RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 RBM46Q8TBY0 533 aaKnown RBP17.78■□□□□ 0.44
NKX3-1-201ENST00000380871 FAM86B1E9PN63 330 aa17.77■□□□□ 0.44
NKX3-1-201ENST00000380871 CEP104O60308 925 aa17.77■□□□□ 0.44
NKX3-1-201ENST00000380871 FAM86B2P0C5J1 330 aa17.77■□□□□ 0.44
NKX3-1-201ENST00000380871 DLGAP5Q15398 846 aa17.77■□□□□ 0.44
NKX3-1-201ENST00000380871 CCDC65Q8IXS2 484 aa17.77■□□□□ 0.44
NKX3-1-201ENST00000380871 PIGOQ8TEQ8 1089 aa17.77■□□□□ 0.44
NKX3-1-201ENST00000380871 DCAF4Q8WV16 495 aa17.77■□□□□ 0.44
NKX3-1-201ENST00000380871 CEP63Q96MT8 703 aa17.77■□□□□ 0.44
NKX3-1-201ENST00000380871 FBXO28Q9NVF7 368 aa17.77■□□□□ 0.44
NKX3-1-201ENST00000380871 AIPL1Q9NZN9 384 aa17.77■□□□□ 0.44
NKX3-1-201ENST00000380871 HDAC9Q9UKV0 1011 aa17.77■□□□□ 0.44
NKX3-1-201ENST00000380871 DCAF17Q5H9S7 520 aaPredicted RBP17.77■□□□□ 0.43
NKX3-1-201ENST00000380871 IRF2BP2Q7Z5L9 587 aa17.77■□□□□ 0.43
NKX3-1-201ENST00000380871 TMEM39BQ9GZU3 492 aa17.77■□□□□ 0.43
NKX3-1-201ENST00000380871 DDX47Q9H0S4 455 aaKnown RBP17.77■□□□□ 0.43
NKX3-1-201ENST00000380871 DDX39AO00148 427 aaKnown RBP17.76■□□□□ 0.43
NKX3-1-201ENST00000380871 INPP5BP32019 993 aa17.76■□□□□ 0.43
NKX3-1-201ENST00000380871 FLT3P36888 993 aa17.76■□□□□ 0.43
NKX3-1-201ENST00000380871 GTF2A1P52655 376 aaPredicted RBP17.76■□□□□ 0.43
NKX3-1-201ENST00000380871 KDM7AQ6ZMT4 941 aa17.76■□□□□ 0.43
NKX3-1-201ENST00000380871 OGFOD1Q8N543 542 aa17.76■□□□□ 0.43
NKX3-1-201ENST00000380871 IDI2Q9BXS1 227 aa17.76■□□□□ 0.43
NKX3-1-201ENST00000380871 LRRC27Q9C0I9 530 aa17.76■□□□□ 0.43
NKX3-1-201ENST00000380871 NUCKS1Q9H1E3 243 aaKnown RBP17.76■□□□□ 0.43
NKX3-1-201ENST00000380871 RNF14Q9UBS8 474 aa17.76■□□□□ 0.43
NKX3-1-201ENST00000380871 PRR12Q9ULL5 1215 aa17.76■□□□□ 0.43
NKX3-1-201ENST00000380871 ATF5Q9Y2D1 282 aaPredicted RBP17.76■□□□□ 0.43
NKX3-1-201ENST00000380871 ITGA4P13612 1032 aa17.76■□□□□ 0.43
NKX3-1-201ENST00000380871 HOXD13P35453 343 aa17.76■□□□□ 0.43
NKX3-1-201ENST00000380871 CTTNQ14247 550 aaKnown RBP17.76■□□□□ 0.43
NKX3-1-201ENST00000380871 RPS6KA1Q15418 735 aa17.76■□□□□ 0.43
NKX3-1-201ENST00000380871 NAA35Q5VZE5 725 aa17.76■□□□□ 0.43
NKX3-1-201ENST00000380871 DPY19L2P1Q6NXN4 242 aa17.76■□□□□ 0.43
NKX3-1-201ENST00000380871 GLIS2Q9BZE0 524 aaPredicted RBP17.76■□□□□ 0.43
NKX3-1-201ENST00000380871 LRRC4CQ9HCJ2 640 aa17.76■□□□□ 0.43
NKX3-1-201ENST00000380871 RSPH10B2B2RC85 870 aa17.76■□□□□ 0.43
NKX3-1-201ENST00000380871 ZBTB39O15060 712 aa17.76■□□□□ 0.43
NKX3-1-201ENST00000380871 RSPH10BP0C881 870 aa17.76■□□□□ 0.43
NKX3-1-201ENST00000380871 UCHL3P15374 230 aa17.76■□□□□ 0.43
NKX3-1-201ENST00000380871 HDLBPQ00341 1268 aaKnown RBP17.76■□□□□ 0.43
NKX3-1-201ENST00000380871 UAP1Q16222 522 aaPredicted RBP17.76■□□□□ 0.43
NKX3-1-201ENST00000380871 PPP1R18Q6NYC8 613 aa17.76■□□□□ 0.43
NKX3-1-201ENST00000380871 KCNV1Q6PIU1 500 aa17.76■□□□□ 0.43
NKX3-1-201ENST00000380871 CATSPER3Q86XQ3 398 aa17.76■□□□□ 0.43
NKX3-1-201ENST00000380871 SPAG5Q96R06 1193 aa17.76■□□□□ 0.43
NKX3-1-201ENST00000380871 LUC7LQ9NQ29 371 aaKnown RBP17.76■□□□□ 0.43
NKX3-1-201ENST00000380871 STK32BQ9NY57 414 aa17.76■□□□□ 0.43
NKX3-1-201ENST00000380871 SERPINA10Q9UK55 444 aa17.76■□□□□ 0.43
NKX3-1-201ENST00000380871 BRWD3Q6RI45 1802 aa17.76■□□□□ 0.43
NKX3-1-201ENST00000380871 MYO1FO00160 1098 aa17.75■□□□□ 0.43
NKX3-1-201ENST00000380871 BACH1O14867 736 aa17.75■□□□□ 0.43
NKX3-1-201ENST00000380871 KIF4AO95239 1232 aa17.75■□□□□ 0.43
NKX3-1-201ENST00000380871 KCNA1Q09470 495 aa17.75■□□□□ 0.43
NKX3-1-201ENST00000380871 ATP6V1G3Q96LB4 118 aa17.75■□□□□ 0.43
NKX3-1-201ENST00000380871 ARFGEF1Q9Y6D6 1849 aa17.75■□□□□ 0.43
NKX3-1-201ENST00000380871 MYBP10242 640 aa17.75■□□□□ 0.43
NKX3-1-201ENST00000380871 HSD17B3P37058 310 aa17.75■□□□□ 0.43
NKX3-1-201ENST00000380871 CASP4P49662 377 aa17.75■□□□□ 0.43
NKX3-1-201ENST00000380871 PLS1Q14651 629 aa17.75■□□□□ 0.43
NKX3-1-201ENST00000380871 SLC15A2Q16348 729 aa17.75■□□□□ 0.43
NKX3-1-201ENST00000380871 TCERG1LQ5VWI1 586 aa17.75■□□□□ 0.43
NKX3-1-201ENST00000380871 STYK1Q6J9G0 422 aa17.75■□□□□ 0.43
NKX3-1-201ENST00000380871 MAEAQ7L5Y9 396 aa17.75■□□□□ 0.43
NKX3-1-201ENST00000380871 TPH2Q8IWU9 490 aa17.75■□□□□ 0.43
NKX3-1-201ENST00000380871 TAF4BQ92750 862 aa17.75■□□□□ 0.43
NKX3-1-201ENST00000380871 TMEM59LQ9UK28 342 aa17.75■□□□□ 0.43
NKX3-1-201ENST00000380871 ANKRD31Q8N7Z5 1873 aa17.75■□□□□ 0.43
NKX3-1-201ENST00000380871 GCFC2P16383 781 aaKnown RBP17.74■□□□□ 0.43
NKX3-1-201ENST00000380871 SLC12A3P55017 1021 aa17.74■□□□□ 0.43
NKX3-1-201ENST00000380871 MARSP56192 900 aaKnown RBP17.74■□□□□ 0.43
NKX3-1-201ENST00000380871 DEFB132Q7Z7B7 95 aa17.74■□□□□ 0.43
NKX3-1-201ENST00000380871 SFR1Q86XK3 245 aa17.74■□□□□ 0.43
NKX3-1-201ENST00000380871 MREGQ8N565 214 aa17.74■□□□□ 0.43
NKX3-1-201ENST00000380871 BHMT2Q9H2M3 363 aa17.74■□□□□ 0.43
NKX3-1-201ENST00000380871 TAF1DQ9H5J8 278 aaPredicted RBP17.74■□□□□ 0.43
NKX3-1-201ENST00000380871 CAPN7Q9Y6W3 813 aa17.74■□□□□ 0.43
NKX3-1-201ENST00000380871 TMCO5BA8MYB1 307 aa17.74■□□□□ 0.43
NKX3-1-201ENST00000380871 ITGB3BPQ13352 177 aaPredicted RBP17.74■□□□□ 0.43
NKX3-1-201ENST00000380871 TATDN1Q6P1N9 297 aa17.74■□□□□ 0.43
NKX3-1-201ENST00000380871 CPXCR1Q8N123 301 aa17.74■□□□□ 0.43
NKX3-1-201ENST00000380871 METTL13Q8N6R0 699 aa17.74■□□□□ 0.43
NKX3-1-201ENST00000380871 LRRC57Q8N9N7 239 aa17.74■□□□□ 0.43
NKX3-1-201ENST00000380871 IPO4Q8TEX9 1081 aaKnown RBP17.74■□□□□ 0.43
NKX3-1-201ENST00000380871 NAGPAQ9UK23 515 aa17.74■□□□□ 0.43
NKX3-1-201ENST00000380871 CETN3O15182 167 aa17.74■□□□□ 0.43
NKX3-1-201ENST00000380871 PPP1R37O75864 691 aa17.74■□□□□ 0.43
NKX3-1-201ENST00000380871 AKAP3O75969 853 aa17.74■□□□□ 0.43
NKX3-1-201ENST00000380871 PON1P27169 355 aa17.74■□□□□ 0.43
NKX3-1-201ENST00000380871 TNNC1P63316 161 aa17.74■□□□□ 0.43
NKX3-1-201ENST00000380871 PTGISQ16647 500 aa17.74■□□□□ 0.43
NKX3-1-201ENST00000380871 ZNF772Q68DY9 489 aaPredicted RBP17.74■□□□□ 0.43
NKX3-1-201ENST00000380871 ZNF473Q8WTR7 871 aaKnown RBP17.74■□□□□ 0.43
NKX3-1-201ENST00000380871 MKL1Q969V6 931 aa17.74■□□□□ 0.43
NKX3-1-201ENST00000380871 NT5C3AQ9H0P0 336 aa17.74■□□□□ 0.43
NKX3-1-201ENST00000380871 EPN3Q9H201 632 aa17.74■□□□□ 0.43
NKX3-1-201ENST00000380871 PPANQ9NQ55 473 aaKnown RBP17.74■□□□□ 0.43
NKX3-1-201ENST00000380871 HOMER2Q9NSB8 354 aa17.74■□□□□ 0.43
NKX3-1-201ENST00000380871 AMACRQ9UHK6 382 aa17.74■□□□□ 0.43
NKX3-1-201ENST00000380871 NOC2LQ9Y3T9 749 aaKnown RBP17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms