RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 IKBKBO14920 756 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 GYG2O15488 501 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 GPC4O75487 556 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 BAIAP3O94812 1187 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 ECEL1O95672 775 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 CLUP10909 449 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 MSR1P21757 451 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 CCNCP24863 283 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 PIK3CBP42338 1070 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 NT5C2P49902 561 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 CLCN2P51788 898 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 PMS2P54278 862 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 ALDH18A1P54886 795 aaKnown RBP3.83□□□□□ -1.8
USP53-205ENST00000509769 SLC12A2P55011 1212 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 SNX17Q15036 470 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 TTC39AQ5SRH9 613 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 AGBL2Q5U5Z8 902 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 JADE1Q6IE81 842 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 PLEKHA7Q6IQ23 1121 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 XKRXQ6PP77 449 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 SPATA21Q7Z572 469 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 POLNQ7Z5Q5 900 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 RNF135Q8IUD6 432 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 C10orf107Q8IVU9 208 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 ZNF555Q8NEP9 628 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 ERLEC1Q96DZ1 483 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 XPO6Q96QU8 1125 aaKnown RBP3.83□□□□□ -1.8
USP53-205ENST00000509769 LBHD1Q9BQE6 289 aaPredicted RBP3.83□□□□□ -1.8
USP53-205ENST00000509769 KIFC1Q9BW19 673 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 AASDHPPTQ9NRN7 309 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 MCUBQ9NWR8 336 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 NSMCE4AQ9NXX6 385 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 ZKSCAN7Q9P0L1 754 aaPredicted RBP3.83□□□□□ -1.8
USP53-205ENST00000509769 NRBP1Q9UHY1 535 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 CDV3Q9UKY7 258 aaKnown RBP3.83□□□□□ -1.8
USP53-205ENST00000509769 RTL9Q8NET4 1388 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 SPATA31A3Q5VYP0 1347 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 TRIM75PA6NK02 468 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 CENPXA8MT69 81 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 BTBD18B2RXH4 712 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 B4DLN1 442 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 GOLGA8SH3BPF8 625 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 O00370 1275 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 SPTLC2O15270 562 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 POLR2DO15514 142 aaKnown RBP3.83□□□□□ -1.8
USP53-205ENST00000509769 CUTAO60888 179 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 FKBP6O75344 327 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 PDHA1P08559 390 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 SLFN14P0C7P3 912 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 PSMC3P17980 439 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 ABCB4P21439 1286 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 STAT5AP42229 794 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 STAT5BP51692 787 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 FANCCQ00597 558 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 ZNF658Q5TYW1 1059 aaPredicted RBP3.83□□□□□ -1.8
USP53-205ENST00000509769 RSRC2Q7L4I2 434 aaKnown RBP3.83□□□□□ -1.8
USP53-205ENST00000509769 PRUNE1Q86TP1 453 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 CKAP2LQ8IYA6 745 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 ZNF713Q8N859 430 aaPredicted RBP3.83□□□□□ -1.8
USP53-205ENST00000509769 PIK3C3Q8NEB9 887 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 SHCBP1Q8NEM2 672 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 NEK9Q8TD19 979 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 INPP5DQ92835 1189 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 MRPL48Q96GC5 212 aaKnown RBP3.83□□□□□ -1.8
USP53-205ENST00000509769 CEP95Q96GE4 821 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 FAM213AQ9BRX8 229 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 KLHL25Q9H0H3 589 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 PANK3Q9H999 370 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 SCN3BQ9NY72 215 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 SMARCAL1Q9NZC9 954 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 STK17AQ9UEE5 414 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 WARS2Q9UGM6 360 aaKnown RBP3.83□□□□□ -1.8
USP53-205ENST00000509769 WDR90Q96KV7 1748 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 NSD2O96028 1365 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 A0A1W2PRG6 482 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 FAM177BA6PVY3 158 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 F8W810 466 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 SNPHO15079 494 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 HAUS5O94927 633 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 ZBTB7AO95365 584 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 FOSP01100 380 aaPredicted RBP3.82□□□□□ -1.8
USP53-205ENST00000509769 S100A6P06703 90 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 AKAP5P24588 427 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 IARSP41252 1262 aaKnown RBP3.82□□□□□ -1.8
USP53-205ENST00000509769 SERPINH1P50454 418 aaKnown RBP3.82□□□□□ -1.8
USP53-205ENST00000509769 RAD23BP54727 409 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 PUDPQ08623 228 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 MMRN1Q13201 1228 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 ART3Q13508 389 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 GRAMD1BQ3KR37 738 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 DGKKQ5KSL6 1271 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 TMEM154Q6P9G4 183 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 TXNDC11Q6PKC3 985 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 SLF2Q8IX21 1173 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 SIX6OS1Q8N1H7 587 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 RIBC1Q8N443 379 aaPredicted RBP3.82□□□□□ -1.8
USP53-205ENST00000509769 FBXL13Q8NEE6 735 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 L3MBTL2Q969R5 705 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 ALKBH8Q96BT7 664 aaKnown RBP3.82□□□□□ -1.8
USP53-205ENST00000509769 PRPF18Q99633 342 aaKnown RBP3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms