RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 ADCY1Q08828 1119 aa8.45□□□□□ -1.06
USP40-213ENST00000483216 KANK2Q63ZY3 851 aa8.45□□□□□ -1.06
USP40-213ENST00000483216 LRSAM1Q6UWE0 723 aa8.45□□□□□ -1.06
USP40-213ENST00000483216 FAM124AQ86V42 546 aa8.45□□□□□ -1.06
USP40-213ENST00000483216 KLHL36Q8N4N3 616 aa8.45□□□□□ -1.06
USP40-213ENST00000483216 WDR48Q8TAF3 677 aa8.45□□□□□ -1.06
USP40-213ENST00000483216 TOMM22Q9NS69 142 aa8.45□□□□□ -1.06
USP40-213ENST00000483216 FBXO10Q9UK96 956 aa8.45□□□□□ -1.06
USP40-213ENST00000483216 OTOL1A6NHN0 477 aaPredicted RBP8.44□□□□□ -1.06
USP40-213ENST00000483216 TGM5O43548 720 aa8.44□□□□□ -1.06
USP40-213ENST00000483216 MAFO75444 373 aaPredicted RBP8.44□□□□□ -1.06
USP40-213ENST00000483216 FKBP9O95302 570 aa8.44□□□□□ -1.06
USP40-213ENST00000483216 PRLP01236 227 aa8.44□□□□□ -1.06
USP40-213ENST00000483216 INHBBP09529 407 aa8.44□□□□□ -1.06
USP40-213ENST00000483216 BPIP17213 487 aa8.44□□□□□ -1.06
USP40-213ENST00000483216 ADCYAP1R1P41586 468 aa8.44□□□□□ -1.06
USP40-213ENST00000483216 IL2P60568 153 aa8.44□□□□□ -1.06
USP40-213ENST00000483216 SMAD3P84022 425 aaKnown RBP8.44□□□□□ -1.06
USP40-213ENST00000483216 NFATC3Q12968 1075 aa8.44□□□□□ -1.06
USP40-213ENST00000483216 WDR72Q3MJ13 1102 aa8.44□□□□□ -1.06
USP40-213ENST00000483216 ESRP1Q6NXG1 681 aaKnown RBP8.44□□□□□ -1.06
USP40-213ENST00000483216 Q6ZUG5 572 aa8.44□□□□□ -1.06
USP40-213ENST00000483216 TTLL10Q6ZVT0 673 aa8.44□□□□□ -1.06
USP40-213ENST00000483216 FKBP9P1Q75LS8 142 aa8.44□□□□□ -1.06
USP40-213ENST00000483216 FRMD5Q7Z6J6 570 aa8.44□□□□□ -1.06
USP40-213ENST00000483216 MBD6Q96DN6 1003 aa8.44□□□□□ -1.06
USP40-213ENST00000483216 AJUBAQ96IF1 538 aa8.44□□□□□ -1.06
USP40-213ENST00000483216 MAML3Q96JK9 1138 aa8.44□□□□□ -1.06
USP40-213ENST00000483216 GPR101Q96P66 508 aaPredicted RBP8.44□□□□□ -1.06
USP40-213ENST00000483216 BARX1Q9HBU1 254 aaPredicted RBP8.44□□□□□ -1.06
USP40-213ENST00000483216 SPTLC3Q9NUV7 552 aa8.44□□□□□ -1.06
USP40-213ENST00000483216 USP40Q9NVE5 1235 aa8.44□□□□□ -1.06
USP40-213ENST00000483216 RAPGEFL1Q9UHV5 662 aa8.44□□□□□ -1.06
USP40-213ENST00000483216 SBNO2Q9Y2G9 1366 aa8.44□□□□□ -1.06
USP40-213ENST00000483216 UBA6A0AVT1 1052 aaPredicted RBP8.43□□□□□ -1.06
USP40-213ENST00000483216 CUTAO60888 179 aa8.43□□□□□ -1.06
USP40-213ENST00000483216 POLD1P28340 1107 aa8.43□□□□□ -1.06
USP40-213ENST00000483216 LRRC32Q14392 662 aa8.43□□□□□ -1.06
USP40-213ENST00000483216 TTC38Q5R3I4 469 aa8.43□□□□□ -1.06
USP40-213ENST00000483216 GPR158Q5T848 1215 aa8.43□□□□□ -1.06
USP40-213ENST00000483216 REXO1L1PQ8IX06 675 aa8.43□□□□□ -1.06
USP40-213ENST00000483216 UBR7Q8N806 425 aa8.43□□□□□ -1.06
USP40-213ENST00000483216 USP7Q93009 1102 aa8.43□□□□□ -1.06
USP40-213ENST00000483216 KATNBL1Q9H079 304 aa8.43□□□□□ -1.06
USP40-213ENST00000483216 ADAM29Q9UKF5 820 aa8.43□□□□□ -1.06
USP40-213ENST00000483216 ZEB2O60315 1214 aa8.42□□□□□ -1.06
USP40-213ENST00000483216 APEX1P27695 318 aaKnown RBP8.42□□□□□ -1.06
USP40-213ENST00000483216 PHC1P78364 1004 aa8.42□□□□□ -1.06
USP40-213ENST00000483216 ROM1Q03395 351 aa8.42□□□□□ -1.06
USP40-213ENST00000483216 TOP3AQ13472 1001 aaPredicted RBP8.42□□□□□ -1.06
USP40-213ENST00000483216 BORAQ6PGQ7 559 aa8.42□□□□□ -1.06
USP40-213ENST00000483216 C11orf74Q86VG3 221 aa8.42□□□□□ -1.06
USP40-213ENST00000483216 AFAP1L2Q8N4X5 818 aa8.42□□□□□ -1.06
USP40-213ENST00000483216 ZMAT4Q9H898 229 aa8.42□□□□□ -1.06
USP40-213ENST00000483216 EMC7Q9NPA0 242 aa8.42□□□□□ -1.06
USP40-213ENST00000483216 HOXA5P20719 270 aa8.41□□□□□ -1.06
USP40-213ENST00000483216 CD40P25942 277 aa8.41□□□□□ -1.06
USP40-213ENST00000483216 CD83Q01151 205 aa8.41□□□□□ -1.06
USP40-213ENST00000483216 SLC6A3Q01959 620 aa8.41□□□□□ -1.06
USP40-213ENST00000483216 STRA8Q7Z7C7 330 aa8.41□□□□□ -1.06
USP40-213ENST00000483216 PHYKPLQ8IUZ5 450 aa8.41□□□□□ -1.06
USP40-213ENST00000483216 ZDHHC14Q8IZN3 488 aa8.41□□□□□ -1.06
USP40-213ENST00000483216 TTC1Q99614 292 aa8.41□□□□□ -1.06
USP40-213ENST00000483216 IFT22Q9H7X7 185 aa8.41□□□□□ -1.06
USP40-213ENST00000483216 LSP1P33241 339 aa8.4□□□□□ -1.06
USP40-213ENST00000483216 STRN3Q13033 797 aa8.4□□□□□ -1.06
USP40-213ENST00000483216 CT47A1Q5JQC4 288 aaPredicted RBP8.4□□□□□ -1.06
USP40-213ENST00000483216 ZFYVE27Q5T4F4 411 aa8.4□□□□□ -1.06
USP40-213ENST00000483216 TMEM200BQ69YZ2 307 aa8.4□□□□□ -1.06
USP40-213ENST00000483216 LGI4Q8N135 537 aa8.4□□□□□ -1.06
USP40-213ENST00000483216 TUBGCP5Q96RT8 1024 aa8.4□□□□□ -1.06
USP40-213ENST00000483216 ZDHHC5Q9C0B5 715 aa8.4□□□□□ -1.06
USP40-213ENST00000483216 SPC25Q9HBM1 224 aa8.4□□□□□ -1.06
USP40-213ENST00000483216 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.4□□□□□ -1.06
USP40-213ENST00000483216 A0A0G2JNJ9 132 aa8.39□□□□□ -1.07
USP40-213ENST00000483216 NEMP1O14524 444 aa8.39□□□□□ -1.07
USP40-213ENST00000483216 DNAJC6O75061 913 aa8.39□□□□□ -1.07
USP40-213ENST00000483216 CSF2RBP32927 897 aa8.39□□□□□ -1.07
USP40-213ENST00000483216 ETV4P43268 484 aa8.39□□□□□ -1.07
USP40-213ENST00000483216 RGS3P49796 1198 aa8.39□□□□□ -1.07
USP40-213ENST00000483216 MOGSQ13724 837 aa8.39□□□□□ -1.07
USP40-213ENST00000483216 EIF4HQ15056 248 aaKnown RBP8.39□□□□□ -1.07
USP40-213ENST00000483216 TERF2Q15554 542 aa8.39□□□□□ -1.07
USP40-213ENST00000483216 RNF187Q5TA31 235 aaPredicted RBP8.39□□□□□ -1.07
USP40-213ENST00000483216 GRAMD4Q6IC98 578 aa8.39□□□□□ -1.07
USP40-213ENST00000483216 SLFN12LQ6IEE8 588 aa8.39□□□□□ -1.07
USP40-213ENST00000483216 IFNL2Q8IZJ0 200 aa8.39□□□□□ -1.07
USP40-213ENST00000483216 C7orf31Q8N865 590 aa8.39□□□□□ -1.07
USP40-213ENST00000483216 ZNF610Q8N9Z0 462 aa8.39□□□□□ -1.07
USP40-213ENST00000483216 RTF1Q92541 710 aaKnown RBP8.39□□□□□ -1.07
USP40-213ENST00000483216 USP36Q9P275 1121 aaKnown RBP8.39□□□□□ -1.07
USP40-213ENST00000483216 Q9UFV3 132 aa8.39□□□□□ -1.07
USP40-213ENST00000483216 ZDHHC9Q9Y397 364 aa8.39□□□□□ -1.07
USP40-213ENST00000483216 BRINP1O60477 761 aa8.38□□□□□ -1.07
USP40-213ENST00000483216 ADCY8P40145 1251 aa8.38□□□□□ -1.07
USP40-213ENST00000483216 MAP3K12Q12852 859 aa8.38□□□□□ -1.07
USP40-213ENST00000483216 ATP13A4Q4VNC1 1196 aa8.38□□□□□ -1.07
USP40-213ENST00000483216 TIGD7Q6NT04 549 aaPredicted RBP8.38□□□□□ -1.07
USP40-213ENST00000483216 OTOP2Q7RTS6 562 aa8.38□□□□□ -1.07
USP40-213ENST00000483216 KBTBD2Q8IY47 623 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms