RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 STRIP1Q5VSL9 837 aa14.68□□□□□ -0.06
VPS54-203ENST00000409558 TAF4BQ92750 862 aa14.68□□□□□ -0.06
VPS54-203ENST00000409558 CCDC127Q96BQ5 260 aa14.68□□□□□ -0.06
VPS54-203ENST00000409558 ZEB2O60315 1214 aa14.68□□□□□ -0.06
VPS54-203ENST00000409558 SOX10P56693 466 aa14.68□□□□□ -0.06
VPS54-203ENST00000409558 KNOP1Q1ED39 458 aaKnown RBP14.68□□□□□ -0.06
VPS54-203ENST00000409558 CREG2Q8IUH2 290 aa14.68□□□□□ -0.06
VPS54-203ENST00000409558 WDR18Q9BV38 432 aa14.68□□□□□ -0.06
VPS54-203ENST00000409558 EXOC3O60645 756 aa14.68□□□□□ -0.06
VPS54-203ENST00000409558 SLC12A3P55017 1021 aa14.68□□□□□ -0.06
VPS54-203ENST00000409558 PPP1R18Q6NYC8 613 aa14.68□□□□□ -0.06
VPS54-203ENST00000409558 FAM178BQ8IXR5 827 aa14.68□□□□□ -0.06
VPS54-203ENST00000409558 MSANTD4Q8NCY6 345 aa14.68□□□□□ -0.06
VPS54-203ENST00000409558 ZNF341Q9BYN7 854 aa14.68□□□□□ -0.06
VPS54-203ENST00000409558 GCFC2P16383 781 aaKnown RBP14.67□□□□□ -0.06
VPS54-203ENST00000409558 GLYCTKQ8IVS8 523 aa14.67□□□□□ -0.06
VPS54-203ENST00000409558 SLFN12Q8IYM2 578 aa14.67□□□□□ -0.06
VPS54-203ENST00000409558 KIFC3Q9BVG8 833 aa14.67□□□□□ -0.06
VPS54-203ENST00000409558 RAVER2Q9HCJ3 691 aaKnown RBP14.67□□□□□ -0.06
VPS54-203ENST00000409558 GPRC5CQ9NQ84 441 aa14.67□□□□□ -0.06
VPS54-203ENST00000409558 KIAA1551Q9HCM1 1747 aa14.67□□□□□ -0.06
VPS54-203ENST00000409558 CALCAP01258 141 aa14.67□□□□□ -0.06
VPS54-203ENST00000409558 EPB41P11171 864 aaKnown RBP14.67□□□□□ -0.06
VPS54-203ENST00000409558 CARSP49589 748 aaKnown RBP14.67□□□□□ -0.06
VPS54-203ENST00000409558 TLR10Q9BXR5 811 aa14.67□□□□□ -0.06
VPS54-203ENST00000409558 MYH1P12882 1939 aa14.67□□□□□ -0.06
VPS54-203ENST00000409558 GOLGA6BA6NDN3 693 aa14.67□□□□□ -0.06
VPS54-203ENST00000409558 GCOM1H8Y6P7 765 aaPredicted RBP14.67□□□□□ -0.06
VPS54-203ENST00000409558 POLR2MP0CAP2 368 aa14.67□□□□□ -0.06
VPS54-203ENST00000409558 SSTR3P32745 418 aaPredicted RBP14.67□□□□□ -0.06
VPS54-203ENST00000409558 DHX37Q8IY37 1157 aaKnown RBP14.67□□□□□ -0.06
VPS54-203ENST00000409558 ATF5Q9Y2D1 282 aaPredicted RBP14.67□□□□□ -0.06
VPS54-203ENST00000409558 GJA3Q9Y6H8 435 aa14.67□□□□□ -0.06
VPS54-203ENST00000409558 KRT14P02533 472 aa14.66□□□□□ -0.06
VPS54-203ENST00000409558 UCHL3P15374 230 aa14.66□□□□□ -0.06
VPS54-203ENST00000409558 ZNF211Q13398 564 aaPredicted RBP14.66□□□□□ -0.06
VPS54-203ENST00000409558 GRIPAP1Q4V328 841 aa14.66□□□□□ -0.06
VPS54-203ENST00000409558 PAPD7Q5XG87 772 aaKnown RBP14.66□□□□□ -0.06
VPS54-203ENST00000409558 HGSNATQ68CP4 663 aa14.66□□□□□ -0.06
VPS54-203ENST00000409558 ZNF571Q7Z3V5 609 aaPredicted RBP14.66□□□□□ -0.06
VPS54-203ENST00000409558 ZSWIM2Q8NEG5 633 aa14.66□□□□□ -0.06
VPS54-203ENST00000409558 UHMK1Q8TAS1 419 aaKnown RBP14.66□□□□□ -0.06
VPS54-203ENST00000409558 TSGA10Q9BZW7 698 aa14.66□□□□□ -0.06
VPS54-203ENST00000409558 ARHGEF10LQ9HCE6 1279 aa14.66□□□□□ -0.06
VPS54-203ENST00000409558 KCNMB3Q9NPA1 279 aa14.66□□□□□ -0.06
VPS54-203ENST00000409558 FAM53CQ9NYF3 392 aa14.66□□□□□ -0.06
VPS54-203ENST00000409558 WRAP73Q9P2S5 460 aaPredicted RBP14.66□□□□□ -0.06
VPS54-203ENST00000409558 CCPG1Q9ULG6 757 aa14.66□□□□□ -0.06
VPS54-203ENST00000409558 DDX60LQ5H9U9 1706 aaKnown RBP14.66□□□□□ -0.06
VPS54-203ENST00000409558 TESPA1A2RU30 521 aaPredicted RBP14.66□□□□□ -0.06
VPS54-203ENST00000409558 SMIM23A6NLE4 172 aa14.66□□□□□ -0.06
VPS54-203ENST00000409558 OPLAHO14841 1288 aa14.66□□□□□ -0.06
VPS54-203ENST00000409558 HEXIM1O94992 359 aaKnown RBP14.66□□□□□ -0.06
VPS54-203ENST00000409558 AFPP02771 609 aaKnown RBP14.66□□□□□ -0.06
VPS54-203ENST00000409558 KLHDC7AQ5VTJ3 777 aa14.66□□□□□ -0.06
VPS54-203ENST00000409558 MAATS1Q7Z4T9 603 aa14.66□□□□□ -0.06
VPS54-203ENST00000409558 DEFB132Q7Z7B7 95 aa14.66□□□□□ -0.06
VPS54-203ENST00000409558 NYAP2Q9P242 653 aa14.66□□□□□ -0.06
VPS54-203ENST00000409558 NFIBO00712 420 aa14.66□□□□□ -0.06
VPS54-203ENST00000409558 FECHP22830 423 aa14.66□□□□□ -0.06
VPS54-203ENST00000409558 ALKBH5Q6P6C2 394 aaKnown RBP14.66□□□□□ -0.06
VPS54-203ENST00000409558 ETNPPLQ8TBG4 499 aa14.66□□□□□ -0.06
VPS54-203ENST00000409558 DCAF4Q8WV16 495 aa14.66□□□□□ -0.06
VPS54-203ENST00000409558 WDR11Q9BZH6 1224 aa14.66□□□□□ -0.06
VPS54-203ENST00000409558 DPH5Q9H2P9 285 aa14.66□□□□□ -0.06
VPS54-203ENST00000409558 LTBP4Q8N2S1 1624 aa14.66□□□□□ -0.06
VPS54-203ENST00000409558 ARHGEF35A5YM69 484 aa14.65□□□□□ -0.06
VPS54-203ENST00000409558 hCG_1984214I3L0E3 225 aa14.65□□□□□ -0.06
VPS54-203ENST00000409558 TRIM66O15016 1216 aa14.65□□□□□ -0.06
VPS54-203ENST00000409558 FAM153BP0C7A2 387 aa14.65□□□□□ -0.06
VPS54-203ENST00000409558 HPDP32754 393 aaPredicted RBP14.65□□□□□ -0.06
VPS54-203ENST00000409558 FAM153CQ494X1 144 aa14.65□□□□□ -0.06
VPS54-203ENST00000409558 MAP9Q49MG5 647 aa14.65□□□□□ -0.06
VPS54-203ENST00000409558 DAAM2Q86T65 1068 aa14.65□□□□□ -0.06
VPS54-203ENST00000409558 TRIM59Q8IWR1 403 aa14.65□□□□□ -0.06
VPS54-203ENST00000409558 FAM186BQ8IYM0 893 aa14.65□□□□□ -0.06
VPS54-203ENST00000409558 ZNF713Q8N859 430 aaPredicted RBP14.65□□□□□ -0.06
VPS54-203ENST00000409558 AKT1S1Q96B36 256 aa14.65□□□□□ -0.06
VPS54-203ENST00000409558 DDX47Q9H0S4 455 aaKnown RBP14.65□□□□□ -0.06
VPS54-203ENST00000409558 ACBD3Q9H3P7 528 aa14.65□□□□□ -0.06
VPS54-203ENST00000409558 CEP72Q9P209 647 aa14.65□□□□□ -0.06
VPS54-203ENST00000409558 FAM153AQ9UHL3 310 aa14.65□□□□□ -0.06
VPS54-203ENST00000409558 MAP2K7O14733 419 aa14.65□□□□□ -0.06
VPS54-203ENST00000409558 PEX10O60683 326 aa14.65□□□□□ -0.06
VPS54-203ENST00000409558 SERPING1P05155 500 aa14.65□□□□□ -0.06
VPS54-203ENST00000409558 GLI1P08151 1106 aa14.65□□□□□ -0.06
VPS54-203ENST00000409558 SMARCA1P28370 1054 aa14.65□□□□□ -0.06
VPS54-203ENST00000409558 PPP1R2P41236 205 aa14.65□□□□□ -0.06
VPS54-203ENST00000409558 RINT1Q6NUQ1 792 aa14.65□□□□□ -0.06
VPS54-203ENST00000409558 KCTD10Q9H3F6 313 aa14.65□□□□□ -0.06
VPS54-203ENST00000409558 OSGEPQ9NPF4 335 aa14.65□□□□□ -0.06
VPS54-203ENST00000409558 CCDC169A6NNP5 214 aa14.65□□□□□ -0.06
VPS54-203ENST00000409558 HOXD13P35453 343 aa14.65□□□□□ -0.06
VPS54-203ENST00000409558 USP11P51784 963 aa14.65□□□□□ -0.06
VPS54-203ENST00000409558 IL31RAQ8NI17 732 aa14.65□□□□□ -0.06
VPS54-203ENST00000409558 LCMT1Q9UIC8 334 aa14.65□□□□□ -0.06
VPS54-203ENST00000409558 RAB21Q9UL25 225 aa14.65□□□□□ -0.06
VPS54-203ENST00000409558 COL5A3P25940 1745 aaPredicted RBP14.65□□□□□ -0.06
VPS54-203ENST00000409558 K7ENM7 598 aa14.65□□□□□ -0.06
VPS54-203ENST00000409558 EGFRP00533 1210 aa14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms