RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 TGS1Q96RS0 853 aaKnown RBP13.49□□□□□ -0.25
SYNE1-221ENST00000472563 KIF2CQ99661 725 aa13.49□□□□□ -0.25
SYNE1-221ENST00000472563 FTHL17Q9BXU8 183 aa13.49□□□□□ -0.25
SYNE1-221ENST00000472563 KCNMB3Q9NPA1 279 aa13.49□□□□□ -0.25
SYNE1-221ENST00000472563 RFXAPO00287 272 aa13.48□□□□□ -0.25
SYNE1-221ENST00000472563 TBX3O15119 743 aa13.48□□□□□ -0.25
SYNE1-221ENST00000472563 SLC37A4O43826 429 aa13.48□□□□□ -0.25
SYNE1-221ENST00000472563 RBM25P49756 843 aaKnown RBP13.48□□□□□ -0.25
SYNE1-221ENST00000472563 PRKCEQ02156 737 aa13.48□□□□□ -0.25
SYNE1-221ENST00000472563 ST3GAL1Q11201 340 aa13.48□□□□□ -0.25
SYNE1-221ENST00000472563 NR5A1Q13285 461 aa13.48□□□□□ -0.25
SYNE1-221ENST00000472563 UGCGQ16739 394 aa13.48□□□□□ -0.25
SYNE1-221ENST00000472563 SPRED2Q7Z698 418 aa13.48□□□□□ -0.25
SYNE1-221ENST00000472563 ZNF710Q8N1W2 664 aa13.48□□□□□ -0.25
SYNE1-221ENST00000472563 ZSCAN31Q96LW9 406 aaPredicted RBP13.48□□□□□ -0.25
SYNE1-221ENST00000472563 YME1L1Q96TA2 773 aa13.48□□□□□ -0.25
SYNE1-221ENST00000472563 LLPHQ9BRT6 129 aaKnown RBP13.48□□□□□ -0.25
SYNE1-221ENST00000472563 PADI3Q9ULW8 664 aa13.48□□□□□ -0.25
SYNE1-221ENST00000472563 MTCH2Q9Y6C9 303 aa13.48□□□□□ -0.25
SYNE1-221ENST00000472563 MYH7BA7E2Y1 1941 aa13.48□□□□□ -0.25
SYNE1-221ENST00000472563 TET1Q8NFU7 2136 aa13.48□□□□□ -0.25
SYNE1-221ENST00000472563 SCN5AQ14524 2016 aa13.47□□□□□ -0.25
SYNE1-221ENST00000472563 GTPBP6O43824 516 aaPredicted RBP13.47□□□□□ -0.25
SYNE1-221ENST00000472563 CCNT1O60563 726 aaKnown RBP13.47□□□□□ -0.25
SYNE1-221ENST00000472563 UPP2O95045 317 aa13.47□□□□□ -0.25
SYNE1-221ENST00000472563 MMP1P03956 469 aa13.47□□□□□ -0.25
SYNE1-221ENST00000472563 TMOD1P28289 359 aa13.47□□□□□ -0.25
SYNE1-221ENST00000472563 PAK2Q13177 524 aa13.47□□□□□ -0.25
SYNE1-221ENST00000472563 PPP2R5CQ13362 524 aa13.47□□□□□ -0.25
SYNE1-221ENST00000472563 TRIM29Q14134 588 aa13.47□□□□□ -0.25
SYNE1-221ENST00000472563 TARBP2Q15633 366 aaKnown RBP13.47□□□□□ -0.25
SYNE1-221ENST00000472563 XKR3Q5GH77 459 aa13.47□□□□□ -0.25
SYNE1-221ENST00000472563 EARS2Q5JPH6 523 aaKnown RBP13.47□□□□□ -0.25
SYNE1-221ENST00000472563 KRT40Q6A162 431 aa13.47□□□□□ -0.25
SYNE1-221ENST00000472563 TRMT1LQ7Z2T5 733 aaKnown RBP13.47□□□□□ -0.25
SYNE1-221ENST00000472563 METTL13Q8N6R0 699 aa13.47□□□□□ -0.25
SYNE1-221ENST00000472563 LINC01465Q8N7H1 131 aa13.47□□□□□ -0.25
SYNE1-221ENST00000472563 PPM1EQ8WY54 764 aa13.47□□□□□ -0.25
SYNE1-221ENST00000472563 NIFKQ9BYG3 293 aaKnown RBP13.47□□□□□ -0.25
SYNE1-221ENST00000472563 VAV3Q9UKW4 847 aa13.47□□□□□ -0.25
SYNE1-221ENST00000472563 FAM205CA6NFA0 338 aa13.46□□□□□ -0.25
SYNE1-221ENST00000472563 BTBD18B2RXH4 712 aa13.46□□□□□ -0.25
SYNE1-221ENST00000472563 LPXNO60711 386 aa13.46□□□□□ -0.25
SYNE1-221ENST00000472563 STBD1O95210 358 aa13.46□□□□□ -0.25
SYNE1-221ENST00000472563 CRYBB1P53674 252 aaPredicted RBP13.46□□□□□ -0.25
SYNE1-221ENST00000472563 GRB10Q13322 594 aa13.46□□□□□ -0.25
SYNE1-221ENST00000472563 CCDC85BQ15834 202 aaPredicted RBP13.46□□□□□ -0.25
SYNE1-221ENST00000472563 ODR4Q5SWX8 454 aa13.46□□□□□ -0.25
SYNE1-221ENST00000472563 RTN4RL1Q86UN2 441 aaPredicted RBP13.46□□□□□ -0.25
SYNE1-221ENST00000472563 DIS3L2Q8IYB7 885 aaKnown RBP13.46□□□□□ -0.25
SYNE1-221ENST00000472563 CRIPAKQ8N1N5 446 aa13.46□□□□□ -0.25
SYNE1-221ENST00000472563 LINC01599Q8WXQ3 324 aa13.46□□□□□ -0.25
SYNE1-221ENST00000472563 HAS1Q92839 578 aa13.46□□□□□ -0.25
SYNE1-221ENST00000472563 SAMD11Q96NU1 681 aa13.46□□□□□ -0.25
SYNE1-221ENST00000472563 TSPYL2Q9H2G4 693 aaPredicted RBP13.46□□□□□ -0.25
SYNE1-221ENST00000472563 SUGCTQ9HAC7 445 aa13.46□□□□□ -0.25
SYNE1-221ENST00000472563 CDHR5Q9HBB8 845 aa13.46□□□□□ -0.25
SYNE1-221ENST00000472563 ERVK-5Q9HDB9 667 aa13.46□□□□□ -0.25
SYNE1-221ENST00000472563 SH2B1Q9NRF2 756 aaPredicted RBP13.46□□□□□ -0.25
SYNE1-221ENST00000472563 LMCD1Q9NZU5 365 aa13.46□□□□□ -0.25
SYNE1-221ENST00000472563 GINS2Q9Y248 185 aa13.46□□□□□ -0.25
SYNE1-221ENST00000472563 PRUNE2Q8WUY3 3088 aa13.45□□□□□ -0.26
SYNE1-221ENST00000472563 EML1O00423 815 aa13.45□□□□□ -0.26
SYNE1-221ENST00000472563 MARCH6O60337 910 aa13.45□□□□□ -0.26
SYNE1-221ENST00000472563 GPR32O75388 356 aa13.45□□□□□ -0.26
SYNE1-221ENST00000472563 RPS6KA5O75582 802 aa13.45□□□□□ -0.26
SYNE1-221ENST00000472563 CLCN3P51790 818 aa13.45□□□□□ -0.26
SYNE1-221ENST00000472563 PSMC5P62195 406 aa13.45□□□□□ -0.26
SYNE1-221ENST00000472563 KIZQ2M2Z5 673 aa13.45□□□□□ -0.26
SYNE1-221ENST00000472563 EFCAB12Q6NXP0 572 aa13.45□□□□□ -0.26
SYNE1-221ENST00000472563 CCDC83Q8IWF9 413 aa13.45□□□□□ -0.26
SYNE1-221ENST00000472563 SLFN12Q8IYM2 578 aa13.45□□□□□ -0.26
SYNE1-221ENST00000472563 IL27Q8NEV9 243 aa13.45□□□□□ -0.26
SYNE1-221ENST00000472563 TMEM40Q8WWA1 233 aa13.45□□□□□ -0.26
SYNE1-221ENST00000472563 MAP7D2Q96T17 732 aa13.45□□□□□ -0.26
SYNE1-221ENST00000472563 C17orf80Q9BSJ5 609 aa13.45□□□□□ -0.26
SYNE1-221ENST00000472563 TMX1Q9H3N1 280 aa13.45□□□□□ -0.26
SYNE1-221ENST00000472563 RC3H2Q9HBD1 1191 aaKnown RBP13.45□□□□□ -0.26
SYNE1-221ENST00000472563 MTUS1Q9ULD2 1270 aa13.45□□□□□ -0.26
SYNE1-221ENST00000472563 NOC2LQ9Y3T9 749 aaKnown RBP13.45□□□□□ -0.26
SYNE1-221ENST00000472563 EYSQ5T1H1 3165 aa13.45□□□□□ -0.26
SYNE1-221ENST00000472563 DDX11L8A8MPP1 907 aa13.44□□□□□ -0.26
SYNE1-221ENST00000472563 DLL1O00548 723 aa13.44□□□□□ -0.26
SYNE1-221ENST00000472563 GPR182O15218 404 aa13.44□□□□□ -0.26
SYNE1-221ENST00000472563 DKC1O60832 514 aaKnown RBP eCLIP13.44□□□□□ -0.26
SYNE1-221ENST00000472563 BAG4O95429 457 aaKnown RBP13.44□□□□□ -0.26
SYNE1-221ENST00000472563 VTNP04004 478 aa13.44□□□□□ -0.26
SYNE1-221ENST00000472563 QARSP47897 775 aaKnown RBP13.44□□□□□ -0.26
SYNE1-221ENST00000472563 HMGN5P82970 282 aaKnown RBP13.44□□□□□ -0.26
SYNE1-221ENST00000472563 TBC1D8BQ0IIM8 1120 aa13.44□□□□□ -0.26
SYNE1-221ENST00000472563 NFX1Q12986 1120 aaKnown RBP13.44□□□□□ -0.26
SYNE1-221ENST00000472563 RABEP1Q15276 862 aa13.44□□□□□ -0.26
SYNE1-221ENST00000472563 SAFBQ15424 915 aaKnown RBP eCLIP13.44□□□□□ -0.26
SYNE1-221ENST00000472563 TMEM266Q2M3C6 531 aa13.44□□□□□ -0.26
SYNE1-221ENST00000472563 POTEDQ86YR6 584 aa13.44□□□□□ -0.26
SYNE1-221ENST00000472563 LRRC71Q8N4P6 559 aa13.44□□□□□ -0.26
SYNE1-221ENST00000472563 BANK1Q8NDB2 785 aa13.44□□□□□ -0.26
SYNE1-221ENST00000472563 FBXO22Q8NEZ5 403 aa13.44□□□□□ -0.26
SYNE1-221ENST00000472563 GDPD5Q8WTR4 605 aa13.44□□□□□ -0.26
SYNE1-221ENST00000472563 ZNF689Q96CS4 500 aaPredicted RBP13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms