RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 IGFLR1Q9H665 355 aa26.95■■□□□ 1.9
CPSF1-202ENST00000527827 PADI3Q9ULW8 664 aa26.95■■□□□ 1.9
CPSF1-202ENST00000527827 CNTNAP5Q8WYK1 1306 aa26.94■■□□□ 1.9
CPSF1-202ENST00000527827 IGSF9BQ9UPX0 1349 aa26.94■■□□□ 1.9
CPSF1-202ENST00000527827 LINC01565O15544 149 aa26.94■■□□□ 1.9
CPSF1-202ENST00000527827 ARP10275 920 aa26.94■■□□□ 1.9
CPSF1-202ENST00000527827 DNAJB1P25685 340 aa26.94■■□□□ 1.9
CPSF1-202ENST00000527827 IRX6P78412 446 aaPredicted RBP26.94■■□□□ 1.9
CPSF1-202ENST00000527827 PLPPR4Q7Z2D5 763 aa26.94■■□□□ 1.9
CPSF1-202ENST00000527827 PGBD1Q96JS3 809 aa26.94■■□□□ 1.9
CPSF1-202ENST00000527827 UIMC1Q96RL1 719 aa26.94■■□□□ 1.9
CPSF1-202ENST00000527827 PIEZO1Q92508 2521 aa26.94■■□□□ 1.9
CPSF1-202ENST00000527827 ITGB1P05556 798 aa26.93■■□□□ 1.9
CPSF1-202ENST00000527827 STAT5BP51692 787 aa26.93■■□□□ 1.9
CPSF1-202ENST00000527827 ITGB3BPQ13352 177 aaPredicted RBP26.93■■□□□ 1.9
CPSF1-202ENST00000527827 ADAM15Q13444 863 aa26.93■■□□□ 1.9
CPSF1-202ENST00000527827 CSPP1Q1MSJ5 1256 aa26.93■■□□□ 1.9
CPSF1-202ENST00000527827 TNPO1Q92973 898 aaKnown RBP26.93■■□□□ 1.9
CPSF1-202ENST00000527827 SDF4Q9BRK5 362 aa26.93■■□□□ 1.9
CPSF1-202ENST00000527827 CELF4Q9BZC1 486 aaKnown RBP26.93■■□□□ 1.9
CPSF1-202ENST00000527827 RIC8AQ9NPQ8 531 aa26.93■■□□□ 1.9
CPSF1-202ENST00000527827 KDM3AQ9Y4C1 1321 aa26.92■■□□□ 1.9
CPSF1-202ENST00000527827 SMIM35A0A1B0GVV1 85 aa26.92■■□□□ 1.9
CPSF1-202ENST00000527827 M0QZ92 97 aa26.92■■□□□ 1.9
CPSF1-202ENST00000527827 ATG7O95352 703 aa26.92■■□□□ 1.9
CPSF1-202ENST00000527827 FUT2Q10981 343 aa26.92■■□□□ 1.9
CPSF1-202ENST00000527827 SMAD4Q13485 552 aaKnown RBP26.92■■□□□ 1.9
CPSF1-202ENST00000527827 NAALADL2Q58DX5 795 aa26.92■■□□□ 1.9
CPSF1-202ENST00000527827 SPPL3Q8TCT6 385 aa26.92■■□□□ 1.9
CPSF1-202ENST00000527827 TMX1Q9H3N1 280 aa26.92■■□□□ 1.9
CPSF1-202ENST00000527827 AGO4Q9HCK5 861 aaKnown RBP26.92■■□□□ 1.9
CPSF1-202ENST00000527827 STAG3L1P0CL83 205 aa26.91■■□□□ 1.9
CPSF1-202ENST00000527827 SCG2P13521 617 aa26.91■■□□□ 1.9
CPSF1-202ENST00000527827 NAPAP54920 295 aa26.91■■□□□ 1.9
CPSF1-202ENST00000527827 PAK2Q13177 524 aa26.91■■□□□ 1.9
CPSF1-202ENST00000527827 PAN2Q504Q3 1202 aaKnown RBP26.91■■□□□ 1.9
CPSF1-202ENST00000527827 CEP55Q53EZ4 464 aa26.91■■□□□ 1.9
CPSF1-202ENST00000527827 APOA5Q6Q788 366 aa26.91■■□□□ 1.9
CPSF1-202ENST00000527827 MTHFD1LQ6UB35 978 aa26.91■■□□□ 1.9
CPSF1-202ENST00000527827 ANO3Q9BYT9 981 aa26.91■■□□□ 1.9
CPSF1-202ENST00000527827 CD207Q9UJ71 328 aa26.91■■□□□ 1.9
CPSF1-202ENST00000527827 PLXNA4Q9HCM2 1894 aa26.91■■□□□ 1.9
CPSF1-202ENST00000527827 GATMP50440 423 aa26.9■■□□□ 1.9
CPSF1-202ENST00000527827 PPP1R18Q6NYC8 613 aa26.9■■□□□ 1.9
CPSF1-202ENST00000527827 ADGRD2Q7Z7M1 963 aa26.9■■□□□ 1.9
CPSF1-202ENST00000527827 TEX2Q8IWB9 1127 aa26.9■■□□□ 1.9
CPSF1-202ENST00000527827 NME8Q8N427 588 aa26.9■■□□□ 1.9
CPSF1-202ENST00000527827 KLHL23Q8NBE8 558 aa26.9■■□□□ 1.9
CPSF1-202ENST00000527827 UPF3BQ9BZI7 483 aaKnown RBP26.9■■□□□ 1.9
CPSF1-202ENST00000527827 EVPLQ92817 2033 aa26.9■■□□□ 1.9
CPSF1-202ENST00000527827 IGKV6D-21A0A0A0MT36 114 aa26.89■■□□□ 1.9
CPSF1-202ENST00000527827 MEIS1O00470 390 aa26.89■■□□□ 1.9
CPSF1-202ENST00000527827 FOSP01100 380 aaPredicted RBP26.89■■□□□ 1.9
CPSF1-202ENST00000527827 KRT76Q01546 638 aa26.89■■□□□ 1.9
CPSF1-202ENST00000527827 TMEM266Q2M3C6 531 aa26.89■■□□□ 1.9
CPSF1-202ENST00000527827 SYNE3Q6ZMZ3 975 aa26.89■■□□□ 1.9
CPSF1-202ENST00000527827 MSLNLQ96KJ4 702 aa26.89■■□□□ 1.9
CPSF1-202ENST00000527827 POP1Q99575 1024 aaKnown RBP26.89■■□□□ 1.9
CPSF1-202ENST00000527827 ANO2Q9NQ90 1003 aa26.89■■□□□ 1.9
CPSF1-202ENST00000527827 RBM28Q9NW13 759 aaKnown RBP26.89■■□□□ 1.9
CPSF1-202ENST00000527827 TMEM260Q9NX78 707 aa26.89■■□□□ 1.9
CPSF1-202ENST00000527827 FNDC1Q4ZHG4 1894 aaPredicted RBP26.89■■□□□ 1.89
CPSF1-202ENST00000527827 STXBP3O00186 592 aa26.88■■□□□ 1.89
CPSF1-202ENST00000527827 CCNE2O96020 404 aa26.88■■□□□ 1.89
CPSF1-202ENST00000527827 ADCY7P51828 1080 aa26.88■■□□□ 1.89
CPSF1-202ENST00000527827 POF1BQ8WVV4 589 aa26.88■■□□□ 1.89
CPSF1-202ENST00000527827 BRPF3Q9ULD4 1205 aa26.88■■□□□ 1.89
CPSF1-202ENST00000527827 ZNF318Q5VUA4 2279 aa26.88■■□□□ 1.89
CPSF1-202ENST00000527827 TRIOO75962 3097 aa26.88■■□□□ 1.89
CPSF1-202ENST00000527827 KLRC1P26715 233 aa26.87■■□□□ 1.89
CPSF1-202ENST00000527827 SREBF1P36956 1147 aa26.87■■□□□ 1.89
CPSF1-202ENST00000527827 CLK2P49760 499 aaKnown RBP26.87■■□□□ 1.89
CPSF1-202ENST00000527827 SLC26A2P50443 739 aa26.87■■□□□ 1.89
CPSF1-202ENST00000527827 EXOSC10Q01780 885 aaKnown RBP26.87■■□□□ 1.89
CPSF1-202ENST00000527827 ABHD15Q6UXT9 468 aa26.87■■□□□ 1.89
CPSF1-202ENST00000527827 TCEANC2Q96MN5 208 aa26.87■■□□□ 1.89
CPSF1-202ENST00000527827 CDHR5Q9HBB8 845 aa26.87■■□□□ 1.89
CPSF1-202ENST00000527827 ERVK-5Q9HDB9 667 aa26.87■■□□□ 1.89
CPSF1-202ENST00000527827 CLEC1BQ9P126 229 aa26.87■■□□□ 1.89
CPSF1-202ENST00000527827 MUTYHQ9UIF7 546 aa26.87■■□□□ 1.89
CPSF1-202ENST00000527827 V9GY48 417 aaPredicted RBP26.87■■□□□ 1.89
CPSF1-202ENST00000527827 SMCO2A6NFE2 343 aa26.86■■□□□ 1.89
CPSF1-202ENST00000527827 MGEA5O60502 916 aa26.86■■□□□ 1.89
CPSF1-202ENST00000527827 EYA4O95677 639 aa26.86■■□□□ 1.89
CPSF1-202ENST00000527827 SARSP49591 514 aaKnown RBP26.86■■□□□ 1.89
CPSF1-202ENST00000527827 NDUFV1P49821 464 aa26.86■■□□□ 1.89
CPSF1-202ENST00000527827 NFX1Q12986 1120 aaKnown RBP26.86■■□□□ 1.89
CPSF1-202ENST00000527827 RTN1Q16799 776 aa26.86■■□□□ 1.89
CPSF1-202ENST00000527827 HERC4Q5GLZ8 1057 aaPredicted RBP26.86■■□□□ 1.89
CPSF1-202ENST00000527827 RNF135Q8IUD6 432 aa26.86■■□□□ 1.89
CPSF1-202ENST00000527827 EFHBQ8N7U6 833 aa26.86■■□□□ 1.89
CPSF1-202ENST00000527827 PPP2R3CQ969Q6 453 aa26.86■■□□□ 1.89
CPSF1-202ENST00000527827 LRFN2Q9ULH4 789 aa26.86■■□□□ 1.89
CPSF1-202ENST00000527827 NOC2LQ9Y3T9 749 aaKnown RBP26.86■■□□□ 1.89
CPSF1-202ENST00000527827 TECTAO75443 2155 aa26.85■■□□□ 1.89
CPSF1-202ENST00000527827 DDX39AO00148 427 aaKnown RBP26.85■■□□□ 1.89
CPSF1-202ENST00000527827 HBP1O60381 514 aa26.85■■□□□ 1.89
CPSF1-202ENST00000527827 AP3B2Q13367 1082 aa26.85■■□□□ 1.89
CPSF1-202ENST00000527827 HFE2Q6ZVN8 426 aa26.85■■□□□ 1.89
CPSF1-202ENST00000527827 NIPA1Q7RTP0 329 aa26.85■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms