RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 MORF4L2Q15014 288 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 ZNF667Q5HYK9 610 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 TMED8Q6PL24 325 aaPredicted RBP7.34□□□□□ -1.23
SCN1A-204ENST00000423058 MCPH1Q8NEM0 835 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 GPKOWQ92917 476 aaPredicted RBP eCLIP7.34□□□□□ -1.23
SCN1A-204ENST00000423058 HINFPQ9BQA5 517 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 ECT2Q9H8V3 914 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 CLDN3O15551 220 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 CAPZA2P47755 286 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 AP1B1Q10567 949 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 PPP1R2P1Q96PQ5 205 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 ZNF341Q9BYN7 854 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 YY1AP1Q9H869 796 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 LSM7Q9UK45 103 aaKnown RBP7.33□□□□□ -1.24
SCN1A-204ENST00000423058 DIS3Q9Y2L1 958 aaKnown RBP7.33□□□□□ -1.24
SCN1A-204ENST00000423058 ZFYVE16Q7Z3T8 1539 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 A0A1B0GW55 424 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 EFCAB8A8MWE9 144 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 LRRN2O75325 713 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 CALB1P05937 261 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 DUX4L2P0CJ85 424 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 DUX4L3P0CJ86 424 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 DUX4L4P0CJ87 422 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 DUX4L5P0CJ88 424 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 DUX4L6P0CJ89 424 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 DUX4L7P0CJ90 424 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 RASSF7Q02833 373 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 MKRN3Q13064 507 aaKnown RBP7.33□□□□□ -1.24
SCN1A-204ENST00000423058 RBBP7Q16576 425 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 ARMC6Q6NXE6 501 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 MMP19Q99542 508 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 ING2Q9H160 280 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 DUX4Q9UBX2 424 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 EXOC1LA0A1B0GW35 172 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 ZW10O43264 779 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 CIAO1O76071 339 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 OAS2P29728 719 aaKnown RBP7.33□□□□□ -1.24
SCN1A-204ENST00000423058 ATICP31939 592 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 TMED2Q15363 201 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 SYMPKQ92797 1274 aaKnown RBP7.33□□□□□ -1.24
SCN1A-204ENST00000423058 TADA1Q96BN2 335 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 TUBGCP2Q9BSJ2 902 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 BSDC1Q9NW68 430 aaPredicted RBP7.33□□□□□ -1.24
SCN1A-204ENST00000423058 FEM1BQ9UK73 627 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 LMNAP02545 664 aaKnown RBP7.33□□□□□ -1.24
SCN1A-204ENST00000423058 ZFXP17010 805 aaPredicted RBP7.33□□□□□ -1.24
SCN1A-204ENST00000423058 TBXAS1P24557 533 aaPredicted RBP7.33□□□□□ -1.24
SCN1A-204ENST00000423058 BLVRAP53004 296 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 FAF2Q96CS3 445 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 RNF26Q9BY78 433 aaPredicted RBP7.33□□□□□ -1.24
SCN1A-204ENST00000423058 FAM49AQ9H0Q0 323 aaPredicted RBP7.33□□□□□ -1.24
SCN1A-204ENST00000423058 STN1Q9H668 368 aaKnown RBP7.33□□□□□ -1.24
SCN1A-204ENST00000423058 ATP6V0A4Q9HBG4 840 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 TPX2Q9ULW0 747 aaKnown RBP7.33□□□□□ -1.24
SCN1A-204ENST00000423058 STAP1Q9ULZ2 295 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 INPP5FQ9Y2H2 1132 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 EPN1Q9Y6I3 576 aaPredicted RBP7.33□□□□□ -1.24
SCN1A-204ENST00000423058 KDM5DQ9BY66 1539 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 PFDN1O60925 122 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 RALBP11234 206 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 FCER1AP12319 257 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 PLS3P13797 630 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 IL6STP40189 918 aaPredicted RBP7.33□□□□□ -1.24
SCN1A-204ENST00000423058 CRKLP46109 303 aaKnown RBP7.33□□□□□ -1.24
SCN1A-204ENST00000423058 LCA5Q86VQ0 697 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 KATNAL1Q9BW62 490 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 ADCY9O60503 1353 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 CDC42BPGQ6DT37 1551 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 DNMT1P26358 1616 aaKnown RBP7.33□□□□□ -1.24
SCN1A-204ENST00000423058 RASSF10A6NK89 507 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 PGRMC1O00264 195 aaKnown RBP7.33□□□□□ -1.24
SCN1A-204ENST00000423058 RAD17O75943 681 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 HSPA4LO95757 839 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 OSTNP61366 133 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 GNGT1P63211 74 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 MAN2A1Q16706 1144 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 ZNF699Q32M78 642 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 NAALADL2Q58DX5 795 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 HABP4Q5JVS0 413 aaKnown RBP7.33□□□□□ -1.24
SCN1A-204ENST00000423058 TBC1D9BQ66K14 1250 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 ITPRIPL1Q6GPH6 555 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 LRRC8BQ6P9F7 803 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 RABGGTAQ92696 567 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 STAMQ92783 540 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 RPRD1BQ9NQG5 326 aaKnown RBP7.33□□□□□ -1.24
SCN1A-204ENST00000423058 ZMYM4Q5VZL5 1548 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 PNMA6FA0A0J9YX94 578 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 GOLGA8RI6L899 631 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 MAPK13O15264 365 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 ALDH1A2O94788 518 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 COPS2P61201 443 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 EHHADHQ08426 723 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 UBE3CQ15386 1083 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 DCAF4L1Q3SXM0 396 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 NT5DC4Q86YG4 428 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 TRMT44Q8IYL2 757 aaKnown RBP7.33□□□□□ -1.24
SCN1A-204ENST00000423058 DCAF4Q8WV16 495 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 EGFL8Q99944 293 aa7.33□□□□□ -1.24
SCN1A-204ENST00000423058 ZSCAN9O15535 394 aaPredicted RBP7.32□□□□□ -1.24
SCN1A-204ENST00000423058 KRT37O76014 449 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms