RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 SLC4A4Q9Y6R1 1079 aa11.8□□□□□ -0.52
UPF3A-212ENST00000619079 BTNL10A8MVZ5 291 aa11.8□□□□□ -0.52
UPF3A-212ENST00000619079 F8VZ95 297 aa11.8□□□□□ -0.52
UPF3A-212ENST00000619079 PGRMC1O00264 195 aaKnown RBP11.8□□□□□ -0.52
UPF3A-212ENST00000619079 BACH1O14867 736 aa11.8□□□□□ -0.52
UPF3A-212ENST00000619079 EPHB6O15197 1021 aa11.8□□□□□ -0.52
UPF3A-212ENST00000619079 SART1O43290 800 aaKnown RBP11.8□□□□□ -0.52
UPF3A-212ENST00000619079 DIAPH2O60879 1101 aa11.8□□□□□ -0.52
UPF3A-212ENST00000619079 FLOT1O75955 427 aa11.8□□□□□ -0.52
UPF3A-212ENST00000619079 IFIT1BQ5T764 474 aaKnown RBP11.8□□□□□ -0.52
UPF3A-212ENST00000619079 SLC30A9Q6PML9 568 aa11.8□□□□□ -0.52
UPF3A-212ENST00000619079 MAGEB6Q8N7X4 407 aa11.8□□□□□ -0.52
UPF3A-212ENST00000619079 C4orf32Q8N8J7 132 aa11.8□□□□□ -0.52
UPF3A-212ENST00000619079 PARD3BQ8TEW8 1205 aa11.8□□□□□ -0.52
UPF3A-212ENST00000619079 ANKIB1Q9P2G1 1089 aa11.8□□□□□ -0.52
UPF3A-212ENST00000619079 L3MBTL1Q9Y468 752 aa11.8□□□□□ -0.52
UPF3A-212ENST00000619079 FERP16591 822 aa11.79□□□□□ -0.52
UPF3A-212ENST00000619079 DNA2P51530 1060 aa11.79□□□□□ -0.52
UPF3A-212ENST00000619079 LACTBP83111 547 aaPredicted RBP11.79□□□□□ -0.52
UPF3A-212ENST00000619079 CCDC178Q5BJE1 867 aa11.79□□□□□ -0.52
UPF3A-212ENST00000619079 SFMBT2Q5VUG0 894 aa11.79□□□□□ -0.52
UPF3A-212ENST00000619079 HGSNATQ68CP4 663 aa11.79□□□□□ -0.52
UPF3A-212ENST00000619079 MFN1Q8IWA4 741 aa11.79□□□□□ -0.52
UPF3A-212ENST00000619079 FAM210AQ96ND0 272 aa11.79□□□□□ -0.52
UPF3A-212ENST00000619079 ZSCAN10Q96SZ4 725 aaPredicted RBP11.79□□□□□ -0.52
UPF3A-212ENST00000619079 PLCD4Q9BRC7 762 aa11.79□□□□□ -0.52
UPF3A-212ENST00000619079 CEP72Q9P209 647 aa11.79□□□□□ -0.52
UPF3A-212ENST00000619079 MYH3P11055 1940 aa11.79□□□□□ -0.52
UPF3A-212ENST00000619079 STXBP3O00186 592 aa11.79□□□□□ -0.52
UPF3A-212ENST00000619079 KCNK3O14649 394 aa11.79□□□□□ -0.52
UPF3A-212ENST00000619079 PLEKHA8P1O95397 391 aa11.79□□□□□ -0.52
UPF3A-212ENST00000619079 SCG2P13521 617 aa11.79□□□□□ -0.52
UPF3A-212ENST00000619079 SLC18A3Q16572 532 aa11.79□□□□□ -0.52
UPF3A-212ENST00000619079 C10orf76Q5T2E6 689 aa11.79□□□□□ -0.52
UPF3A-212ENST00000619079 CENPPQ6IPU0 288 aa11.79□□□□□ -0.52
UPF3A-212ENST00000619079 TMC4Q7Z404 712 aa11.79□□□□□ -0.52
UPF3A-212ENST00000619079 SEC14L1Q92503 715 aa11.79□□□□□ -0.52
UPF3A-212ENST00000619079 ANKS1AQ92625 1134 aa11.79□□□□□ -0.52
UPF3A-212ENST00000619079 ZBTB10Q96DT7 871 aa11.79□□□□□ -0.52
UPF3A-212ENST00000619079 PGM2Q96G03 612 aa11.79□□□□□ -0.52
UPF3A-212ENST00000619079 AK8Q96MA6 479 aa11.79□□□□□ -0.52
UPF3A-212ENST00000619079 C7orf25Q9BPX7 421 aa11.79□□□□□ -0.52
UPF3A-212ENST00000619079 TRIM9Q9C026 710 aa11.79□□□□□ -0.52
UPF3A-212ENST00000619079 STMN4Q9H169 189 aaPredicted RBP11.79□□□□□ -0.52
UPF3A-212ENST00000619079 PANK4Q9NVE7 773 aa11.79□□□□□ -0.52
UPF3A-212ENST00000619079 ZFATQ9P243 1243 aa11.79□□□□□ -0.52
UPF3A-212ENST00000619079 ATP6V0A2Q9Y487 856 aa11.79□□□□□ -0.52
UPF3A-212ENST00000619079 CNTNAP5Q8WYK1 1306 aa11.78□□□□□ -0.52
UPF3A-212ENST00000619079 A6NHS1 94 aa11.78□□□□□ -0.52
UPF3A-212ENST00000619079 CCDC169A6NNP5 214 aa11.78□□□□□ -0.52
UPF3A-212ENST00000619079 ENO4A6NNW6 628 aa11.78□□□□□ -0.52
UPF3A-212ENST00000619079 ATP2A2P16615 1042 aaKnown RBP11.78□□□□□ -0.52
UPF3A-212ENST00000619079 KIF5BP33176 963 aa11.78□□□□□ -0.52
UPF3A-212ENST00000619079 MMP13P45452 471 aa11.78□□□□□ -0.52
UPF3A-212ENST00000619079 USP11P51784 963 aa11.78□□□□□ -0.52
UPF3A-212ENST00000619079 ASIC1P78348 528 aa11.78□□□□□ -0.52
UPF3A-212ENST00000619079 ATP11AP98196 1134 aa11.78□□□□□ -0.52
UPF3A-212ENST00000619079 DHX9Q08211 1270 aaKnown RBP11.78□□□□□ -0.52
UPF3A-212ENST00000619079 SOGA3Q5TF21 947 aa11.78□□□□□ -0.52
UPF3A-212ENST00000619079 SLC51AQ86UW1 340 aa11.78□□□□□ -0.52
UPF3A-212ENST00000619079 ENAHQ8N8S7 591 aaPredicted RBP11.78□□□□□ -0.52
UPF3A-212ENST00000619079 EEF2KMTQ96G04 330 aa11.78□□□□□ -0.52
UPF3A-212ENST00000619079 ANAPC4Q9UJX5 808 aa11.78□□□□□ -0.52
UPF3A-212ENST00000619079 UTP11Q9Y3A2 253 aaKnown RBP11.78□□□□□ -0.52
UPF3A-212ENST00000619079 hCG_1642624A0A1W2PR95 340 aa11.78□□□□□ -0.52
UPF3A-212ENST00000619079 DCDC2CA8MYV0 355 aa11.78□□□□□ -0.52
UPF3A-212ENST00000619079 PPFIA2O75334 1257 aa11.78□□□□□ -0.52
UPF3A-212ENST00000619079 WFS1O76024 890 aa11.78□□□□□ -0.52
UPF3A-212ENST00000619079 KIF4AO95239 1232 aa11.78□□□□□ -0.52
UPF3A-212ENST00000619079 PCP11498 1178 aaKnown RBP11.78□□□□□ -0.52
UPF3A-212ENST00000619079 CHN1P15882 459 aa11.78□□□□□ -0.52
UPF3A-212ENST00000619079 YBX3P16989 372 aaKnown RBP eCLIP11.78□□□□□ -0.52
UPF3A-212ENST00000619079 KLRC1P26715 233 aa11.78□□□□□ -0.52
UPF3A-212ENST00000619079 PDE6CP51160 858 aa11.78□□□□□ -0.52
UPF3A-212ENST00000619079 RPS6KA3P51812 740 aa11.78□□□□□ -0.52
UPF3A-212ENST00000619079 LRRC63Q05C16 580 aa11.78□□□□□ -0.52
UPF3A-212ENST00000619079 STK4Q13043 487 aa11.78□□□□□ -0.52
UPF3A-212ENST00000619079 FAM133BQ5BKY9 247 aaKnown RBP11.78□□□□□ -0.52
UPF3A-212ENST00000619079 FOXR2Q6PJQ5 311 aa11.78□□□□□ -0.52
UPF3A-212ENST00000619079 DPP8Q6V1X1 898 aaPredicted RBP11.78□□□□□ -0.52
UPF3A-212ENST00000619079 SP8Q8IXZ3 490 aa11.78□□□□□ -0.52
UPF3A-212ENST00000619079 SPATA5Q8NB90 893 aa11.78□□□□□ -0.52
UPF3A-212ENST00000619079 ITFG2Q969R8 447 aa11.78□□□□□ -0.52
UPF3A-212ENST00000619079 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.78□□□□□ -0.52
UPF3A-212ENST00000619079 RAB17Q9H0T7 212 aa11.78□□□□□ -0.52
UPF3A-212ENST00000619079 PDE8BO95263 885 aa11.77□□□□□ -0.52
UPF3A-212ENST00000619079 NUDT17P0C025 328 aa11.77□□□□□ -0.52
UPF3A-212ENST00000619079 PHKA1P46020 1223 aa11.77□□□□□ -0.52
UPF3A-212ENST00000619079 TROAPQ12815 778 aa11.77□□□□□ -0.52
UPF3A-212ENST00000619079 PFKFB3Q16875 520 aaPredicted RBP11.77□□□□□ -0.52
UPF3A-212ENST00000619079 ANKRD20A2Q5SQ80 823 aa11.77□□□□□ -0.52
UPF3A-212ENST00000619079 ANKRD20A1Q5TYW2 823 aa11.77□□□□□ -0.52
UPF3A-212ENST00000619079 ANKRD20A3Q5VUR7 823 aa11.77□□□□□ -0.52
UPF3A-212ENST00000619079 VGLL2Q8N8G2 317 aa11.77□□□□□ -0.52
UPF3A-212ENST00000619079 ATXN2LQ8WWM7 1075 aaKnown RBP11.77□□□□□ -0.52
UPF3A-212ENST00000619079 YIPF3Q9GZM5 350 aa11.77□□□□□ -0.52
UPF3A-212ENST00000619079 TCP11L1Q9NUJ3 509 aa11.77□□□□□ -0.52
UPF3A-212ENST00000619079 INTS9Q9NV88 658 aaKnown RBP11.77□□□□□ -0.52
UPF3A-212ENST00000619079 MINPP1Q9UNW1 487 aa11.77□□□□□ -0.52
UPF3A-212ENST00000619079 CEP104O60308 925 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms