RNA–Protein interactions for RNA: ENST00000418457.6

VPS41-206, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 532 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-206ENST00000418457 ROM1Q03395 351 aa3.64□□□□□ -1.83
VPS41-206ENST00000418457 DLX2Q07687 328 aaPredicted RBP3.64□□□□□ -1.83
VPS41-206ENST00000418457 LRRC32Q14392 662 aa3.64□□□□□ -1.83
VPS41-206ENST00000418457 RTP5Q14D33 572 aa3.64□□□□□ -1.83
VPS41-206ENST00000418457 TERF2Q15554 542 aa3.64□□□□□ -1.83
VPS41-206ENST00000418457 SMAD2Q15796 467 aaKnown RBP3.64□□□□□ -1.83
VPS41-206ENST00000418457 TTC38Q5R3I4 469 aa3.64□□□□□ -1.83
VPS41-206ENST00000418457 PRR31Q5SQ13 230 aa3.64□□□□□ -1.83
VPS41-206ENST00000418457 GPR158Q5T848 1215 aa3.64□□□□□ -1.83
VPS41-206ENST00000418457 BROXQ5VW32 411 aa3.64□□□□□ -1.83
VPS41-206ENST00000418457 IQSEC1Q6DN90 963 aa3.64□□□□□ -1.83
VPS41-206ENST00000418457 TRMT10BQ6PF06 316 aaKnown RBP3.64□□□□□ -1.83
VPS41-206ENST00000418457 LHFPL2Q6ZUX7 228 aa3.64□□□□□ -1.83
VPS41-206ENST00000418457 HDGFL2Q7Z4V5 671 aaPredicted RBP3.64□□□□□ -1.83
VPS41-206ENST00000418457 SPATS2Q86XZ4 545 aaKnown RBP3.64□□□□□ -1.83
VPS41-206ENST00000418457 PHYKPLQ8IUZ5 450 aa3.64□□□□□ -1.83
VPS41-206ENST00000418457 STPG3Q8N7X2 389 aa3.64□□□□□ -1.83
VPS41-206ENST00000418457 C7orf31Q8N865 590 aa3.64□□□□□ -1.83
VPS41-206ENST00000418457 LINC01356Q8N9X3 169 aa3.64□□□□□ -1.83
VPS41-206ENST00000418457 ZNF610Q8N9Z0 462 aa3.64□□□□□ -1.83
VPS41-206ENST00000418457 ZSCAN18Q8TBC5 510 aaPredicted RBP3.64□□□□□ -1.83
VPS41-206ENST00000418457 RTF1Q92541 710 aaKnown RBP3.64□□□□□ -1.83
VPS41-206ENST00000418457 MAML3Q96JK9 1138 aa3.64□□□□□ -1.83
VPS41-206ENST00000418457 TUBGCP5Q96RT8 1024 aa3.64□□□□□ -1.83
VPS41-206ENST00000418457 FOXB1Q99853 325 aa3.64□□□□□ -1.83
VPS41-206ENST00000418457 BTBD2Q9BX70 525 aa3.64□□□□□ -1.83
VPS41-206ENST00000418457 AMNQ9BXJ7 453 aa3.64□□□□□ -1.83
VPS41-206ENST00000418457 KCND1Q9NSA2 647 aa3.64□□□□□ -1.83
VPS41-206ENST00000418457 NOP58Q9Y2X3 529 aaKnown RBP3.64□□□□□ -1.83
VPS41-206ENST00000418457 A0A1B0GTL3 188 aa3.63□□□□□ -1.83
VPS41-206ENST00000418457 DDX3XO00571 662 aaKnown RBP eCLIP3.63□□□□□ -1.83
VPS41-206ENST00000418457 FFAR3O14843 346 aa3.63□□□□□ -1.83
VPS41-206ENST00000418457 CHGBP05060 677 aa3.63□□□□□ -1.83
VPS41-206ENST00000418457 ZNF28P17035 718 aa3.63□□□□□ -1.83
VPS41-206ENST00000418457 CDK11BP21127 795 aaKnown RBP3.63□□□□□ -1.83
VPS41-206ENST00000418457 CFPP27918 469 aa3.63□□□□□ -1.83
VPS41-206ENST00000418457 IL13P35225 146 aa3.63□□□□□ -1.83
VPS41-206ENST00000418457 SARSP49591 514 aaKnown RBP3.63□□□□□ -1.83
VPS41-206ENST00000418457 MLLT6P55198 1093 aaPredicted RBP3.63□□□□□ -1.83
VPS41-206ENST00000418457 SESN3P58005 492 aa3.63□□□□□ -1.83
VPS41-206ENST00000418457 ANAPC15P60006 121 aa3.63□□□□□ -1.83
VPS41-206ENST00000418457 IL13RA1P78552 427 aa3.63□□□□□ -1.83
VPS41-206ENST00000418457 SLC6A3Q01959 620 aa3.63□□□□□ -1.83
VPS41-206ENST00000418457 VMACQ2NL98 169 aa3.63□□□□□ -1.83
VPS41-206ENST00000418457 WDR72Q3MJ13 1102 aa3.63□□□□□ -1.83
VPS41-206ENST00000418457 PRAMEF9Q5VWM5 478 aa3.63□□□□□ -1.83
VPS41-206ENST00000418457 TIGD7Q6NT04 549 aaPredicted RBP3.63□□□□□ -1.83
VPS41-206ENST00000418457 LRSAM1Q6UWE0 723 aa3.63□□□□□ -1.83
VPS41-206ENST00000418457 FRMD7Q6ZUT3 714 aa3.63□□□□□ -1.83
VPS41-206ENST00000418457 LRRC56Q8IYG6 542 aaPredicted RBP3.63□□□□□ -1.83
VPS41-206ENST00000418457 ADGRG2Q8IZP9 1017 aa3.63□□□□□ -1.83
VPS41-206ENST00000418457 CARFQ8N187 725 aa3.63□□□□□ -1.83
VPS41-206ENST00000418457 ZCCHC14Q8WYQ9 949 aaKnown RBP3.63□□□□□ -1.83
VPS41-206ENST00000418457 OR10A5Q9H207 317 aa3.63□□□□□ -1.83
VPS41-206ENST00000418457 L2HGDHQ9H9P8 463 aa3.63□□□□□ -1.83
VPS41-206ENST00000418457 USP36Q9P275 1121 aaKnown RBP3.63□□□□□ -1.83
VPS41-206ENST00000418457 FTSJ1Q9UET6 329 aa3.63□□□□□ -1.83
VPS41-206ENST00000418457 MSRAQ9UJ68 235 aa3.63□□□□□ -1.83
VPS41-206ENST00000418457 H0Y858 1186 aa3.62□□□□□ -1.83
VPS41-206ENST00000418457 KDM1AO60341 852 aa3.62□□□□□ -1.83
VPS41-206ENST00000418457 APOL3O95236 402 aa3.62□□□□□ -1.83
VPS41-206ENST00000418457 KNG1P01042 644 aa3.62□□□□□ -1.83
VPS41-206ENST00000418457 COL6A1P12109 1028 aa3.62□□□□□ -1.83
VPS41-206ENST00000418457 APEX1P27695 318 aaKnown RBP3.62□□□□□ -1.83
VPS41-206ENST00000418457 RGS3P49796 1198 aa3.62□□□□□ -1.83
VPS41-206ENST00000418457 CDKN1CP49918 316 aaPredicted RBP3.62□□□□□ -1.83
VPS41-206ENST00000418457 IGBP1P78318 339 aa3.62□□□□□ -1.83
VPS41-206ENST00000418457 FAPQ12884 760 aa3.62□□□□□ -1.83
VPS41-206ENST00000418457 STILQ15468 1287 aa3.62□□□□□ -1.83
VPS41-206ENST00000418457 SLFN12LQ6IEE8 588 aa3.62□□□□□ -1.83
VPS41-206ENST00000418457 ESPNLQ6ZVH7 1005 aa3.62□□□□□ -1.83
VPS41-206ENST00000418457 CXXC5Q7LFL8 322 aaKnown RBP3.62□□□□□ -1.83
VPS41-206ENST00000418457 NECAB2Q7Z6G3 386 aa3.62□□□□□ -1.83
VPS41-206ENST00000418457 RASSF3Q86WH2 238 aa3.62□□□□□ -1.83
VPS41-206ENST00000418457 PRPF38AQ8NAV1 312 aaKnown RBP3.62□□□□□ -1.83
VPS41-206ENST00000418457 CLRN3Q8NCR9 226 aa3.62□□□□□ -1.83
VPS41-206ENST00000418457 RPGRQ92834 1020 aaKnown RBP3.62□□□□□ -1.83
VPS41-206ENST00000418457 ZDHHC5Q9C0B5 715 aa3.62□□□□□ -1.83
VPS41-206ENST00000418457 MS4A5Q9H3V2 200 aa3.62□□□□□ -1.83
VPS41-206ENST00000418457 POFUT1Q9H488 388 aa3.62□□□□□ -1.83
VPS41-206ENST00000418457 SLC5A4Q9NY91 659 aa3.62□□□□□ -1.83
VPS41-206ENST00000418457 FBXO10Q9UK96 956 aa3.62□□□□□ -1.83
VPS41-206ENST00000418457 NOC2LQ9Y3T9 749 aaKnown RBP3.62□□□□□ -1.83
VPS41-206ENST00000418457 NACADO15069 1562 aa3.62□□□□□ -1.83
VPS41-206ENST00000418457 PHLDB1Q86UU1 1377 aa3.62□□□□□ -1.83
VPS41-206ENST00000418457 LCHNA4D1U4 455 aa3.61□□□□□ -1.83
VPS41-206ENST00000418457 ALG1L2C9J202 215 aa3.61□□□□□ -1.83
VPS41-206ENST00000418457 PRKD3O94806 890 aa3.61□□□□□ -1.83
VPS41-206ENST00000418457 PRPF6O94906 941 aaKnown RBP3.61□□□□□ -1.83
VPS41-206ENST00000418457 CYP1A1P04798 512 aaPredicted RBP3.61□□□□□ -1.83
VPS41-206ENST00000418457 ADCY8P40145 1251 aa3.61□□□□□ -1.83
VPS41-206ENST00000418457 GUCY2FP51841 1108 aa3.61□□□□□ -1.83
VPS41-206ENST00000418457 BCAR1P56945 870 aa3.61□□□□□ -1.83
VPS41-206ENST00000418457 EVA1CP58658 441 aa3.61□□□□□ -1.83
VPS41-206ENST00000418457 CD83Q01151 205 aa3.61□□□□□ -1.83
VPS41-206ENST00000418457 ADCY2Q08462 1091 aa3.61□□□□□ -1.83
VPS41-206ENST00000418457 NFATC3Q12968 1075 aa3.61□□□□□ -1.83
VPS41-206ENST00000418457 FAM50AQ14320 339 aaKnown RBP3.61□□□□□ -1.83
VPS41-206ENST00000418457 MYBPC3Q14896 1274 aa3.61□□□□□ -1.83
VPS41-206ENST00000418457 FAM26FQ5R3K3 315 aa3.61□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms