RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 KRT76Q01546 638 aa13.92□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 BTG3Q14201 252 aaPredicted RBP13.92□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 NAALADL2Q58DX5 795 aa13.92□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 FAM160B1Q5W0V3 765 aa13.92□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 PTCRAQ6ISU1 281 aaPredicted RBP13.92□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 SWSAP1Q6NVH7 229 aa13.92□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 BLOC1S2Q6QNY1 142 aa13.92□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 REXO1Q8N1G1 1221 aaKnown RBP13.92□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 LINC01465Q8N7H1 131 aa13.92□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 TMEM40Q8WWA1 233 aa13.92□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 PHKBQ93100 1093 aa13.92□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 LRFN3Q9BTN0 628 aa13.92□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 RNF26Q9BY78 433 aaPredicted RBP13.92□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 C6orf50Q9HD87 102 aa13.92□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 ZNF302Q9NR11 478 aa13.92□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 NOC2LQ9Y3T9 749 aaKnown RBP13.92□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 MRPL42Q9Y6G3 142 aaKnown RBP13.92□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 C19orf67A6NJJ6 358 aa13.91□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 DDX39AO00148 427 aaKnown RBP13.91□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 MGEA5O60502 916 aa13.91□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 GPR32O75388 356 aa13.91□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 C22orf31O95567 290 aa13.91□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 MMP1P03956 469 aa13.91□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 DNAJB1P25685 340 aa13.91□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 GNA11P29992 359 aa13.91□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 FAM189BP81408 668 aa13.91□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 SETQ01105 290 aaPredicted RBP13.91□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 HYAL1Q12794 435 aa13.91□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 PAK2Q13177 524 aa13.91□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 MIS18BP1Q6P0N0 1132 aa13.91□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 PDXDC2PQ6P474 469 aa13.91□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 SMAP1Q8IYB5 467 aaPredicted RBP13.91□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 SPPL3Q8TCT6 385 aa13.91□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 CCDC12Q8WUD4 166 aaPredicted RBP13.91□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 BBXQ8WY36 941 aaPredicted RBP13.91□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 ZNF577Q9BSK1 485 aa13.91□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 RGS18Q9NS28 235 aa13.91□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 ARIH1Q9Y4X5 557 aaPredicted RBP13.91□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 PCDHA10Q9Y5I2 948 aa13.91□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 PLXNA4Q9HCM2 1894 aa13.91□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 C9IYK1 514 aa13.9□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 H3BQ06 376 aaPredicted RBP13.9□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 M0QZ92 97 aa13.9□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 BACH1O14867 736 aa13.9□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 ITGB1P05556 798 aa13.9□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 STAG3L1P0CL83 205 aa13.9□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 SARSP49591 514 aaKnown RBP13.9□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 USP11P51784 963 aa13.9□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 DLX2Q07687 328 aaPredicted RBP13.9□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 TOB2Q14106 344 aaPredicted RBP13.9□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 DSC3Q14574 896 aa13.9□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 TMEM266Q2M3C6 531 aa13.9□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 GJD3Q8N144 294 aa13.9□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 RASGRP4Q8TDF6 673 aa13.9□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 ZSWIM6Q9HCJ5 1215 aa13.9□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 ALG13Q9NP73 1137 aaKnown RBP13.9□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 SH3GLB2Q9NR46 395 aa13.9□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 M0R2N6 131 aa13.89□□□□□ -0.19
MSH5-SAPCD1-205ENST00000476085 ZNF862O60290 1169 aa13.89□□□□□ -0.19
MSH5-SAPCD1-205ENST00000476085 PSMA5P28066 241 aa13.89□□□□□ -0.19
MSH5-SAPCD1-205ENST00000476085 GTF2F1P35269 517 aaKnown RBP eCLIP13.89□□□□□ -0.192e-9■■■■□ 21.1
MSH5-SAPCD1-205ENST00000476085 GATMP50440 423 aa13.89□□□□□ -0.19
MSH5-SAPCD1-205ENST00000476085 CRYBB1P53674 252 aaPredicted RBP13.89□□□□□ -0.19
MSH5-SAPCD1-205ENST00000476085 FGD1P98174 961 aa13.89□□□□□ -0.19
MSH5-SAPCD1-205ENST00000476085 CACNB1Q02641 598 aaPredicted RBP13.89□□□□□ -0.19
MSH5-SAPCD1-205ENST00000476085 ADAM15Q13444 863 aa13.89□□□□□ -0.19
MSH5-SAPCD1-205ENST00000476085 PRR16Q569H4 304 aa13.89□□□□□ -0.19
MSH5-SAPCD1-205ENST00000476085 B3GNT9Q6UX72 402 aa13.89□□□□□ -0.19
MSH5-SAPCD1-205ENST00000476085 BICD2Q8TD16 824 aa13.89□□□□□ -0.19
MSH5-SAPCD1-205ENST00000476085 UIMC1Q96RL1 719 aa13.89□□□□□ -0.19
MSH5-SAPCD1-205ENST00000476085 PRKAG3Q9UGI9 489 aa13.89□□□□□ -0.19
MSH5-SAPCD1-205ENST00000476085 NAP1L2Q9ULW6 460 aaPredicted RBP13.89□□□□□ -0.19
MSH5-SAPCD1-205ENST00000476085 ST3GAL5Q9UNP4 418 aa13.89□□□□□ -0.19
MSH5-SAPCD1-205ENST00000476085 CYP3A7-CYP3A51PA0A087WV96 503 aa13.88□□□□□ -0.19
MSH5-SAPCD1-205ENST00000476085 MSH4O15457 936 aa13.88□□□□□ -0.19
MSH5-SAPCD1-205ENST00000476085 RPS6KA5O75582 802 aa13.88□□□□□ -0.19
MSH5-SAPCD1-205ENST00000476085 REC8O95072 547 aa13.88□□□□□ -0.19
MSH5-SAPCD1-205ENST00000476085 PSAPP07602 524 aa13.88□□□□□ -0.19
MSH5-SAPCD1-205ENST00000476085 CYP3A7P24462 503 aa13.88□□□□□ -0.19
MSH5-SAPCD1-205ENST00000476085 ZP2Q05996 745 aa13.88□□□□□ -0.19
MSH5-SAPCD1-205ENST00000476085 NPY5RQ15761 445 aa13.88□□□□□ -0.19
MSH5-SAPCD1-205ENST00000476085 TMEM31Q5JXX7 168 aa13.88□□□□□ -0.19
MSH5-SAPCD1-205ENST00000476085 SLC24A5Q71RS6 500 aa13.88□□□□□ -0.19
MSH5-SAPCD1-205ENST00000476085 RUFY3Q7L099 469 aa13.88□□□□□ -0.19
MSH5-SAPCD1-205ENST00000476085 FAM228AQ86W67 206 aa13.88□□□□□ -0.19
MSH5-SAPCD1-205ENST00000476085 KLHL23Q8NBE8 558 aa13.88□□□□□ -0.19
MSH5-SAPCD1-205ENST00000476085 SLC5A5Q92911 643 aa13.88□□□□□ -0.19
MSH5-SAPCD1-205ENST00000476085 MSLNLQ96KJ4 702 aa13.88□□□□□ -0.19
MSH5-SAPCD1-205ENST00000476085 MBOAT7Q96N66 472 aa13.88□□□□□ -0.19
MSH5-SAPCD1-205ENST00000476085 RIT2Q99578 217 aa13.88□□□□□ -0.19
MSH5-SAPCD1-205ENST00000476085 ADAM2Q99965 735 aa13.88□□□□□ -0.19
MSH5-SAPCD1-205ENST00000476085 ADAMTS10Q9H324 1103 aa13.88□□□□□ -0.19
MSH5-SAPCD1-205ENST00000476085 NCOA5Q9HCD5 579 aaKnown RBP13.88□□□□□ -0.19
MSH5-SAPCD1-205ENST00000476085 CLDND1Q9NY35 253 aa13.88□□□□□ -0.19
MSH5-SAPCD1-205ENST00000476085 VPS54Q9P1Q0 977 aa13.88□□□□□ -0.19
MSH5-SAPCD1-205ENST00000476085 GABBR1Q9UBS5 961 aa13.88□□□□□ -0.19
MSH5-SAPCD1-205ENST00000476085 GPR182O15218 404 aa13.87□□□□□ -0.19
MSH5-SAPCD1-205ENST00000476085 MAGEB2O15479 319 aa13.87□□□□□ -0.19
MSH5-SAPCD1-205ENST00000476085 PPFIA3O75145 1194 aa13.87□□□□□ -0.19
MSH5-SAPCD1-205ENST00000476085 TBX10O75333 385 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms