RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 PKN1Q16512 942 aa16.69■□□□□ 0.26
VPS28-215ENST00000531924 SPOUT1Q5T280 376 aaKnown RBP16.69■□□□□ 0.26
VPS28-215ENST00000531924 FAM43BQ6ZT52 329 aaPredicted RBP16.69■□□□□ 0.26
VPS28-215ENST00000531924 KIAA0319LQ8IZA0 1049 aa16.69■□□□□ 0.26
VPS28-215ENST00000531924 FBXL16Q8N461 479 aa16.69■□□□□ 0.26
VPS28-215ENST00000531924 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.69■□□□□ 0.26
VPS28-215ENST00000531924 RASGRP4Q8TDF6 673 aa16.69■□□□□ 0.26
VPS28-215ENST00000531924 LINC01599Q8WXQ3 324 aa16.69■□□□□ 0.26
VPS28-215ENST00000531924 BBXQ8WY36 941 aaPredicted RBP16.69■□□□□ 0.26
VPS28-215ENST00000531924 PPP2R3CQ969Q6 453 aa16.69■□□□□ 0.26
VPS28-215ENST00000531924 ZNF689Q96CS4 500 aaPredicted RBP16.69■□□□□ 0.26
VPS28-215ENST00000531924 CYP46A1Q9Y6A2 500 aa16.69■□□□□ 0.26
VPS28-215ENST00000531924 WDR64B1ANS9 1081 aa16.68■□□□□ 0.26
VPS28-215ENST00000531924 GPR182O15218 404 aa16.68■□□□□ 0.26
VPS28-215ENST00000531924 GRM6O15303 877 aa16.68■□□□□ 0.26
VPS28-215ENST00000531924 IFNAR1P17181 557 aa16.68■□□□□ 0.26
VPS28-215ENST00000531924 PDIA3P30101 505 aaKnown RBP16.68■□□□□ 0.26
VPS28-215ENST00000531924 CPLX2Q6PUV4 134 aaKnown RBP16.68■□□□□ 0.26
VPS28-215ENST00000531924 RTN4RL1Q86UN2 441 aaPredicted RBP16.68■□□□□ 0.26
VPS28-215ENST00000531924 GJD3Q8N144 294 aa16.68■□□□□ 0.26
VPS28-215ENST00000531924 CRYGNQ8WXF5 182 aa16.68■□□□□ 0.26
VPS28-215ENST00000531924 FAM167AQ96KS9 214 aa16.68■□□□□ 0.26
VPS28-215ENST00000531924 PPP1R16BQ96T49 567 aa16.68■□□□□ 0.26
VPS28-215ENST00000531924 EPHX3Q9H6B9 360 aa16.68■□□□□ 0.26
VPS28-215ENST00000531924 NCOA5Q9HCD5 579 aaKnown RBP16.68■□□□□ 0.26
VPS28-215ENST00000531924 ALG13Q9NP73 1137 aaKnown RBP16.68■□□□□ 0.26
VPS28-215ENST00000531924 VPS54Q9P1Q0 977 aa16.68■□□□□ 0.26
VPS28-215ENST00000531924 GABBR1Q9UBS5 961 aa16.68■□□□□ 0.26
VPS28-215ENST00000531924 MAFBQ9Y5Q3 323 aaPredicted RBP16.68■□□□□ 0.26
VPS28-215ENST00000531924 MRPL42Q9Y6G3 142 aaKnown RBP16.68■□□□□ 0.26
VPS28-215ENST00000531924 NID2Q14112 1375 aa16.67■□□□□ 0.26
VPS28-215ENST00000531924 GRXCR2A6NFK2 248 aa16.67■□□□□ 0.26
VPS28-215ENST00000531924 IL9P15248 144 aa16.67■□□□□ 0.26
VPS28-215ENST00000531924 TMOD1P28289 359 aa16.67■□□□□ 0.26
VPS28-215ENST00000531924 SARSP49591 514 aaKnown RBP16.67■□□□□ 0.26
VPS28-215ENST00000531924 SSRP1Q08945 709 aaKnown RBP16.67■□□□□ 0.26
VPS28-215ENST00000531924 NAALADL2Q58DX5 795 aa16.67■□□□□ 0.26
VPS28-215ENST00000531924 TMEM31Q5JXX7 168 aa16.67■□□□□ 0.26
VPS28-215ENST00000531924 RUFY3Q7L099 469 aa16.67■□□□□ 0.26
VPS28-215ENST00000531924 FAM178BQ8IXR5 827 aa16.67■□□□□ 0.26
VPS28-215ENST00000531924 NEK9Q8TD19 979 aa16.67■□□□□ 0.26
VPS28-215ENST00000531924 MAP7D2Q96T17 732 aa16.67■□□□□ 0.26
VPS28-215ENST00000531924 ADAM2Q99965 735 aa16.67■□□□□ 0.26
VPS28-215ENST00000531924 IGFLR1Q9H665 355 aa16.67■□□□□ 0.26
VPS28-215ENST00000531924 RC3H2Q9HBD1 1191 aaKnown RBP16.67■□□□□ 0.26
VPS28-215ENST00000531924 SH3GLB2Q9NR46 395 aa16.67■□□□□ 0.26
VPS28-215ENST00000531924 C1orf112Q9NSG2 853 aa16.67■□□□□ 0.26
VPS28-215ENST00000531924 NRBP2Q9NSY0 501 aa16.67■□□□□ 0.26
VPS28-215ENST00000531924 ST3GAL5Q9UNP4 418 aa16.67■□□□□ 0.26
VPS28-215ENST00000531924 NOC2LQ9Y3T9 749 aaKnown RBP16.67■□□□□ 0.26
VPS28-215ENST00000531924 ADAMTS3O15072 1205 aa16.66■□□□□ 0.26
VPS28-215ENST00000531924 MAGEB2O15479 319 aa16.66■□□□□ 0.26
VPS28-215ENST00000531924 GAS7O60861 476 aa16.66■□□□□ 0.26
VPS28-215ENST00000531924 CIITAP33076 1130 aa16.66■□□□□ 0.26
VPS28-215ENST00000531924 USP11P51784 963 aa16.66■□□□□ 0.26
VPS28-215ENST00000531924 CRYBB1P53674 252 aaPredicted RBP16.66■□□□□ 0.26
VPS28-215ENST00000531924 KIZQ2M2Z5 673 aa16.66■□□□□ 0.26
VPS28-215ENST00000531924 P2RX5Q93086 422 aa16.66■□□□□ 0.26
VPS28-215ENST00000531924 OSMRQ99650 979 aa16.66■□□□□ 0.26
VPS28-215ENST00000531924 AGXT2Q9BYV1 514 aa16.66■□□□□ 0.26
VPS28-215ENST00000531924 C22orf23Q9BZE7 217 aa16.66■□□□□ 0.26
VPS28-215ENST00000531924 TMX1Q9H3N1 280 aa16.66■□□□□ 0.26
VPS28-215ENST00000531924 ERVK-5Q9HDB9 667 aa16.66■□□□□ 0.26
VPS28-215ENST00000531924 AAASQ9NRG9 546 aa16.66■□□□□ 0.26
VPS28-215ENST00000531924 DISC1Q9NRI5 854 aa16.66■□□□□ 0.26
VPS28-215ENST00000531924 PLAGL2Q9UPG8 496 aa16.66■□□□□ 0.26
VPS28-215ENST00000531924 AKT3Q9Y243 479 aa16.66■□□□□ 0.26
VPS28-215ENST00000531924 CHMP2AO43633 222 aa16.65■□□□□ 0.26
VPS28-215ENST00000531924 C22orf31O95567 290 aa16.65■□□□□ 0.26
VPS28-215ENST00000531924 MMP1P03956 469 aa16.65■□□□□ 0.26
VPS28-215ENST00000531924 VTNP04004 478 aa16.65■□□□□ 0.26
VPS28-215ENST00000531924 NEFLP07196 543 aa16.65■□□□□ 0.26
VPS28-215ENST00000531924 ATP4AP20648 1035 aa16.65■□□□□ 0.26
VPS28-215ENST00000531924 NTRK3Q16288 839 aa16.65■□□□□ 0.26
VPS28-215ENST00000531924 LRCH2Q5VUJ6 765 aa16.65■□□□□ 0.26
VPS28-215ENST00000531924 SLC24A5Q71RS6 500 aa16.65■□□□□ 0.26
VPS28-215ENST00000531924 SCLT1Q96NL6 688 aa16.65■□□□□ 0.26
VPS28-215ENST00000531924 TEKT3Q9BXF9 490 aa16.65■□□□□ 0.26
VPS28-215ENST00000531924 CDHR5Q9HBB8 845 aa16.65■□□□□ 0.26
VPS28-215ENST00000531924 ZSWIM6Q9HCJ5 1215 aa16.65■□□□□ 0.26
VPS28-215ENST00000531924 RGS18Q9NS28 235 aa16.65■□□□□ 0.26
VPS28-215ENST00000531924 RAPGEFL1Q9UHV5 662 aa16.65■□□□□ 0.26
VPS28-215ENST00000531924 PCDHB12Q9Y5F1 795 aa16.65■□□□□ 0.26
VPS28-215ENST00000531924 TBKBP1A7MCY6 615 aa16.64■□□□□ 0.25
VPS28-215ENST00000531924 ZBTB42B2RXF5 422 aa16.64■□□□□ 0.25
VPS28-215ENST00000531924 EPB41L2O43491 1005 aaKnown RBP16.64■□□□□ 0.25
VPS28-215ENST00000531924 OATP04181 439 aa16.64■□□□□ 0.25
VPS28-215ENST00000531924 LINC00271P0C7V0 271 aa16.64■□□□□ 0.25
VPS28-215ENST00000531924 SFNP31947 248 aa16.64■□□□□ 0.25
VPS28-215ENST00000531924 GATMP50440 423 aa16.64■□□□□ 0.25
VPS28-215ENST00000531924 JAK3P52333 1124 aa16.64■□□□□ 0.25
VPS28-215ENST00000531924 EVCP57679 992 aa16.64■□□□□ 0.25
VPS28-215ENST00000531924 HYAL1Q12794 435 aa16.64■□□□□ 0.25
VPS28-215ENST00000531924 CLUL1Q15846 466 aa16.64■□□□□ 0.25
VPS28-215ENST00000531924 EFCAB12Q6NXP0 572 aa16.64■□□□□ 0.25
VPS28-215ENST00000531924 ZNF710Q8N1W2 664 aa16.64■□□□□ 0.25
VPS28-215ENST00000531924 KLHL23Q8NBE8 558 aa16.64■□□□□ 0.25
VPS28-215ENST00000531924 MICAL1Q8TDZ2 1067 aa16.64■□□□□ 0.25
VPS28-215ENST00000531924 RIT2Q99578 217 aa16.64■□□□□ 0.25
VPS28-215ENST00000531924 ATP6V0A4Q9HBG4 840 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms