RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 GTF2A2P52657 109 aa18.21■□□□□ 0.5
USP4-201ENST00000265560 FKBP3Q00688 224 aaKnown RBP18.21■□□□□ 0.5
USP4-201ENST00000265560 ZNF507Q8TCN5 953 aa18.21■□□□□ 0.5
USP4-201ENST00000265560 CEP170P1Q96L14 293 aa18.21■□□□□ 0.5
USP4-201ENST00000265560 FIZ1Q96SL8 496 aa18.21■□□□□ 0.5
USP4-201ENST00000265560 DESI2Q9BSY9 194 aa18.21■□□□□ 0.5
USP4-201ENST00000265560 COBLL1Q53SF7 1204 aa18.2■□□□□ 0.5
USP4-201ENST00000265560 TRIM50Q86XT4 487 aa18.2■□□□□ 0.5
USP4-201ENST00000265560 RDH13Q8NBN7 331 aa18.2■□□□□ 0.5
USP4-201ENST00000265560 GPRC5AQ8NFJ5 357 aa18.2■□□□□ 0.5
USP4-201ENST00000265560 SOCS7O14512 581 aa18.2■□□□□ 0.5
USP4-201ENST00000265560 MARK3P27448 753 aa18.2■□□□□ 0.5
USP4-201ENST00000265560 PEX3P56589 373 aa18.2■□□□□ 0.5
USP4-201ENST00000265560 MTERF2Q49AM1 385 aa18.2■□□□□ 0.5
USP4-201ENST00000265560 E4F1Q66K89 784 aaPredicted RBP18.2■□□□□ 0.5
USP4-201ENST00000265560 ZNF746Q6NUN9 644 aaPredicted RBP18.2■□□□□ 0.5
USP4-201ENST00000265560 EPM2AIP1Q7L775 607 aaPredicted RBP18.2■□□□□ 0.5
USP4-201ENST00000265560 BAG1Q99933 345 aaPredicted RBP18.2■□□□□ 0.5
USP4-201ENST00000265560 FAM207AQ9NSI2 230 aaPredicted RBP18.2■□□□□ 0.5
USP4-201ENST00000265560 USP20Q9Y2K6 914 aa18.2■□□□□ 0.5
USP4-201ENST00000265560 PCDHB13Q9Y5F0 798 aa18.2■□□□□ 0.5
USP4-201ENST00000265560 HTTP42858 3142 aa18.2■□□□□ 0.5
USP4-201ENST00000265560 SOWAHDA6NJG2 315 aa18.19■□□□□ 0.5
USP4-201ENST00000265560 AKR1B15C9JRZ8 316 aaPredicted RBP18.19■□□□□ 0.5
USP4-201ENST00000265560 GGPS1O95749 300 aa18.19■□□□□ 0.5
USP4-201ENST00000265560 SLC25A27O95847 323 aa18.19■□□□□ 0.5
USP4-201ENST00000265560 SFNP31947 248 aa18.19■□□□□ 0.5
USP4-201ENST00000265560 ZNF157P51786 506 aaPredicted RBP18.19■□□□□ 0.5
USP4-201ENST00000265560 TMEM139Q8IV31 216 aa18.19■□□□□ 0.5
USP4-201ENST00000265560 AGPAT5Q9NUQ2 364 aa18.19■□□□□ 0.5
USP4-201ENST00000265560 R3HCC1Q9Y3T6 440 aaKnown RBP18.19■□□□□ 0.5
USP4-201ENST00000265560 TTC26A0AVF1 554 aa18.19■□□□□ 0.5
USP4-201ENST00000265560 MAFGO15525 162 aa18.19■□□□□ 0.5
USP4-201ENST00000265560 PPP1R2P41236 205 aa18.19■□□□□ 0.5
USP4-201ENST00000265560 PRKCEQ02156 737 aa18.19■□□□□ 0.5
USP4-201ENST00000265560 ZNF720Q7Z2F6 126 aa18.19■□□□□ 0.5
USP4-201ENST00000265560 C4orf19Q8IY42 314 aa18.19■□□□□ 0.5
USP4-201ENST00000265560 NDST4Q9H3R1 872 aa18.19■□□□□ 0.5
USP4-201ENST00000265560 CPA4Q9UI42 421 aa18.19■□□□□ 0.5
USP4-201ENST00000265560 A0A0G2JMZ2 1700 aa18.19■□□□□ 0.5
USP4-201ENST00000265560 K7ENM7 598 aa18.18■□□□□ 0.5
USP4-201ENST00000265560 SLC16A4O15374 487 aa18.18■□□□□ 0.5
USP4-201ENST00000265560 TGFB1I1O43294 461 aa18.18■□□□□ 0.5
USP4-201ENST00000265560 ABHD15Q6UXT9 468 aa18.18■□□□□ 0.5
USP4-201ENST00000265560 NEK9Q8TD19 979 aa18.18■□□□□ 0.5
USP4-201ENST00000265560 CCDC169A6NNP5 214 aa18.18■□□□□ 0.5
USP4-201ENST00000265560 EPHB6O15197 1021 aa18.18■□□□□ 0.5
USP4-201ENST00000265560 PSAPP07602 524 aa18.18■□□□□ 0.5
USP4-201ENST00000265560 ATP4AP20648 1035 aa18.18■□□□□ 0.5
USP4-201ENST00000265560 HSDL1Q3SXM5 330 aa18.18■□□□□ 0.5
USP4-201ENST00000265560 FAM114A1Q8IWE2 563 aa18.18■□□□□ 0.5
USP4-201ENST00000265560 ZNF592Q92610 1267 aa18.18■□□□□ 0.5
USP4-201ENST00000265560 CDHR1Q96JP9 859 aa18.18■□□□□ 0.5
USP4-201ENST00000265560 MMRN2Q9H8L6 949 aa18.18■□□□□ 0.5
USP4-201ENST00000265560 PNMA3Q9UL41 463 aa18.18■□□□□ 0.5
USP4-201ENST00000265560 RASSF10A6NK89 507 aa18.18■□□□□ 0.5
USP4-201ENST00000265560 ADORA2AP29274 412 aa18.18■□□□□ 0.5
USP4-201ENST00000265560 KRT9P35527 623 aa18.18■□□□□ 0.5
USP4-201ENST00000265560 CYP2J2P51589 502 aa18.18■□□□□ 0.5
USP4-201ENST00000265560 TOGARAM2Q6ZUX3 1019 aa18.18■□□□□ 0.5
USP4-201ENST00000265560 PCIF1Q9H4Z3 704 aa18.18■□□□□ 0.5
USP4-201ENST00000265560 MLXIPQ9HAP2 919 aa18.18■□□□□ 0.5
USP4-201ENST00000265560 A0A0U1RQJ8 604 aa18.17■□□□□ 0.5
USP4-201ENST00000265560 TRIM21P19474 475 aaKnown RBP18.17■□□□□ 0.5
USP4-201ENST00000265560 VWA3BQ502W6 1294 aa18.17■□□□□ 0.5
USP4-201ENST00000265560 ATRIPQ8WXE1 791 aa18.17■□□□□ 0.5
USP4-201ENST00000265560 TMX1Q9H3N1 280 aa18.17■□□□□ 0.5
USP4-201ENST00000265560 SYNGAP1Q96PV0 1343 aa18.17■□□□□ 0.5
USP4-201ENST00000265560 MFAP3LO75121 409 aa18.17■□□□□ 0.5
USP4-201ENST00000265560 AKAP3O75969 853 aa18.17■□□□□ 0.5
USP4-201ENST00000265560 EDNRBP24530 442 aa18.17■□□□□ 0.5
USP4-201ENST00000265560 GUCY2CP25092 1073 aa18.17■□□□□ 0.5
USP4-201ENST00000265560 SYCP3Q8IZU3 236 aa18.17■□□□□ 0.5
USP4-201ENST00000265560 ZSWIM2Q8NEG5 633 aa18.17■□□□□ 0.5
USP4-201ENST00000265560 GTPBP4Q9BZE4 634 aaKnown RBP18.17■□□□□ 0.5
USP4-201ENST00000265560 OLFML3Q9NRN5 406 aa18.17■□□□□ 0.5
USP4-201ENST00000265560 SPTLC3Q9NUV7 552 aa18.17■□□□□ 0.5
USP4-201ENST00000265560 FARP2O94887 1054 aaPredicted RBP18.16■□□□□ 0.5
USP4-201ENST00000265560 GAP43P17677 238 aa18.16■□□□□ 0.5
USP4-201ENST00000265560 DNM2P50570 870 aa18.16■□□□□ 0.5
USP4-201ENST00000265560 TCERG1LQ5VWI1 586 aa18.16■□□□□ 0.5
USP4-201ENST00000265560 BSNDQ8WZ55 320 aa18.16■□□□□ 0.5
USP4-201ENST00000265560 ZBTB10Q96DT7 871 aa18.16■□□□□ 0.5
USP4-201ENST00000265560 ZMYM2Q9UBW7 1377 aa18.16■□□□□ 0.5
USP4-201ENST00000265560 DNAJC25-GNG10A0A024R161 153 aa18.16■□□□□ 0.5
USP4-201ENST00000265560 STBD1O95210 358 aa18.16■□□□□ 0.5
USP4-201ENST00000265560 NR3C1P04150 777 aa18.16■□□□□ 0.5
USP4-201ENST00000265560 TPM2P07951 284 aa18.16■□□□□ 0.5
USP4-201ENST00000265560 SUPT20HL2P0C7V6 817 aa18.16■□□□□ 0.5
USP4-201ENST00000265560 DCAF17Q5H9S7 520 aaPredicted RBP18.16■□□□□ 0.5
USP4-201ENST00000265560 CCAR2Q8N163 923 aaKnown RBP18.16■□□□□ 0.5
USP4-201ENST00000265560 DBR1Q9UK59 544 aaKnown RBP18.16■□□□□ 0.5
USP4-201ENST00000265560 GSTTP1A0A1W2PQM5 241 aa18.16■□□□□ 0.5
USP4-201ENST00000265560 CETN3O15182 167 aa18.16■□□□□ 0.5
USP4-201ENST00000265560 ZNF131P52739 623 aa18.16■□□□□ 0.5
USP4-201ENST00000265560 MIS18BP1Q6P0N0 1132 aa18.16■□□□□ 0.5
USP4-201ENST00000265560 SMAP1Q8IYB5 467 aaPredicted RBP18.16■□□□□ 0.5
USP4-201ENST00000265560 ATP6V0A1Q93050 837 aa18.16■□□□□ 0.5
USP4-201ENST00000265560 TMEM143Q96AN5 459 aa18.16■□□□□ 0.5
USP4-201ENST00000265560 CHP1Q99653 195 aa18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms