RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	PSMC4	P43686	418 aa		13.09	□□□□□ -0.31
CLN6-223	ENST00000637823	LACTB	P83111	547 aa	Predicted RBP	13.09	□□□□□ -0.31
CLN6-223	ENST00000637823	SP4	Q02446	784 aa		13.09	□□□□□ -0.31
CLN6-223	ENST00000637823	ACVR2B	Q13705	512 aa		13.09	□□□□□ -0.31
CLN6-223	ENST00000637823	LAMC2	Q13753	1193 aa		13.09	□□□□□ -0.31
CLN6-223	ENST00000637823	GIT2	Q14161	759 aa		13.09	□□□□□ -0.31
CLN6-223	ENST00000637823	KIF22	Q14807	665 aa		13.09	□□□□□ -0.31
CLN6-223	ENST00000637823	UGCG	Q16739	394 aa		13.09	□□□□□ -0.31
CLN6-223	ENST00000637823	COBLL1	Q53SF7	1204 aa		13.09	□□□□□ -0.31
CLN6-223	ENST00000637823	FAM160B1	Q5W0V3	765 aa		13.09	□□□□□ -0.31
CLN6-223	ENST00000637823	C1orf186	Q6ZWK4	172 aa		13.09	□□□□□ -0.31
CLN6-223	ENST00000637823	DHX40	Q8IX18	779 aa	Known RBP	13.09	□□□□□ -0.31
CLN6-223	ENST00000637823	APBA2	Q99767	749 aa		13.09	□□□□□ -0.31
CLN6-223	ENST00000637823	ZNF302	Q9NR11	478 aa		13.09	□□□□□ -0.31
CLN6-223	ENST00000637823	MAFB	Q9Y5Q3	323 aa	Predicted RBP	13.09	□□□□□ -0.31
CLN6-223	ENST00000637823	CASP8AP2	Q9UKL3	1982 aa		13.09	□□□□□ -0.31
CLN6-223	ENST00000637823	NPHP3-ACAD11	A0A0J9YXS1	232 aa		13.08	□□□□□ -0.32
CLN6-223	ENST00000637823	FRMD3	A2A2Y4	597 aa		13.08	□□□□□ -0.32
CLN6-223	ENST00000637823	NKRF	O15226	690 aa	Known RBP eCLIP	13.08	□□□□□ -0.32
CLN6-223	ENST00000637823	SORBS3	O60504	671 aa		13.08	□□□□□ -0.32
CLN6-223	ENST00000637823	STBD1	O95210	358 aa		13.08	□□□□□ -0.32
CLN6-223	ENST00000637823	TBC1D8	O95759	1140 aa		13.08	□□□□□ -0.32
CLN6-223	ENST00000637823	GH1	P01241	217 aa		13.08	□□□□□ -0.32
CLN6-223	ENST00000637823	XRCC5	P13010	732 aa	Known RBP	13.08	□□□□□ -0.32
CLN6-223	ENST00000637823	GAP43	P17677	238 aa		13.08	□□□□□ -0.32
CLN6-223	ENST00000637823	CYP2B6	P20813	491 aa		13.08	□□□□□ -0.32
CLN6-223	ENST00000637823	GUCY2C	P25092	1073 aa		13.08	□□□□□ -0.32
CLN6-223	ENST00000637823	CTGF	P29279	349 aa		13.08	□□□□□ -0.32
CLN6-223	ENST00000637823	TPM4	P67936	248 aa		13.08	□□□□□ -0.32
CLN6-223	ENST00000637823	SP3	Q02447	781 aa		13.08	□□□□□ -0.32
CLN6-223	ENST00000637823	EHHADH	Q08426	723 aa		13.08	□□□□□ -0.32
CLN6-223	ENST00000637823	STIM1	Q13586	685 aa		13.08	□□□□□ -0.32
CLN6-223	ENST00000637823	XKR3	Q5GH77	459 aa		13.08	□□□□□ -0.32
CLN6-223	ENST00000637823	CCDC60	Q8IWA6	550 aa	Predicted RBP	13.08	□□□□□ -0.32
CLN6-223	ENST00000637823	ADSSL1	Q8N142	457 aa		13.08	□□□□□ -0.32
CLN6-223	ENST00000637823	AOPEP	Q8N6M6	819 aa		13.08	□□□□□ -0.32
CLN6-223	ENST00000637823	AFAP1L1	Q8TED9	768 aa		13.08	□□□□□ -0.32
CLN6-223	ENST00000637823	TRIM47	Q96LD4	638 aa		13.08	□□□□□ -0.32
CLN6-223	ENST00000637823	SPATA33	Q96N06	139 aa		13.08	□□□□□ -0.32
CLN6-223	ENST00000637823	GPR20	Q99678	358 aa		13.08	□□□□□ -0.32
CLN6-223	ENST00000637823	RUSC1	Q9BVN2	902 aa		13.08	□□□□□ -0.32
CLN6-223	ENST00000637823	TIPIN	Q9BVW5	301 aa		13.08	□□□□□ -0.32
CLN6-223	ENST00000637823	RNF186	Q9NXI6	227 aa		13.08	□□□□□ -0.32
CLN6-223	ENST00000637823	TELO2	Q9Y4R8	837 aa		13.08	□□□□□ -0.32
CLN6-223	ENST00000637823	ZSWIM8	A7E2V4	1837 aa		13.08	□□□□□ -0.32
CLN6-223	ENST00000637823	KAT6A	Q92794	2004 aa		13.07	□□□□□ -0.32
CLN6-223	ENST00000637823	NOP56	O00567	594 aa	Known RBP	13.07	□□□□□ -0.32
CLN6-223	ENST00000637823	ZNF862	O60290	1169 aa		13.07	□□□□□ -0.32
CLN6-223	ENST00000637823	LGR5	O75473	907 aa		13.07	□□□□□ -0.32
CLN6-223	ENST00000637823	TRPA1	O75762	1119 aa		13.07	□□□□□ -0.32
CLN6-223	ENST00000637823	ECM2	O94769	699 aa	Predicted RBP	13.07	□□□□□ -0.32
CLN6-223	ENST00000637823	IGHA2	P01877	340 aa		13.07	□□□□□ -0.32
CLN6-223	ENST00000637823	CD44	P16070	742 aa	Known RBP	13.07	□□□□□ -0.32
CLN6-223	ENST00000637823	PRCP	P42785	496 aa		13.07	□□□□□ -0.32
CLN6-223	ENST00000637823	RARRES1	P49788	294 aa		13.07	□□□□□ -0.32
CLN6-223	ENST00000637823	ARHGAP1	Q07960	439 aa		13.07	□□□□□ -0.32
CLN6-223	ENST00000637823	STK4	Q13043	487 aa		13.07	□□□□□ -0.32
CLN6-223	ENST00000637823	COASY	Q13057	564 aa		13.07	□□□□□ -0.32
CLN6-223	ENST00000637823	XKR9	Q5GH70	373 aa		13.07	□□□□□ -0.32
CLN6-223	ENST00000637823	PADI6	Q6TGC4	694 aa		13.07	□□□□□ -0.32
CLN6-223	ENST00000637823	SMYD4	Q8IYR2	804 aa	Predicted RBP	13.07	□□□□□ -0.32
CLN6-223	ENST00000637823	ENOX1	Q8TC92	643 aa	Known RBP	13.07	□□□□□ -0.32
CLN6-223	ENST00000637823	ANP32B	Q92688	251 aa	Known RBP	13.07	□□□□□ -0.32
CLN6-223	ENST00000637823	COPS5	Q92905	334 aa		13.07	□□□□□ -0.32
CLN6-223	ENST00000637823	EMID1	Q96A84	441 aa	Predicted RBP	13.07	□□□□□ -0.32
CLN6-223	ENST00000637823	DHTKD1	Q96HY7	919 aa	Predicted RBP	13.07	□□□□□ -0.32
CLN6-223	ENST00000637823	CCDC43	Q96MW1	224 aa	Known RBP	13.07	□□□□□ -0.32
CLN6-223	ENST00000637823	REEP2	Q9BRK0	252 aa		13.07	□□□□□ -0.32
CLN6-223	ENST00000637823	NRBP2	Q9NSY0	501 aa		13.07	□□□□□ -0.32
CLN6-223	ENST00000637823	FLRT1	Q9NZU1	646 aa		13.07	□□□□□ -0.32
CLN6-223	ENST00000637823	ODF2L	Q9ULJ1	636 aa		13.07	□□□□□ -0.32
CLN6-223	ENST00000637823	GDA	Q9Y2T3	454 aa		13.07	□□□□□ -0.32
CLN6-223	ENST00000637823	COL4A3BP	Q9Y5P4	624 aa		13.07	□□□□□ -0.32
CLN6-223	ENST00000637823	IGSF9B	Q9UPX0	1349 aa		13.07	□□□□□ -0.32
CLN6-223	ENST00000637823	THSD7B	Q9C0I4	1608 aa		13.06	□□□□□ -0.32
CLN6-223	ENST00000637823	TBCA	O75347	108 aa	Known RBP	13.06	□□□□□ -0.32
CLN6-223	ENST00000637823	DEK	P35659	375 aa	Known RBP	13.06	□□□□□ -0.32
CLN6-223	ENST00000637823	TCF7	P36402	384 aa	Predicted RBP	13.06	□□□□□ -0.32
CLN6-223	ENST00000637823	ADCYAP1R1	P41586	468 aa		13.06	□□□□□ -0.32
CLN6-223	ENST00000637823	STAT5B	P51692	787 aa		13.06	□□□□□ -0.32
CLN6-223	ENST00000637823	MYL5	Q02045	173 aa		13.06	□□□□□ -0.32
CLN6-223	ENST00000637823	PRKCE	Q02156	737 aa		13.06	□□□□□ -0.32
CLN6-223	ENST00000637823	RAD51AP2	Q09MP3	1159 aa		13.06	□□□□□ -0.32
CLN6-223	ENST00000637823	CCDC144B	Q3MJ40	725 aa		13.06	□□□□□ -0.32
CLN6-223	ENST00000637823	HSDL1	Q3SXM5	330 aa		13.06	□□□□□ -0.32
CLN6-223	ENST00000637823	DUSP28	Q4G0W2	176 aa		13.06	□□□□□ -0.32
CLN6-223	ENST00000637823	HERC4	Q5GLZ8	1057 aa	Predicted RBP	13.06	□□□□□ -0.32
CLN6-223	ENST00000637823	FAM26F	Q5R3K3	315 aa		13.06	□□□□□ -0.32
CLN6-223	ENST00000637823	ANO5	Q75V66	913 aa		13.06	□□□□□ -0.32
CLN6-223	ENST00000637823	PLPPR4	Q7Z2D5	763 aa		13.06	□□□□□ -0.32
CLN6-223	ENST00000637823	TRMT44	Q8IYL2	757 aa	Known RBP	13.06	□□□□□ -0.32
CLN6-223	ENST00000637823	PCYT2	Q99447	389 aa		13.06	□□□□□ -0.32
CLN6-223	ENST00000637823	NIFK	Q9BYG3	293 aa	Known RBP	13.06	□□□□□ -0.32
CLN6-223	ENST00000637823	ARHGAP39	Q9C0H5	1083 aa		13.06	□□□□□ -0.32
CLN6-223	ENST00000637823	AZI2	Q9H6S1	392 aa		13.06	□□□□□ -0.32
CLN6-223	ENST00000637823	SLC39A2	Q9NP94	309 aa		13.06	□□□□□ -0.32
CLN6-223	ENST00000637823	RWDD2A	Q9UIY3	292 aa		13.06	□□□□□ -0.32
CLN6-223	ENST00000637823	ZHX1	Q9UKY1	873 aa	Predicted RBP	13.06	□□□□□ -0.32
CLN6-223	ENST00000637823	PSMA7	O14818	248 aa		13.05	□□□□□ -0.32
CLN6-223	ENST00000637823	FAM13A	O94988	1023 aa		13.05	□□□□□ -0.32

Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms