RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 LETM2Q2VYF4 491 aa24.55■■□□□ 1.52
COL9A3-211ENST00000477612 PHF6Q8IWS0 365 aaKnown RBP eCLIP24.55■■□□□ 1.52
COL9A3-211ENST00000477612 CKAP2LQ8IYA6 745 aa24.55■■□□□ 1.52
COL9A3-211ENST00000477612 NAP1L4Q99733 375 aaKnown RBP24.55■■□□□ 1.52
COL9A3-211ENST00000477612 KCNMB3Q9NPA1 279 aa24.55■■□□□ 1.52
COL9A3-211ENST00000477612 NLRC5Q86WI3 1866 aa24.55■■□□□ 1.52
COL9A3-211ENST00000477612 SLC37A4O43826 429 aa24.54■■□□□ 1.52
COL9A3-211ENST00000477612 EARS2Q5JPH6 523 aaKnown RBP24.54■■□□□ 1.52
COL9A3-211ENST00000477612 PIK3AP1Q6ZUJ8 805 aa24.54■■□□□ 1.52
COL9A3-211ENST00000477612 FAM20AQ96MK3 541 aa24.54■■□□□ 1.52
COL9A3-211ENST00000477612 NRBP2Q9NSY0 501 aa24.54■■□□□ 1.52
COL9A3-211ENST00000477612 PRRC2BQ5JSZ5 2229 aaKnown RBP24.53■■□□□ 1.52
COL9A3-211ENST00000477612 EPOPA6NHQ4 379 aa24.53■■□□□ 1.52
COL9A3-211ENST00000477612 ENPP3O14638 875 aa24.53■■□□□ 1.52
COL9A3-211ENST00000477612 TBX3O15119 743 aa24.53■■□□□ 1.52
COL9A3-211ENST00000477612 MAGEB2O15479 319 aa24.53■■□□□ 1.52
COL9A3-211ENST00000477612 JAK2O60674 1132 aa24.53■■□□□ 1.52
COL9A3-211ENST00000477612 KRT2P35908 639 aa24.53■■□□□ 1.52
COL9A3-211ENST00000477612 ERVK-21P61565 698 aa24.53■■□□□ 1.52
COL9A3-211ENST00000477612 MIER3Q7Z3K6 550 aa24.53■■□□□ 1.52
COL9A3-211ENST00000477612 REV3LO60673 3130 aa24.53■■□□□ 1.52
COL9A3-211ENST00000477612 RALGAPA2Q2PPJ7 1873 aa24.53■■□□□ 1.52
COL9A3-211ENST00000477612 COL4A4P53420 1690 aaPredicted RBP24.53■■□□□ 1.52
COL9A3-211ENST00000477612 LINC01553A4QN01 128 aa24.52■■□□□ 1.52
COL9A3-211ENST00000477612 CHMP2AO43633 222 aa24.52■■□□□ 1.52
COL9A3-211ENST00000477612 MMP1P03956 469 aa24.52■■□□□ 1.52
COL9A3-211ENST00000477612 OATP04181 439 aa24.52■■□□□ 1.52
COL9A3-211ENST00000477612 TMEM62Q0P6H9 643 aa24.52■■□□□ 1.52
COL9A3-211ENST00000477612 NR5A1Q13285 461 aa24.52■■□□□ 1.52
COL9A3-211ENST00000477612 UGCGQ16739 394 aa24.52■■□□□ 1.52
COL9A3-211ENST00000477612 FAM117BQ6P1L5 589 aa24.52■■□□□ 1.52
COL9A3-211ENST00000477612 SPRED2Q7Z698 418 aa24.52■■□□□ 1.52
COL9A3-211ENST00000477612 LINC01465Q8N7H1 131 aa24.52■■□□□ 1.52
COL9A3-211ENST00000477612 ARNTL2Q8WYA1 636 aa24.52■■□□□ 1.52
COL9A3-211ENST00000477612 ZSCAN31Q96LW9 406 aaPredicted RBP24.52■■□□□ 1.52
COL9A3-211ENST00000477612 FTHL17Q9BXU8 183 aa24.52■■□□□ 1.52
COL9A3-211ENST00000477612 CERS4Q9HA82 394 aa24.52■■□□□ 1.52
COL9A3-211ENST00000477612 BRMS1Q9HCU9 246 aa24.52■■□□□ 1.52
COL9A3-211ENST00000477612 RFXAPO00287 272 aa24.51■■□□□ 1.51
COL9A3-211ENST00000477612 STBD1O95210 358 aa24.51■■□□□ 1.51
COL9A3-211ENST00000477612 IGFBP4P22692 258 aa24.51■■□□□ 1.51
COL9A3-211ENST00000477612 CD52P31358 61 aa24.51■■□□□ 1.51
COL9A3-211ENST00000477612 PRKCEQ02156 737 aa24.51■■□□□ 1.51
COL9A3-211ENST00000477612 PPP2R5CQ13362 524 aa24.51■■□□□ 1.51
COL9A3-211ENST00000477612 TARBP2Q15633 366 aaKnown RBP24.51■■□□□ 1.51
COL9A3-211ENST00000477612 TGS1Q96RS0 853 aaKnown RBP24.51■■□□□ 1.51
COL9A3-211ENST00000477612 LLPHQ9BRT6 129 aaKnown RBP24.51■■□□□ 1.51
COL9A3-211ENST00000477612 NIFKQ9BYG3 293 aaKnown RBP24.51■■□□□ 1.51
COL9A3-211ENST00000477612 PADI3Q9ULW8 664 aa24.51■■□□□ 1.51
COL9A3-211ENST00000477612 MTCH2Q9Y6C9 303 aa24.51■■□□□ 1.51
COL9A3-211ENST00000477612 CCNT1O60563 726 aaKnown RBP24.5■■□□□ 1.51
COL9A3-211ENST00000477612 LPXNO60711 386 aa24.5■■□□□ 1.51
COL9A3-211ENST00000477612 KRT40Q6A162 431 aa24.5■■□□□ 1.51
COL9A3-211ENST00000477612 RTN4RL1Q86UN2 441 aaPredicted RBP24.5■■□□□ 1.51
COL9A3-211ENST00000477612 HAS1Q92839 578 aa24.5■■□□□ 1.51
COL9A3-211ENST00000477612 VAV3Q9UKW4 847 aa24.5■■□□□ 1.51
COL9A3-211ENST00000477612 TRMT1LQ7Z2T5 733 aaKnown RBP24.49■■□□□ 1.51
COL9A3-211ENST00000477612 CRIPAKQ8N1N5 446 aa24.49■■□□□ 1.51
COL9A3-211ENST00000477612 ZNF710Q8N1W2 664 aa24.49■■□□□ 1.51
COL9A3-211ENST00000477612 IL27Q8NEV9 243 aa24.49■■□□□ 1.51
COL9A3-211ENST00000477612 LINC01599Q8WXQ3 324 aa24.49■■□□□ 1.51
COL9A3-211ENST00000477612 CEP89Q96ST8 783 aa24.49■■□□□ 1.51
COL9A3-211ENST00000477612 CDHR5Q9HBB8 845 aa24.49■■□□□ 1.51
COL9A3-211ENST00000477612 RC3H2Q9HBD1 1191 aaKnown RBP24.49■■□□□ 1.51
COL9A3-211ENST00000477612 SH2B1Q9NRF2 756 aaPredicted RBP24.49■■□□□ 1.51
COL9A3-211ENST00000477612 LMCD1Q9NZU5 365 aa24.49■■□□□ 1.51
COL9A3-211ENST00000477612 FAM205CA6NFA0 338 aa24.48■■□□□ 1.51
COL9A3-211ENST00000477612 BTBD18B2RXH4 712 aa24.48■■□□□ 1.51
COL9A3-211ENST00000477612 GPR32O75388 356 aa24.48■■□□□ 1.51
COL9A3-211ENST00000477612 UPP2O95045 317 aa24.48■■□□□ 1.51
COL9A3-211ENST00000477612 CRYBB1P53674 252 aaPredicted RBP24.48■■□□□ 1.51
COL9A3-211ENST00000477612 GRB10Q13322 594 aa24.48■■□□□ 1.51
COL9A3-211ENST00000477612 XKR3Q5GH77 459 aa24.48■■□□□ 1.51
COL9A3-211ENST00000477612 DIS3L2Q8IYB7 885 aaKnown RBP24.48■■□□□ 1.51
COL9A3-211ENST00000477612 SAMD11Q96NU1 681 aa24.48■■□□□ 1.51
COL9A3-211ENST00000477612 SUGCTQ9HAC7 445 aa24.48■■□□□ 1.51
COL9A3-211ENST00000477612 EML1O00423 815 aa24.47■■□□□ 1.51
COL9A3-211ENST00000477612 GTPBP6O43824 516 aaPredicted RBP24.47■■□□□ 1.51
COL9A3-211ENST00000477612 PAK2Q13177 524 aa24.47■■□□□ 1.51
COL9A3-211ENST00000477612 TRIM29Q14134 588 aa24.47■■□□□ 1.51
COL9A3-211ENST00000477612 ODR4Q5SWX8 454 aa24.47■■□□□ 1.51
COL9A3-211ENST00000477612 EFCAB12Q6NXP0 572 aa24.47■■□□□ 1.51
COL9A3-211ENST00000477612 CCDC83Q8IWF9 413 aa24.47■■□□□ 1.51
COL9A3-211ENST00000477612 TMEM40Q8WWA1 233 aa24.47■■□□□ 1.51
COL9A3-211ENST00000477612 ZNF689Q96CS4 500 aaPredicted RBP24.47■■□□□ 1.51
COL9A3-211ENST00000477612 YME1L1Q96TA2 773 aa24.47■■□□□ 1.51
COL9A3-211ENST00000477612 TSPYL2Q9H2G4 693 aaPredicted RBP24.47■■□□□ 1.51
COL9A3-211ENST00000477612 TMX1Q9H3N1 280 aa24.47■■□□□ 1.51
COL9A3-211ENST00000477612 ERVK-5Q9HDB9 667 aa24.47■■□□□ 1.51
COL9A3-211ENST00000477612 NOC2LQ9Y3T9 749 aaKnown RBP24.47■■□□□ 1.51
COL9A3-211ENST00000477612 TMOD1P28289 359 aa24.46■■□□□ 1.51
COL9A3-211ENST00000477612 PSMC5P62195 406 aa24.46■■□□□ 1.51
COL9A3-211ENST00000477612 POTEDQ86YR6 584 aa24.46■■□□□ 1.51
COL9A3-211ENST00000477612 METTL13Q8N6R0 699 aa24.46■■□□□ 1.51
COL9A3-211ENST00000477612 IGKV6-21A0A0C4DH24 114 aa24.45■■□□□ 1.5
COL9A3-211ENST00000477612 RPS6KA5O75582 802 aa24.45■■□□□ 1.5
COL9A3-211ENST00000477612 VTNP04004 478 aa24.45■■□□□ 1.5
COL9A3-211ENST00000477612 CLCN3P51790 818 aa24.45■■□□□ 1.5
COL9A3-211ENST00000477612 HMGN5P82970 282 aaKnown RBP24.45■■□□□ 1.5
COL9A3-211ENST00000477612 SPIRE1Q08AE8 756 aa24.45■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms