -0.29
CCDC88C-211ENST00000556726 MAP2K1Q02750 393 aaPredicted RBP13.21□□□□□ -0.29
CCDC88C-211ENST00000556726 OTUD6AQ7L8S5 288 aa13.21□□□□□ -0.29
CCDC88C-211ENST00000556726 MAGOHBQ96A72 148 aaKnown RBP13.21□□□□□ -0.29
CCDC88C-211ENST00000556726 MTMR9Q96QG7 549 aa13.21□□□□□ -0.29
CCDC88C-211ENST00000556726 NAP1L4Q99733 375 aaKnown RBP13.21□□□□□ -0.29
CCDC88C-211ENST00000556726 TRPM3Q9HCF6 1732 aaPredicted RBP13.21□□□□□ -0.29
CCDC88C-211ENST00000556726 TMEM150BA6NC51 233 aa13.21□□□□□ -0.29
CCDC88C-211ENST00000556726 RASSF10A6NK89 507 aa13.21□□□□□ -0.29
CCDC88C-211ENST00000556726 FAM86B1E9PN63 330 aa13.21□□□□□ -0.29
CCDC88C-211ENST00000556726 FAM86B2P0C5J1 330 aa13.21□□□□□ -0.29
CCDC88C-211ENST00000556726 MEA1Q16626 185 aa13.21□□□□□ -0.29
CCDC88C-211ENST00000556726 GRIPAP1Q4V328 841 aa13.21□□□□□ -0.29
CCDC88C-211ENST00000556726 C2CD6Q53TS8 623 aa13.21□□□□□ -0.29
CCDC88C-211ENST00000556726 ZNF571Q7Z3V5 609 aaPredicted RBP13.21□□□□□ -0.29
CCDC88C-211ENST00000556726 SAAL1Q96ER3 474 aa13.21□□□□□ -0.29
CCDC88C-211ENST00000556726 FAM84AQ96KN4 292 aa13.21□□□□□ -0.29
CCDC88C-211ENST00000556726 NOC2LQ9Y3T9 749 aaKnown RBP13.21□□□□□ -0.29
CCDC88C-211ENST00000556726 MYH8P13535 1937 aa13.21□□□□□ -0.29
CCDC88C-211ENST00000556726 TISP43B9A030 160 aa13.21□□□□□ -0.3
CCDC88C-211ENST00000556726 PEX3P56589 373 aa13.21□□□□□ -0.3
CCDC88C-211ENST00000556726 LMBRD2Q68DH5 695 aaPredicted RBP13.21□□□□□ -0.3
CCDC88C-211ENST00000556726 WDR93Q6P2C0 686 aa13.21□□□□□ -0.3
CCDC88C-211ENST00000556726 PROM2Q8N271 834 aa13.21□□□□□ -0.3
CCDC88C-211ENST00000556726 ADAM33Q9BZ11 813 aa13.21□□□□□ -0.3
CCDC88C-211ENST00000556726 GJA3Q9Y6H8 435 aa13.21□□□□□ -0.3
CCDC88C-211ENST00000556726 EVI5O60447 810 aa13.2□□□□□ -0.3
CCDC88C-211ENST00000556726 SYF2O95926 243 aaKnown RBP13.2□□□□□ -0.3
CCDC88C-211ENST00000556726 CCDC172P0C7W6 258 aa13.2□□□□□ -0.3
CCDC88C-211ENST00000556726 GALCP54803 685 aa13.2□□□□□ -0.3
CCDC88C-211ENST00000556726 VPS72Q15906 364 aa13.2□□□□□ -0.3
CCDC88C-211ENST00000556726 EPC2Q52LR7 807 aa13.2□□□□□ -0.3
CCDC88C-211ENST00000556726 LRRC55Q6ZSA7 311 aa13.2□□□□□ -0.3
CCDC88C-211ENST00000556726 GSTA5Q7RTV2 222 aa13.2□□□□□ -0.3
CCDC88C-211ENST00000556726 LRRC45Q96CN5 670 aa13.2□□□□□ -0.3
CCDC88C-211ENST00000556726 GLT8D2Q9H1C3 349 aa13.2□□□□□ -0.3
CCDC88C-211ENST00000556726 MSH4O15457 936 aa13.2□□□□□ -0.3
CCDC88C-211ENST00000556726 PDE6BP35913 854 aa13.2□□□□□ -0.3
CCDC88C-211ENST00000556726 FBXW10Q5XX13 1052 aa13.2□□□□□ -0.3
CCDC88C-211ENST00000556726 EMBQ6PCB8 327 aa13.2□□□□□ -0.3
CCDC88C-211ENST00000556726 PPM1EQ8WY54 764 aa13.2□□□□□ -0.3
CCDC88C-211ENST00000556726 METTL14Q9HCE5 456 aaKnown RBP13.2□□□□□ -0.3
CCDC88C-211ENST00000556726 ACP6Q9NPH0 428 aa13.2□□□□□ -0.3
CCDC88C-211ENST00000556726 EML1O00423 815 aa13.2□□□□□ -0.3
CCDC88C-211ENST00000556726 CCDC38Q502W7 563 aa13.2□□□□□ -0.3
CCDC88C-211ENST00000556726 SEL1L2Q5TEA6 688 aa13.2□□□□□ -0.3
CCDC88C-211ENST00000556726 MICALCLQ6ZW33 695 aa13.2□□□□□ -0.3
CCDC88C-211ENST00000556726 NLGN1Q8N2Q7 840 aa13.2□□□□□ -0.3
CCDC88C-211ENST00000556726 CASKIN2Q8WXE0 1202 aa13.2□□□□□ -0.3
CCDC88C-211ENST00000556726 GLG1Q92896 1179 aa13.2□□□□□ -0.3
CCDC88C-211ENST00000556726 IQCDQ96DY2 449 aa13.2□□□□□ -0.3
CCDC88C-211ENST00000556726 FAM118BQ9BPY3 351 aa13.2□□□□□ -0.3
CCDC88C-211ENST00000556726 FBXL5Q9UKA1 691 aa13.2□□□□□ -0.3
CCDC88C-211ENST00000556726 MYH10P35580 1976 aa13.19□□□□□ -0.3
CCDC88C-211ENST00000556726 KIF4AO95239 1232 aa13.19□□□□□ -0.3
CCDC88C-211ENST00000556726 TMEM179Q6ZVK1 233 aa13.19□□□□□ -0.3
CCDC88C-211ENST00000556726 ANKS1AQ92625 1134 aa13.19□□□□□ -0.3
CCDC88C-211ENST00000556726 DNAJC19Q96DA6 116 aa13.19□□□□□ -0.3
CCDC88C-211ENST00000556726 CEP63Q96MT8 703 aa13.19□□□□□ -0.3
CCDC88C-211ENST00000556726 PRR12Q9ULL5 1215 aa13.19□□□□□ -0.3
CCDC88C-211ENST00000556726 USP20Q9Y2K6 914 aa13.19□□□□□ -0.3
CCDC88C-211ENST00000556726 MYH13Q9UKX3 1938 aa13.19□□□□□ -0.3
CCDC88C-211ENST00000556726 SLC16A4O15374 487 aa13.19□□□□□ -0.3
CCDC88C-211ENST00000556726 NF2P35240 595 aa13.19□□□□□ -0.3
CCDC88C-211ENST00000556726 NBPF9Q3BBW0 867 aa13.19□□□□□ -0.3
CCDC88C-211ENST00000556726 PRMT6Q96LA8 375 aaPredicted RBP13.19□□□□□ -0.3
CCDC88C-211ENST00000556726 KIFC3Q9BVG8 833 aa13.19□□□□□ -0.3
CCDC88C-211ENST00000556726 LARSQ9P2J5 1176 aaKnown RBP13.19□□□□□ -0.3
CCDC88C-211ENST00000556726 CD2APQ9Y5K6 639 aa13.19□□□□□ -0.3
CCDC88C-211ENST00000556726 AKAP11Q9UKA4 1901 aa13.19□□□□□ -0.3
CCDC88C-211ENST00000556726 hCG_1984214I3L0E3 225 aa13.19□□□□□ -0.3
CCDC88C-211ENST00000556726 TLR2O60603 784 aa13.19□□□□□ -0.3
CCDC88C-211ENST00000556726 FOSP01100 380 aaPredicted RBP13.19□□□□□ -0.3
CCDC88C-211ENST00000556726 GIT2Q14161 759 aa13.19□□□□□ -0.3
CCDC88C-211ENST00000556726 SP8Q8IXZ3 490 aa13.19□□□□□ -0.3
CCDC88C-211ENST00000556726 ARFGAP2Q8N6H7 521 aa13.19□□□□□ -0.3
CCDC88C-211ENST00000556726 ZNF713Q8N859 430 aaPredicted RBP13.19□□□□□ -0.3
CCDC88C-211ENST00000556726 THOC1Q96FV9 657 aaKnown RBP13.19□□□□□ -0.3
CCDC88C-211ENST00000556726 ZNF668Q96K58 619 aaPredicted RBP13.19□□□□□ -0.3
CCDC88C-211ENST00000556726 LXNQ9BS40 222 aa13.19□□□□□ -0.3
CCDC88C-211ENST00000556726 TBK1Q9UHD2 729 aa13.19□□□□□ -0.3
CCDC88C-211ENST00000556726 GGT7Q9UJ14 662 aa13.19□□□□□ -0.3
CCDC88C-211ENST00000556726 ALS2Q96Q42 1657 aa13.18□□□□□ -0.3
CCDC88C-211ENST00000556726 PHRF1Q9P1Y6 1649 aaKnown RBP13.18□□□□□ -0.3
CCDC88C-211ENST00000556726 BCRP11274 1271 aa13.18□□□□□ -0.3
CCDC88C-211ENST00000556726 TNNI1P19237 187 aa13.18□□□□□ -0.3
CCDC88C-211ENST00000556726 CALCOCO2Q13137 446 aa13.18□□□□□ -0.3
CCDC88C-211ENST00000556726 CC2D2BQ6DHV5 1058 aa13.18□□□□□ -0.3
CCDC88C-211ENST00000556726 PPP1R18Q6NYC8 613 aa13.18□□□□□ -0.3
CCDC88C-211ENST00000556726 KRT27Q7Z3Y8 459 aa13.18□□□□□ -0.3
CCDC88C-211ENST00000556726 METTL13Q8N6R0 699 aa13.18□□□□□ -0.3
CCDC88C-211ENST00000556726 BAP1Q92560 729 aa13.18□□□□□ -0.3
CCDC88C-211ENST00000556726 BTBD6Q96KE9 485 aa13.18□□□□□ -0.3
CCDC88C-211ENST00000556726 TEKT3Q9BXF9 490 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms