RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 LMAN2LQ9H0V9 348 aa12.95□□□□□ -0.34
VPS28-214ENST00000531032 C11orf16Q9NQ32 467 aa12.95□□□□□ -0.34
VPS28-214ENST00000531032 TRPV2Q9Y5S1 764 aa12.95□□□□□ -0.34
VPS28-214ENST00000531032 KDM3AQ9Y4C1 1321 aa12.94□□□□□ -0.34
VPS28-214ENST00000531032 LOXHD1Q8IVV2 1947 aa12.94□□□□□ -0.34
VPS28-214ENST00000531032 KLF18A0A0U1RQI7 1052 aa12.94□□□□□ -0.34
VPS28-214ENST00000531032 POTEB3A0JP26 581 aa12.94□□□□□ -0.34
VPS28-214ENST00000531032 PI4K2BG5E9Z4 385 aa12.94□□□□□ -0.34
VPS28-214ENST00000531032 H3BQ06 376 aaPredicted RBP12.94□□□□□ -0.34
VPS28-214ENST00000531032 M0QZ92 97 aa12.94□□□□□ -0.34
VPS28-214ENST00000531032 GRM6O15303 877 aa12.94□□□□□ -0.34
VPS28-214ENST00000531032 GPR37L1O60883 481 aa12.94□□□□□ -0.34
VPS28-214ENST00000531032 CCNE2O96020 404 aa12.94□□□□□ -0.34
VPS28-214ENST00000531032 HMGB1P09429 215 aaKnown RBP12.94□□□□□ -0.34
VPS28-214ENST00000531032 CDC27P30260 824 aa12.94□□□□□ -0.34
VPS28-214ENST00000531032 BTG3Q14201 252 aaPredicted RBP12.94□□□□□ -0.34
VPS28-214ENST00000531032 TMEM31Q5JXX7 168 aa12.94□□□□□ -0.34
VPS28-214ENST00000531032 POTEBQ6S5H4 581 aa12.94□□□□□ -0.34
VPS28-214ENST00000531032 MTHFD1LQ6UB35 978 aa12.94□□□□□ -0.34
VPS28-214ENST00000531032 RTN4RL1Q86UN2 441 aaPredicted RBP12.94□□□□□ -0.34
VPS28-214ENST00000531032 GJD3Q8N144 294 aa12.94□□□□□ -0.34
VPS28-214ENST00000531032 NME8Q8N427 588 aa12.94□□□□□ -0.34
VPS28-214ENST00000531032 TRAPPC12Q8WVT3 735 aa12.94□□□□□ -0.34
VPS28-214ENST00000531032 CRYGNQ8WXF5 182 aa12.94□□□□□ -0.34
VPS28-214ENST00000531032 PLVAPQ9BX97 442 aa12.94□□□□□ -0.34
VPS28-214ENST00000531032 TMEM260Q9NX78 707 aa12.94□□□□□ -0.34
VPS28-214ENST00000531032 MYO7AQ13402 2215 aa12.94□□□□□ -0.34
VPS28-214ENST00000531032 KIAA1671Q9BY89 1806 aa12.94□□□□□ -0.34
VPS28-214ENST00000531032 SMIM35A0A1B0GVV1 85 aa12.93□□□□□ -0.34
VPS28-214ENST00000531032 ESYT2A0FGR8 921 aa12.93□□□□□ -0.34
VPS28-214ENST00000531032 FAM86B1E9PN63 330 aa12.93□□□□□ -0.34
VPS28-214ENST00000531032 NCK2O43639 380 aa12.93□□□□□ -0.34
VPS28-214ENST00000531032 MMP1P03956 469 aa12.93□□□□□ -0.34
VPS28-214ENST00000531032 FAM86B2P0C5J1 330 aa12.93□□□□□ -0.34
VPS28-214ENST00000531032 PLA2G5P39877 138 aa12.93□□□□□ -0.34
VPS28-214ENST00000531032 TMEM62Q0P6H9 643 aa12.93□□□□□ -0.34
VPS28-214ENST00000531032 PFKFB3Q16875 520 aaPredicted RBP12.93□□□□□ -0.34
VPS28-214ENST00000531032 CTC1Q2NKJ3 1217 aa12.93□□□□□ -0.34
VPS28-214ENST00000531032 ABHD15Q6UXT9 468 aa12.93□□□□□ -0.34
VPS28-214ENST00000531032 NPAS4Q8IUM7 802 aa12.93□□□□□ -0.34
VPS28-214ENST00000531032 CMTR2Q8IYT2 770 aaKnown RBP12.93□□□□□ -0.34
VPS28-214ENST00000531032 CELF4Q9BZC1 486 aaKnown RBP12.93□□□□□ -0.34
VPS28-214ENST00000531032 PADI3Q9ULW8 664 aa12.93□□□□□ -0.34
VPS28-214ENST00000531032 ARIH1Q9Y4X5 557 aaPredicted RBP12.93□□□□□ -0.34
VPS28-214ENST00000531032 NID2Q14112 1375 aa12.93□□□□□ -0.34
VPS28-214ENST00000531032 IGLV3-22A0A075B6J6 115 aa12.92□□□□□ -0.34
VPS28-214ENST00000531032 CCDC196A0A1B0GTZ2 297 aa12.92□□□□□ -0.34
VPS28-214ENST00000531032 DHX15O43143 795 aaKnown RBP12.92□□□□□ -0.34
VPS28-214ENST00000531032 HBP1O60381 514 aa12.92□□□□□ -0.34
VPS28-214ENST00000531032 CDC45O75419 566 aa12.92□□□□□ -0.34
VPS28-214ENST00000531032 CYP3A4P08684 503 aa12.92□□□□□ -0.34
VPS28-214ENST00000531032 SCG2P13521 617 aa12.92□□□□□ -0.34
VPS28-214ENST00000531032 LTBRP36941 435 aa12.92□□□□□ -0.34
VPS28-214ENST00000531032 KRT76Q01546 638 aa12.92□□□□□ -0.34
VPS28-214ENST00000531032 PAK2Q13177 524 aa12.92□□□□□ -0.34
VPS28-214ENST00000531032 FAM43BQ6ZT52 329 aaPredicted RBP12.92□□□□□ -0.34
VPS28-214ENST00000531032 PLA2G4DQ86XP0 818 aa12.92□□□□□ -0.34
VPS28-214ENST00000531032 CCDC60Q8IWA6 550 aaPredicted RBP12.92□□□□□ -0.34
VPS28-214ENST00000531032 ATP8B4Q8TF62 1192 aa12.92□□□□□ -0.34
VPS28-214ENST00000531032 KCNB2Q92953 911 aa12.92□□□□□ -0.34
VPS28-214ENST00000531032 P2RX5Q93086 422 aa12.92□□□□□ -0.34
VPS28-214ENST00000531032 TMX1Q9H3N1 280 aa12.92□□□□□ -0.34
VPS28-214ENST00000531032 CLDND1Q9NY35 253 aa12.92□□□□□ -0.34
VPS28-214ENST00000531032 MRPL42Q9Y6G3 142 aaKnown RBP12.92□□□□□ -0.34
VPS28-214ENST00000531032 COL1A2P08123 1366 aa12.92□□□□□ -0.34
VPS28-214ENST00000531032 ZBTB42B2RXF5 422 aa12.91□□□□□ -0.34
VPS28-214ENST00000531032 DDX39AO00148 427 aaKnown RBP12.91□□□□□ -0.34
VPS28-214ENST00000531032 BACH1O14867 736 aa12.91□□□□□ -0.34
VPS28-214ENST00000531032 STAG3L1P0CL83 205 aa12.91□□□□□ -0.34
VPS28-214ENST00000531032 KLRC1P26715 233 aa12.91□□□□□ -0.34
VPS28-214ENST00000531032 SSTR3P32745 418 aaPredicted RBP12.91□□□□□ -0.34
VPS28-214ENST00000531032 ADD1P35611 737 aaKnown RBP12.91□□□□□ -0.34
VPS28-214ENST00000531032 ZNF76P36508 570 aa12.91□□□□□ -0.34
VPS28-214ENST00000531032 METAP2P50579 478 aaKnown RBP eCLIP12.91□□□□□ -0.34
VPS28-214ENST00000531032 HYAL1Q12794 435 aa12.91□□□□□ -0.34
VPS28-214ENST00000531032 CAMK1Q14012 370 aa12.91□□□□□ -0.34
VPS28-214ENST00000531032 NAALADL2Q58DX5 795 aa12.91□□□□□ -0.34
VPS28-214ENST00000531032 JAKMIP3Q5VZ66 844 aa12.91□□□□□ -0.34
VPS28-214ENST00000531032 FAM160B1Q5W0V3 765 aa12.91□□□□□ -0.34
VPS28-214ENST00000531032 ZMYND12Q9H0C1 365 aa12.91□□□□□ -0.34
VPS28-214ENST00000531032 PRKAG3Q9UGI9 489 aa12.91□□□□□ -0.34
VPS28-214ENST00000531032 PLAGL2Q9UPG8 496 aa12.91□□□□□ -0.34
VPS28-214ENST00000531032 FAM50BQ9Y247 325 aa12.91□□□□□ -0.34
VPS28-214ENST00000531032 HCN4Q9Y3Q4 1203 aa12.91□□□□□ -0.34
VPS28-214ENST00000531032 FAM86C2PA6NEL3 165 aa12.9□□□□□ -0.34
VPS28-214ENST00000531032 IPO5O00410 1097 aaKnown RBP12.9□□□□□ -0.34
VPS28-214ENST00000531032 ADAMTS3O15072 1205 aa12.9□□□□□ -0.34
VPS28-214ENST00000531032 ATP4AP20648 1035 aa12.9□□□□□ -0.34
VPS28-214ENST00000531032 FGD1P98174 961 aa12.9□□□□□ -0.34
VPS28-214ENST00000531032 SETQ01105 290 aaPredicted RBP12.9□□□□□ -0.34
VPS28-214ENST00000531032 ZP2Q05996 745 aa12.9□□□□□ -0.34
VPS28-214ENST00000531032 APOBRQ0VD83 1088 aa12.9□□□□□ -0.34
VPS28-214ENST00000531032 PKN1Q16512 942 aa12.9□□□□□ -0.34
VPS28-214ENST00000531032 TMEM266Q2M3C6 531 aa12.9□□□□□ -0.34
VPS28-214ENST00000531032 ZNF484Q5JVG2 852 aa12.9□□□□□ -0.34
VPS28-214ENST00000531032 MCTP2Q6DN12 878 aa12.9□□□□□ -0.34
VPS28-214ENST00000531032 MIS18BP1Q6P0N0 1132 aa12.9□□□□□ -0.34
VPS28-214ENST00000531032 PDXDC2PQ6P474 469 aa12.9□□□□□ -0.34
VPS28-214ENST00000531032 EP400NLQ6ZTU2 488 aa12.9□□□□□ -0.34
VPS28-214ENST00000531032 KIAA0319LQ8IZA0 1049 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms