RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 GTF2IRD2BQ6EKJ0 949 aa6.18□□□□□ -1.42
CD44-236ENST00000533222 RNF111Q6ZNA4 994 aa6.18□□□□□ -1.42
CD44-236ENST00000533222 GTF2IRD2Q86UP8 949 aa6.18□□□□□ -1.42
CD44-236ENST00000533222 HSCBQ8IWL3 235 aa6.18□□□□□ -1.42
CD44-236ENST00000533222 ATP11CQ8NB49 1132 aa6.18□□□□□ -1.42
CD44-236ENST00000533222 CCDC150Q8NCX0 1101 aa6.18□□□□□ -1.42
CD44-236ENST00000533222 KIAA1524Q8TCG1 905 aa6.18□□□□□ -1.42
CD44-236ENST00000533222 TRPC4APQ8TEL6 797 aa6.18□□□□□ -1.42
CD44-236ENST00000533222 KCNN1Q92952 543 aa6.18□□□□□ -1.42
CD44-236ENST00000533222 GSDMAQ96QA5 445 aa6.18□□□□□ -1.42
CD44-236ENST00000533222 ALPK1Q96QP1 1244 aa6.18□□□□□ -1.42
CD44-236ENST00000533222 PAGR1Q9BTK6 254 aa6.18□□□□□ -1.42
CD44-236ENST00000533222 CDADC1Q9BWV3 514 aa6.18□□□□□ -1.42
CD44-236ENST00000533222 BRD8Q9H0E9 1235 aa6.18□□□□□ -1.42
CD44-236ENST00000533222 KCND1Q9NSA2 647 aa6.18□□□□□ -1.42
CD44-236ENST00000533222 ARGLU1Q9NWB6 273 aaPredicted RBP6.18□□□□□ -1.42
CD44-236ENST00000533222 C6orf203Q9P0P8 240 aaPredicted RBP6.18□□□□□ -1.42
CD44-236ENST00000533222 RABL2BQ9UNT1 228 aa6.18□□□□□ -1.42
CD44-236ENST00000533222 ZNF281Q9Y2X9 895 aa6.18□□□□□ -1.42
CD44-236ENST00000533222 TMED5Q9Y3A6 229 aa6.18□□□□□ -1.42
CD44-236ENST00000533222 SQORQ9Y6N5 450 aa6.18□□□□□ -1.42
CD44-236ENST00000533222 SSU72P8A0A1W2PR75 194 aa6.17□□□□□ -1.42
CD44-236ENST00000533222 CCDC162PA2VCL2 907 aa6.17□□□□□ -1.42
CD44-236ENST00000533222 TBKBP1A7MCY6 615 aa6.17□□□□□ -1.42
CD44-236ENST00000533222 ABLIM1O14639 778 aa6.17□□□□□ -1.42
CD44-236ENST00000533222 TTI1O43156 1089 aa6.17□□□□□ -1.42
CD44-236ENST00000533222 ADCY3O60266 1144 aa6.17□□□□□ -1.42
CD44-236ENST00000533222 MTA2O94776 668 aa6.17□□□□□ -1.42
CD44-236ENST00000533222 EFEMP2O95967 443 aa6.17□□□□□ -1.42
CD44-236ENST00000533222 IGHDP01880 384 aa6.17□□□□□ -1.42
CD44-236ENST00000533222 CAPNS1P04632 268 aa6.17□□□□□ -1.42
CD44-236ENST00000533222 ZGLP1P0C6A0 271 aa6.17□□□□□ -1.42
CD44-236ENST00000533222 COL6A1P12109 1028 aa6.17□□□□□ -1.42
CD44-236ENST00000533222 H2AFXP16104 143 aaPredicted RBP6.17□□□□□ -1.42
CD44-236ENST00000533222 HK2P52789 917 aa6.17□□□□□ -1.42
CD44-236ENST00000533222 ERVFC1P60507 584 aa6.17□□□□□ -1.42
CD44-236ENST00000533222 AMPD2Q01433 879 aa6.17□□□□□ -1.42
CD44-236ENST00000533222 ROR2Q01974 943 aaKnown RBP6.17□□□□□ -1.42
CD44-236ENST00000533222 GRB10Q13322 594 aa6.17□□□□□ -1.42
CD44-236ENST00000533222 CCDC14Q49A88 953 aa6.17□□□□□ -1.42
CD44-236ENST00000533222 BOLA3Q53S33 107 aa6.17□□□□□ -1.42
CD44-236ENST00000533222 RRP12Q5JTH9 1297 aaKnown RBP6.17□□□□□ -1.42
CD44-236ENST00000533222 FOXB2Q5VYV0 432 aa6.17□□□□□ -1.42
CD44-236ENST00000533222 RNF168Q8IYW5 571 aaPredicted RBP6.17□□□□□ -1.42
CD44-236ENST00000533222 LILRB2Q8N423 598 aa6.17□□□□□ -1.42
CD44-236ENST00000533222 PI4K2BQ8TCG2 481 aa6.17□□□□□ -1.42
CD44-236ENST00000533222 NEK9Q8TD19 979 aa6.17□□□□□ -1.42
CD44-236ENST00000533222 PMM1Q92871 262 aa6.17□□□□□ -1.42
CD44-236ENST00000533222 THOC1Q96FV9 657 aaKnown RBP6.17□□□□□ -1.42
CD44-236ENST00000533222 MAML3Q96JK9 1138 aa6.17□□□□□ -1.42
CD44-236ENST00000533222 RNPC3Q96LT9 517 aaKnown RBP6.17□□□□□ -1.42
CD44-236ENST00000533222 CDC5LQ99459 802 aaKnown RBP6.17□□□□□ -1.42
CD44-236ENST00000533222 NACA2Q9H009 215 aa6.17□□□□□ -1.42
CD44-236ENST00000533222 EPN3Q9H201 632 aa6.17□□□□□ -1.42
CD44-236ENST00000533222 ERVK13-1Q9NX77 482 aa6.17□□□□□ -1.42
CD44-236ENST00000533222 MAFFQ9ULX9 164 aa6.17□□□□□ -1.42
CD44-236ENST00000533222 MTUS2Q5JR59 1369 aa6.17□□□□□ -1.42
CD44-236ENST00000533222 GOLGA6L10A0A0M3HER8 536 aa6.16□□□□□ -1.42
CD44-236ENST00000533222 A6NNZ2 444 aa6.16□□□□□ -1.42
CD44-236ENST00000533222 NOP56O00567 594 aaKnown RBP6.16□□□□□ -1.42
CD44-236ENST00000533222 AURKAO14965 403 aa6.16□□□□□ -1.42
CD44-236ENST00000533222 USP2O75604 605 aaPredicted RBP6.16□□□□□ -1.42
CD44-236ENST00000533222 STAM2O75886 525 aa6.16□□□□□ -1.42
CD44-236ENST00000533222 PENKP01210 267 aaPredicted RBP6.16□□□□□ -1.42
CD44-236ENST00000533222 FAM153BP0C7A2 387 aa6.16□□□□□ -1.42
CD44-236ENST00000533222 FERP16591 822 aa6.16□□□□□ -1.42
CD44-236ENST00000533222 MCM3P25205 808 aa6.16□□□□□ -1.42
CD44-236ENST00000533222 CSE1LP55060 971 aaKnown RBP6.16□□□□□ -1.42
CD44-236ENST00000533222 PHEXP78562 749 aa6.16□□□□□ -1.42
CD44-236ENST00000533222 POU4F1Q01851 419 aa6.16□□□□□ -1.42
CD44-236ENST00000533222 SCRN1Q12765 414 aa6.16□□□□□ -1.42
CD44-236ENST00000533222 IFRD2Q12894 506 aaPredicted RBP6.16□□□□□ -1.42
CD44-236ENST00000533222 LAMB3Q13751 1172 aa6.16□□□□□ -1.42
CD44-236ENST00000533222 WTAPQ15007 396 aa6.16□□□□□ -1.42
CD44-236ENST00000533222 PLCB4Q15147 1175 aa6.16□□□□□ -1.42
CD44-236ENST00000533222 TUBB8Q3ZCM7 444 aa6.16□□□□□ -1.42
CD44-236ENST00000533222 EFCAB2Q5VUJ9 269 aa6.16□□□□□ -1.42
CD44-236ENST00000533222 FAAH2Q6GMR7 532 aa6.16□□□□□ -1.42
CD44-236ENST00000533222 SLC23A3Q6PIS1 610 aa6.16□□□□□ -1.42
CD44-236ENST00000533222 MTHFD1LQ6UB35 978 aa6.16□□□□□ -1.42
CD44-236ENST00000533222 LRSAM1Q6UWE0 723 aa6.16□□□□□ -1.42
CD44-236ENST00000533222 PACS1Q6VY07 963 aa6.16□□□□□ -1.42
CD44-236ENST00000533222 C11orf96Q7Z7L8 435 aa6.16□□□□□ -1.42
CD44-236ENST00000533222 OR8K1Q8NGG5 319 aa6.16□□□□□ -1.42
CD44-236ENST00000533222 PPP1R14CQ8TAE6 165 aa6.16□□□□□ -1.42
CD44-236ENST00000533222 ANKRD27Q96NW4 1050 aa6.16□□□□□ -1.42
CD44-236ENST00000533222 ALS2CR12Q96Q35 445 aa6.16□□□□□ -1.42
CD44-236ENST00000533222 SPATA9Q9BWV2 254 aa6.16□□□□□ -1.42
CD44-236ENST00000533222 NKX2-4Q9H2Z4 354 aa6.16□□□□□ -1.42
CD44-236ENST00000533222 VCX3BQ9H321 246 aa6.16□□□□□ -1.42
CD44-236ENST00000533222 TMX1Q9H3N1 280 aa6.16□□□□□ -1.42
CD44-236ENST00000533222 RC3H2Q9HBD1 1191 aaKnown RBP6.16□□□□□ -1.42
CD44-236ENST00000533222 CIDEBQ9UHD4 219 aa6.16□□□□□ -1.42
CD44-236ENST00000533222 TMEM59LQ9UK28 342 aa6.16□□□□□ -1.42
CD44-236ENST00000533222 ITM2BQ9Y287 266 aa6.16□□□□□ -1.42
CD44-236ENST00000533222 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.16□□□□□ -1.42
CD44-236ENST00000533222 TMEM94Q12767 1356 aa6.16□□□□□ -1.42
CD44-236ENST00000533222 GAPVD1Q14C86 1478 aa6.15□□□□□ -1.42
CD44-236ENST00000533222 TARSL2A2RTX5 802 aaKnown RBP6.15□□□□□ -1.42
CD44-236ENST00000533222 TMEM221A6NGB7 291 aa6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms