RNA–Protein interactions for RNA: ENST00000533018.1

PCF11-206, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-206ENST00000533018 AGXT2Q9BYV1 514 aa20.19■□□□□ 0.82
PCF11-206ENST00000533018 RC3H2Q9HBD1 1191 aaKnown RBP20.19■□□□□ 0.82
PCF11-206ENST00000533018 PCDHA10Q9Y5I2 948 aa20.19■□□□□ 0.82
PCF11-206ENST00000533018 COL1A2P08123 1366 aa20.19■□□□□ 0.82
PCF11-206ENST00000533018 GRM6O15303 877 aa20.18■□□□□ 0.82
PCF11-206ENST00000533018 RPS6KA5O75582 802 aa20.18■□□□□ 0.82
PCF11-206ENST00000533018 IFNAR1P17181 557 aa20.18■□□□□ 0.82
PCF11-206ENST00000533018 ATP4AP20648 1035 aa20.18■□□□□ 0.82
PCF11-206ENST00000533018 NTRK3Q16288 839 aa20.18■□□□□ 0.82
PCF11-206ENST00000533018 RUFY3Q7L099 469 aa20.18■□□□□ 0.82
PCF11-206ENST00000533018 SMAP1Q8IYB5 467 aaPredicted RBP20.18■□□□□ 0.82
PCF11-206ENST00000533018 TRIM22Q8IYM9 498 aa20.18■□□□□ 0.82
PCF11-206ENST00000533018 KIAA0319LQ8IZA0 1049 aa20.18■□□□□ 0.82
PCF11-206ENST00000533018 BBXQ8WY36 941 aaPredicted RBP20.18■□□□□ 0.82
PCF11-206ENST00000533018 CLP1Q92989 425 aaKnown RBP20.18■□□□□ 0.82
PCF11-206ENST00000533018 CLDND1Q9NY35 253 aa20.18■□□□□ 0.82
PCF11-206ENST00000533018 GABBR1Q9UBS5 961 aa20.18■□□□□ 0.82
PCF11-206ENST00000533018 KDM3AQ9Y4C1 1321 aa20.18■□□□□ 0.82
PCF11-206ENST00000533018 WDR81Q562E7 1941 aa20.17■□□□□ 0.82
PCF11-206ENST00000533018 DENND3A2RUS2 1198 aa20.17■□□□□ 0.82
PCF11-206ENST00000533018 SSRP1Q08945 709 aaKnown RBP20.17■□□□□ 0.82
PCF11-206ENST00000533018 PABPC5Q96DU9 382 aaKnown RBP20.17■□□□□ 0.82
PCF11-206ENST00000533018 EPHX3Q9H6B9 360 aa20.17■□□□□ 0.82
PCF11-206ENST00000533018 CDHR5Q9HBB8 845 aa20.17■□□□□ 0.82
PCF11-206ENST00000533018 ALG13Q9NP73 1137 aaKnown RBP20.17■□□□□ 0.82
PCF11-206ENST00000533018 NOC2LQ9Y3T9 749 aaKnown RBP20.17■□□□□ 0.82
PCF11-206ENST00000533018 MAFBQ9Y5Q3 323 aaPredicted RBP20.17■□□□□ 0.82
PCF11-206ENST00000533018 CYP46A1Q9Y6A2 500 aa20.17■□□□□ 0.82
PCF11-206ENST00000533018 MRPL42Q9Y6G3 142 aaKnown RBP20.17■□□□□ 0.82
PCF11-206ENST00000533018 ATG2AQ2TAZ0 1938 aa20.16■□□□□ 0.82
PCF11-206ENST00000533018 CPLX1O14810 134 aa20.16■□□□□ 0.82
PCF11-206ENST00000533018 LINC00271P0C7V0 271 aa20.16■□□□□ 0.82
PCF11-206ENST00000533018 IL9P15248 144 aa20.16■□□□□ 0.82
PCF11-206ENST00000533018 SSTR3P32745 418 aaPredicted RBP20.16■□□□□ 0.82
PCF11-206ENST00000533018 KIZQ2M2Z5 673 aa20.16■□□□□ 0.82
PCF11-206ENST00000533018 ODR4Q5SWX8 454 aa20.16■□□□□ 0.82
PCF11-206ENST00000533018 CMTR2Q8IYT2 770 aaKnown RBP20.16■□□□□ 0.82
PCF11-206ENST00000533018 LARP6Q9BRS8 491 aaKnown RBP20.16■□□□□ 0.82
PCF11-206ENST00000533018 PLVAPQ9BX97 442 aa20.16■□□□□ 0.82
PCF11-206ENST00000533018 LMAN2LQ9H0V9 348 aa20.16■□□□□ 0.82
PCF11-206ENST00000533018 TMX1Q9H3N1 280 aa20.16■□□□□ 0.82
PCF11-206ENST00000533018 RAPGEFL1Q9UHV5 662 aa20.16■□□□□ 0.82
PCF11-206ENST00000533018 CEP131Q9UPN4 1083 aa20.16■□□□□ 0.82
PCF11-206ENST00000533018 PCDHB7Q9Y5E2 793 aa20.16■□□□□ 0.82
PCF11-206ENST00000533018 KIAA1671Q9BY89 1806 aa20.16■□□□□ 0.82
PCF11-206ENST00000533018 WDR64B1ANS9 1081 aa20.15■□□□□ 0.82
PCF11-206ENST00000533018 ZBTB42B2RXF5 422 aa20.15■□□□□ 0.82
PCF11-206ENST00000533018 GPR182O15218 404 aa20.15■□□□□ 0.82
PCF11-206ENST00000533018 CHMP2AO43633 222 aa20.15■□□□□ 0.82
PCF11-206ENST00000533018 C22orf31O95567 290 aa20.15■□□□□ 0.82
PCF11-206ENST00000533018 VTNP04004 478 aa20.15■□□□□ 0.82
PCF11-206ENST00000533018 CIITAP33076 1130 aa20.15■□□□□ 0.82
PCF11-206ENST00000533018 STK3Q13188 491 aa20.15■□□□□ 0.82
PCF11-206ENST00000533018 TOB2Q14106 344 aaPredicted RBP20.15■□□□□ 0.82
PCF11-206ENST00000533018 PUS10Q3MIT2 529 aaKnown RBP20.15■□□□□ 0.82
PCF11-206ENST00000533018 SPOUT1Q5T280 376 aaKnown RBP20.15■□□□□ 0.82
PCF11-206ENST00000533018 NEK9Q8TD19 979 aa20.15■□□□□ 0.82
PCF11-206ENST00000533018 OSMRQ99650 979 aa20.15■□□□□ 0.82
PCF11-206ENST00000533018 IGFLR1Q9H665 355 aa20.15■□□□□ 0.82
PCF11-206ENST00000533018 ZSWIM6Q9HCJ5 1215 aa20.15■□□□□ 0.82
PCF11-206ENST00000533018 SH3GLB2Q9NR46 395 aa20.15■□□□□ 0.82
PCF11-206ENST00000533018 ST3GAL5Q9UNP4 418 aa20.15■□□□□ 0.82
PCF11-206ENST00000533018 C5orf42Q9H799 3197 aa20.15■□□□□ 0.82
PCF11-206ENST00000533018 MSH4O15457 936 aa20.14■□□□□ 0.81
PCF11-206ENST00000533018 NCK2O43639 380 aa20.14■□□□□ 0.81
PCF11-206ENST00000533018 SARSP49591 514 aaKnown RBP20.14■□□□□ 0.81
PCF11-206ENST00000533018 EVCP57679 992 aa20.14■□□□□ 0.81
PCF11-206ENST00000533018 FAM178BQ8IXR5 827 aa20.14■□□□□ 0.81
PCF11-206ENST00000533018 TMEM40Q8WWA1 233 aa20.14■□□□□ 0.81
PCF11-206ENST00000533018 FAM167AQ96KS9 214 aa20.14■□□□□ 0.81
PCF11-206ENST00000533018 ADAM2Q99965 735 aa20.14■□□□□ 0.81
PCF11-206ENST00000533018 ERVK-5Q9HDB9 667 aa20.14■□□□□ 0.81
PCF11-206ENST00000533018 DISC1Q9NRI5 854 aa20.14■□□□□ 0.81
PCF11-206ENST00000533018 PLAGL2Q9UPG8 496 aa20.14■□□□□ 0.81
PCF11-206ENST00000533018 AKT3Q9Y243 479 aa20.14■□□□□ 0.81
PCF11-206ENST00000533018 GRXCR2A6NFK2 248 aa20.13■□□□□ 0.81
PCF11-206ENST00000533018 MGEA5O60502 916 aa20.13■□□□□ 0.81
PCF11-206ENST00000533018 GAS7O60861 476 aa20.13■□□□□ 0.81
PCF11-206ENST00000533018 TMOD1P28289 359 aa20.13■□□□□ 0.81
PCF11-206ENST00000533018 GATMP50440 423 aa20.13■□□□□ 0.81
PCF11-206ENST00000533018 USP11P51784 963 aa20.13■□□□□ 0.81
PCF11-206ENST00000533018 CLCN3P51790 818 aa20.13■□□□□ 0.81
PCF11-206ENST00000533018 CRYBB1P53674 252 aaPredicted RBP20.13■□□□□ 0.81
PCF11-206ENST00000533018 EFCAB12Q6NXP0 572 aa20.13■□□□□ 0.81
PCF11-206ENST00000533018 CPLX2Q6PUV4 134 aaKnown RBP20.13■□□□□ 0.81
PCF11-206ENST00000533018 GJD3Q8N144 294 aa20.13■□□□□ 0.81
PCF11-206ENST00000533018 CRIPAKQ8N1N5 446 aa20.13■□□□□ 0.81
PCF11-206ENST00000533018 TBCKQ8TEA7 893 aa20.13■□□□□ 0.81
PCF11-206ENST00000533018 LENG9Q96B70 501 aa20.13■□□□□ 0.81
PCF11-206ENST00000533018 TEKT3Q9BXF9 490 aa20.13■□□□□ 0.81
PCF11-206ENST00000533018 UPF3BQ9BZI7 483 aaKnown RBP20.13■□□□□ 0.81
PCF11-206ENST00000533018 CD320Q9NPF0 282 aa20.13■□□□□ 0.81
PCF11-206ENST00000533018 NRBP2Q9NSY0 501 aa20.13■□□□□ 0.81
PCF11-206ENST00000533018 RNF216Q9NWF9 866 aaPredicted RBP20.13■□□□□ 0.81
PCF11-206ENST00000533018 FAM50BQ9Y247 325 aa20.13■□□□□ 0.81
PCF11-206ENST00000533018 MAGEB2O15479 319 aa20.12■□□□□ 0.81
PCF11-206ENST00000533018 MMP1P03956 469 aa20.12■□□□□ 0.81
PCF11-206ENST00000533018 NEFLP07196 543 aa20.12■□□□□ 0.81
PCF11-206ENST00000533018 CLUL1Q15846 466 aa20.12■□□□□ 0.81
PCF11-206ENST00000533018 LRCH2Q5VUJ6 765 aa20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms