RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 KCNA1Q09470 495 aa23.24■■□□□ 1.31
CCDC88B-208ENST00000492980 KCNH2Q12809 1159 aa23.24■■□□□ 1.31
CCDC88B-208ENST00000492980 SAMD3Q8N6K7 520 aa23.24■■□□□ 1.31
CCDC88B-208ENST00000492980 BANK1Q8NDB2 785 aa23.24■■□□□ 1.31
CCDC88B-208ENST00000492980 PARVGQ9HBI0 331 aa23.24■■□□□ 1.31
CCDC88B-208ENST00000492980 KCND2Q9NZV8 630 aa23.24■■□□□ 1.31
CCDC88B-208ENST00000492980 ZMYM2Q9UBW7 1377 aa23.23■■□□□ 1.31
CCDC88B-208ENST00000492980 ZBED4O75132 1171 aa23.23■■□□□ 1.31
CCDC88B-208ENST00000492980 LCA5LO95447 670 aa23.23■■□□□ 1.31
CCDC88B-208ENST00000492980 NR3C1P04150 777 aa23.23■■□□□ 1.31
CCDC88B-208ENST00000492980 NMT1P30419 496 aaKnown RBP23.23■■□□□ 1.31
CCDC88B-208ENST00000492980 KIF11P52732 1056 aa23.23■■□□□ 1.31
CCDC88B-208ENST00000492980 ZNF131P52739 623 aa23.23■■□□□ 1.31
CCDC88B-208ENST00000492980 AMPD2Q01433 879 aa23.23■■□□□ 1.31
CCDC88B-208ENST00000492980 SPA17Q15506 151 aa23.23■■□□□ 1.31
CCDC88B-208ENST00000492980 TEX35Q5T0J7 233 aa23.23■■□□□ 1.31
CCDC88B-208ENST00000492980 CEP112Q8N8E3 955 aa23.23■■□□□ 1.31
CCDC88B-208ENST00000492980 GOLGA1Q92805 767 aa23.23■■□□□ 1.31
CCDC88B-208ENST00000492980 CRACR2AQ9BSW2 395 aa23.23■■□□□ 1.31
CCDC88B-208ENST00000492980 AGO4Q9HCK5 861 aaKnown RBP23.23■■□□□ 1.31
CCDC88B-208ENST00000492980 JADE2Q9NQC1 790 aa23.23■■□□□ 1.31
CCDC88B-208ENST00000492980 ARMCX3Q9UH62 379 aaPredicted RBP23.23■■□□□ 1.31
CCDC88B-208ENST00000492980 RPS6P62753 249 aaKnown RBP23.23■■□□□ 1.31
CCDC88B-208ENST00000492980 ITGB3BPQ13352 177 aaPredicted RBP23.23■■□□□ 1.31
CCDC88B-208ENST00000492980 MIER3Q7Z3K6 550 aa23.23■■□□□ 1.31
CCDC88B-208ENST00000492980 EHBP1Q8NDI1 1231 aa23.23■■□□□ 1.31
CCDC88B-208ENST00000492980 PURBQ96QR8 312 aaKnown RBP23.23■■□□□ 1.31
CCDC88B-208ENST00000492980 TAAR1Q96RJ0 339 aa23.23■■□□□ 1.31
CCDC88B-208ENST00000492980 FIZ1Q96SL8 496 aa23.23■■□□□ 1.31
CCDC88B-208ENST00000492980 NLRC4Q9NPP4 1024 aa23.23■■□□□ 1.31
CCDC88B-208ENST00000492980 SEL1LQ9UBV2 794 aa23.23■■□□□ 1.31
CCDC88B-208ENST00000492980 TGFB1I1O43294 461 aa23.22■■□□□ 1.31
CCDC88B-208ENST00000492980 AKAP3O75969 853 aa23.22■■□□□ 1.31
CCDC88B-208ENST00000492980 BACE1P56817 501 aa23.22■■□□□ 1.31
CCDC88B-208ENST00000492980 ANGEL2Q5VTE6 544 aaKnown RBP23.22■■□□□ 1.31
CCDC88B-208ENST00000492980 ZKSCAN4Q969J2 545 aaPredicted RBP23.22■■□□□ 1.31
CCDC88B-208ENST00000492980 NUCKS1Q9H1E3 243 aaKnown RBP23.22■■□□□ 1.31
CCDC88B-208ENST00000492980 PNMA2Q9UL42 364 aa23.22■■□□□ 1.31
CCDC88B-208ENST00000492980 ODF2LQ9ULJ1 636 aa23.22■■□□□ 1.31
CCDC88B-208ENST00000492980 CTDP1Q9Y5B0 961 aaPredicted RBP23.22■■□□□ 1.31
CCDC88B-208ENST00000492980 RLFQ13129 1914 aa23.22■■□□□ 1.31
CCDC88B-208ENST00000492980 VWA5AO00534 786 aa23.21■■□□□ 1.31
CCDC88B-208ENST00000492980 SLC16A3O15427 465 aaKnown RBP23.21■■□□□ 1.31
CCDC88B-208ENST00000492980 RPL13P26373 211 aaKnown RBP23.21■■□□□ 1.31
CCDC88B-208ENST00000492980 EPS15P42566 896 aa23.21■■□□□ 1.31
CCDC88B-208ENST00000492980 CLCN6P51797 869 aa23.21■■□□□ 1.31
CCDC88B-208ENST00000492980 CHMP4BP1P59074 171 aa23.21■■□□□ 1.31
CCDC88B-208ENST00000492980 HGSNATQ68CP4 663 aa23.21■■□□□ 1.31
CCDC88B-208ENST00000492980 GPIHBP1Q8IV16 184 aa23.21■■□□□ 1.31
CCDC88B-208ENST00000492980 GPR161Q8N6U8 529 aaKnown RBP23.21■■□□□ 1.31
CCDC88B-208ENST00000492980 RABGGTAQ92696 567 aa23.21■■□□□ 1.31
CCDC88B-208ENST00000492980 SYN2Q92777 582 aaPredicted RBP23.21■■□□□ 1.31
CCDC88B-208ENST00000492980 ATG4CQ96DT6 458 aa23.21■■□□□ 1.31
CCDC88B-208ENST00000492980 WNK4Q96J92 1243 aa23.21■■□□□ 1.31
CCDC88B-208ENST00000492980 WRNIP1Q96S55 665 aa23.21■■□□□ 1.31
CCDC88B-208ENST00000492980 EPC1Q9H2F5 836 aa23.21■■□□□ 1.31
CCDC88B-208ENST00000492980 DEF6Q9H4E7 631 aa23.21■■□□□ 1.31
CCDC88B-208ENST00000492980 DDX41Q9UJV9 622 aaKnown RBP23.21■■□□□ 1.31
CCDC88B-208ENST00000492980 PHIPQ8WWQ0 1821 aa23.21■■□□□ 1.31
CCDC88B-208ENST00000492980 FDX1P10109 184 aa23.21■■□□□ 1.31
CCDC88B-208ENST00000492980 PTPRAP18433 802 aa23.21■■□□□ 1.31
CCDC88B-208ENST00000492980 EIF2AK2P19525 551 aaKnown RBP23.21■■□□□ 1.31
CCDC88B-208ENST00000492980 GUCY2CP25092 1073 aa23.21■■□□□ 1.31
CCDC88B-208ENST00000492980 POLR2FP61218 127 aaKnown RBP23.21■■□□□ 1.31
CCDC88B-208ENST00000492980 APBA1Q02410 837 aa23.21■■□□□ 1.31
CCDC88B-208ENST00000492980 MAPK8IP2Q13387 824 aaPredicted RBP23.21■■□□□ 1.31
CCDC88B-208ENST00000492980 PGM5Q15124 567 aa23.21■■□□□ 1.31
CCDC88B-208ENST00000492980 WHAMMP3Q1A5X7 153 aa23.21■■□□□ 1.31
CCDC88B-208ENST00000492980 ASTE1Q2TB18 679 aaPredicted RBP23.21■■□□□ 1.31
CCDC88B-208ENST00000492980 PRAMEF18Q5VWM3 479 aa23.21■■□□□ 1.31
CCDC88B-208ENST00000492980 APOBEC3FQ8IUX4 373 aaKnown RBP23.21■■□□□ 1.31
CCDC88B-208ENST00000492980 ZNF280CQ8ND82 737 aa23.21■■□□□ 1.31
CCDC88B-208ENST00000492980 TRERF1Q96PN7 1200 aa23.21■■□□□ 1.31
CCDC88B-208ENST00000492980 TSGA10Q9BZW7 698 aa23.21■■□□□ 1.31
CCDC88B-208ENST00000492980 GANQ9H2C0 597 aa23.21■■□□□ 1.31
CCDC88B-208ENST00000492980 AS3MTQ9HBK9 375 aa23.21■■□□□ 1.31
CCDC88B-208ENST00000492980 ZNF446Q9NWS9 450 aa23.21■■□□□ 1.31
CCDC88B-208ENST00000492980 PUF60Q9UHX1 559 aaKnown RBP23.21■■□□□ 1.31
CCDC88B-208ENST00000492980 PCDHA13Q9Y5I0 950 aa23.21■■□□□ 1.31
CCDC88B-208ENST00000492980 COL11A1P12107 1806 aaPredicted RBP23.21■■□□□ 1.31
CCDC88B-208ENST00000492980 UBE4BO95155 1302 aa23.2■■□□□ 1.31
CCDC88B-208ENST00000492980 ARHGEF35A5YM69 484 aa23.2■■□□□ 1.3
CCDC88B-208ENST00000492980 KIF5AQ12840 1032 aa23.2■■□□□ 1.3
CCDC88B-208ENST00000492980 MTMR1Q13613 665 aa23.2■■□□□ 1.3
CCDC88B-208ENST00000492980 ZC2HC1CQ53FD0 456 aaPredicted RBP23.2■■□□□ 1.3
CCDC88B-208ENST00000492980 IFIH1Q9BYX4 1025 aaKnown RBP23.2■■□□□ 1.3
CCDC88B-208ENST00000492980 MYO6Q9UM54 1294 aa23.2■■□□□ 1.3
CCDC88B-208ENST00000492980 DUSP10Q9Y6W6 482 aa23.2■■□□□ 1.3
CCDC88B-208ENST00000492980 MYH11P35749 1972 aa23.2■■□□□ 1.3
CCDC88B-208ENST00000492980 SSU72P8A0A1W2PR75 194 aa23.2■■□□□ 1.3
CCDC88B-208ENST00000492980 SPDYE4A6NLX3 237 aa23.2■■□□□ 1.3
CCDC88B-208ENST00000492980 CLIC2O15247 247 aa23.2■■□□□ 1.3
CCDC88B-208ENST00000492980 AKR1B10O60218 316 aa23.2■■□□□ 1.3
CCDC88B-208ENST00000492980 TLR2O60603 784 aa23.2■■□□□ 1.3
CCDC88B-208ENST00000492980 AFPP02771 609 aaKnown RBP23.2■■□□□ 1.3
CCDC88B-208ENST00000492980 TFRCP02786 760 aaKnown RBP23.2■■□□□ 1.3
CCDC88B-208ENST00000492980 CASP4P49662 377 aa23.2■■□□□ 1.3
CCDC88B-208ENST00000492980 NFIL3Q16649 462 aa23.2■■□□□ 1.3
CCDC88B-208ENST00000492980 SFMBT2Q5VUG0 894 aa23.2■■□□□ 1.3
CCDC88B-208ENST00000492980 TRPM4Q8TD43 1214 aa23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms