RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 ADORA1P30542 326 aa8.92□□□□□ -0.98
USP54-208ENST00000461520 AFMP43652 599 aa8.92□□□□□ -0.98
USP54-208ENST00000461520 YARSP54577 528 aaKnown RBP8.92□□□□□ -0.98
USP54-208ENST00000461520 TCP10Q12799 353 aa8.92□□□□□ -0.98
USP54-208ENST00000461520 TFCP2Q12800 502 aa8.92□□□□□ -0.98
USP54-208ENST00000461520 SNAPC2Q13487 334 aa8.92□□□□□ -0.98
USP54-208ENST00000461520 PWP1Q13610 501 aa8.92□□□□□ -0.98
USP54-208ENST00000461520 RASGRF1Q13972 1273 aa8.92□□□□□ -0.98
USP54-208ENST00000461520 MVPQ14764 893 aaKnown RBP8.92□□□□□ -0.98
USP54-208ENST00000461520 ARHGEF6Q15052 776 aa8.92□□□□□ -0.98
USP54-208ENST00000461520 SPTY2D1Q68D10 685 aaPredicted RBP8.92□□□□□ -0.98
USP54-208ENST00000461520 MIGA2Q7L4E1 593 aa8.92□□□□□ -0.98
USP54-208ENST00000461520 FAM43AQ8N2R8 423 aa8.92□□□□□ -0.98
USP54-208ENST00000461520 PIWIL2Q8TC59 973 aaKnown RBP8.92□□□□□ -0.98
USP54-208ENST00000461520 CD99L2Q8TCZ2 262 aa8.92□□□□□ -0.98
USP54-208ENST00000461520 CYB5D2Q8WUJ1 264 aa8.92□□□□□ -0.98
USP54-208ENST00000461520 FRAT1Q92837 279 aaPredicted RBP8.92□□□□□ -0.98
USP54-208ENST00000461520 IDI2Q9BXS1 227 aa8.92□□□□□ -0.98
USP54-208ENST00000461520 DUSP15Q9H1R2 295 aaPredicted RBP8.92□□□□□ -0.98
USP54-208ENST00000461520 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.92□□□□□ -0.98
USP54-208ENST00000461520 KLHL3Q9UH77 587 aa8.92□□□□□ -0.98
USP54-208ENST00000461520 ZNF112Q9UJU3 913 aa8.92□□□□□ -0.98
USP54-208ENST00000461520 PTPN22Q9Y2R2 807 aa8.92□□□□□ -0.98
USP54-208ENST00000461520 BRCA2P51587 3418 aa8.92□□□□□ -0.98
USP54-208ENST00000461520 MYH13Q9UKX3 1938 aa8.92□□□□□ -0.98
USP54-208ENST00000461520 GAKO14976 1311 aa8.91□□□□□ -0.98
USP54-208ENST00000461520 TLR3O15455 904 aaKnown RBP8.91□□□□□ -0.98
USP54-208ENST00000461520 TLR2O60603 784 aa8.91□□□□□ -0.98
USP54-208ENST00000461520 LRRN2O75325 713 aa8.91□□□□□ -0.98
USP54-208ENST00000461520 ENTPD3O75355 529 aa8.91□□□□□ -0.98
USP54-208ENST00000461520 ESR1P03372 595 aa8.91□□□□□ -0.98
USP54-208ENST00000461520 GARTP22102 1010 aa8.91□□□□□ -0.98
USP54-208ENST00000461520 DZIP1Q86YF9 867 aaKnown RBP8.91□□□□□ -0.98
USP54-208ENST00000461520 LIN37Q96GY3 246 aaPredicted RBP8.91□□□□□ -0.98
USP54-208ENST00000461520 SLAMF8Q9P0V8 285 aa8.91□□□□□ -0.98
USP54-208ENST00000461520 ABCF2Q9UG63 623 aa8.91□□□□□ -0.98
USP54-208ENST00000461520 CEP290O15078 2479 aa8.9□□□□□ -0.98
USP54-208ENST00000461520 BTBD19C9JJ37 291 aa8.9□□□□□ -0.98
USP54-208ENST00000461520 DNAJA2O60884 412 aa8.9□□□□□ -0.98
USP54-208ENST00000461520 FARP2O94887 1054 aaPredicted RBP8.9□□□□□ -0.98
USP54-208ENST00000461520 HTR3BO95264 441 aa8.9□□□□□ -0.98
USP54-208ENST00000461520 EN2P19622 333 aaPredicted RBP8.9□□□□□ -0.98
USP54-208ENST00000461520 GDNFP39905 211 aa8.9□□□□□ -0.98
USP54-208ENST00000461520 G3BP1Q13283 466 aaKnown RBP eCLIP8.9□□□□□ -0.98
USP54-208ENST00000461520 ZNF124Q15973 351 aa8.9□□□□□ -0.98
USP54-208ENST00000461520 NOL9Q5SY16 702 aaKnown RBP8.9□□□□□ -0.98
USP54-208ENST00000461520 ZKSCAN2Q63HK3 967 aa8.9□□□□□ -0.98
USP54-208ENST00000461520 CREG2Q8IUH2 290 aa8.9□□□□□ -0.98
USP54-208ENST00000461520 GIPC2Q8TF65 315 aa8.9□□□□□ -0.98
USP54-208ENST00000461520 ARMC5Q96C12 935 aa8.9□□□□□ -0.98
USP54-208ENST00000461520 NEUROD6Q96NK8 337 aa8.9□□□□□ -0.98
USP54-208ENST00000461520 ALPK1Q96QP1 1244 aa8.9□□□□□ -0.98
USP54-208ENST00000461520 RFX7Q2KHR2 1363 aa8.89□□□□□ -0.99
USP54-208ENST00000461520 ATRNL1Q5VV63 1379 aa8.89□□□□□ -0.99
USP54-208ENST00000461520 MROH7-TTC4A0A0A0MT08 1334 aa8.89□□□□□ -0.99
USP54-208ENST00000461520 DNAJC25-GNG10A0A024R161 153 aa8.89□□□□□ -0.99
USP54-208ENST00000461520 PNMA6EA0A0J9YXQ4 647 aa8.89□□□□□ -0.99
USP54-208ENST00000461520 LRRC10BA6NIK2 292 aa8.89□□□□□ -0.99
USP54-208ENST00000461520 CXCL11O14625 94 aa8.89□□□□□ -0.99
USP54-208ENST00000461520 MAP4K4O95819 1239 aaPredicted RBP8.89□□□□□ -0.99
USP54-208ENST00000461520 TPP2P29144 1249 aaPredicted RBP8.89□□□□□ -0.99
USP54-208ENST00000461520 BTDP43251 543 aa8.89□□□□□ -0.99
USP54-208ENST00000461520 RGS3P49796 1198 aa8.89□□□□□ -0.99
USP54-208ENST00000461520 CAP1Q01518 475 aa8.89□□□□□ -0.99
USP54-208ENST00000461520 KIF22Q14807 665 aa8.89□□□□□ -0.99
USP54-208ENST00000461520 GORABQ5T7V8 394 aa8.89□□□□□ -0.99
USP54-208ENST00000461520 FBXL19Q6PCT2 694 aa8.89□□□□□ -0.99
USP54-208ENST00000461520 ERMP1Q7Z2K6 904 aa8.89□□□□□ -0.99
USP54-208ENST00000461520 ANKRD23Q86SG2 305 aa8.89□□□□□ -0.99
USP54-208ENST00000461520 ZFPM1Q8IX07 1006 aa8.89□□□□□ -0.99
USP54-208ENST00000461520 SLFN12Q8IYM2 578 aa8.89□□□□□ -0.99
USP54-208ENST00000461520 TMEM57Q8N5G2 664 aa8.89□□□□□ -0.99
USP54-208ENST00000461520 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.89□□□□□ -0.99
USP54-208ENST00000461520 BAHD1Q8TBE0 780 aaPredicted RBP8.89□□□□□ -0.99
USP54-208ENST00000461520 KIRREL1Q96J84 757 aa8.89□□□□□ -0.99
USP54-208ENST00000461520 HMG20BQ9P0W2 317 aa8.89□□□□□ -0.99
USP54-208ENST00000461520 TNNQ9UQP3 1299 aa8.89□□□□□ -0.99
USP54-208ENST00000461520 ZSWIM8A7E2V4 1837 aa8.89□□□□□ -0.99
USP54-208ENST00000461520 GPR75-ASB3A0A0A6YYF3 556 aa8.88□□□□□ -0.99
USP54-208ENST00000461520 IQCJ-SCHIP1C9J366 451 aaPredicted RBP8.88□□□□□ -0.99
USP54-208ENST00000461520 LDHCP07864 332 aa8.88□□□□□ -0.99
USP54-208ENST00000461520 UQCRFS1P1P0C7P4 283 aa8.88□□□□□ -0.99
USP54-208ENST00000461520 GSTO1P78417 241 aa8.88□□□□□ -0.99
USP54-208ENST00000461520 LACTBP83111 547 aaPredicted RBP8.88□□□□□ -0.99
USP54-208ENST00000461520 MECOMQ03112 1051 aa8.88□□□□□ -0.99
USP54-208ENST00000461520 FZD5Q13467 585 aa8.88□□□□□ -0.99
USP54-208ENST00000461520 MPP2Q14168 576 aa8.88□□□□□ -0.99
USP54-208ENST00000461520 MLANAQ16655 118 aa8.88□□□□□ -0.99
USP54-208ENST00000461520 RALGPS1Q5JS13 557 aa8.88□□□□□ -0.99
USP54-208ENST00000461520 C17orf99Q6UX52 265 aa8.88□□□□□ -0.99
USP54-208ENST00000461520 TMPRSS7Q7RTY8 843 aa8.88□□□□□ -0.99
USP54-208ENST00000461520 REC114Q7Z4M0 266 aa8.88□□□□□ -0.99
USP54-208ENST00000461520 SCYL3Q8IZE3 742 aa8.88□□□□□ -0.99
USP54-208ENST00000461520 SPATA5Q8NB90 893 aa8.88□□□□□ -0.99
USP54-208ENST00000461520 DTWD2Q8NBA8 298 aa8.88□□□□□ -0.99
USP54-208ENST00000461520 NSUN4Q96CB9 384 aaKnown RBP8.88□□□□□ -0.99
USP54-208ENST00000461520 GPR108Q9NPR9 543 aa8.88□□□□□ -0.99
USP54-208ENST00000461520 DDTLA6NHG4 134 aaPredicted RBP8.87□□□□□ -0.99
USP54-208ENST00000461520 PDHXO00330 501 aa8.87□□□□□ -0.99
USP54-208ENST00000461520 IGSF3O75054 1194 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms