RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 USP17L6PQ6QN14 398 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 RBM17Q96I25 401 aaKnown RBP9.37□□□□□ -0.91
RTN3-202ENST00000339997 VCX3AQ9NNX9 186 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 PICK1Q9NRD5 415 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 ZKSCAN7Q9P0L1 754 aaPredicted RBP9.37□□□□□ -0.91
RTN3-202ENST00000339997 TRPC6Q9Y210 931 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 VIRMAQ69YN4 1812 aaKnown RBP9.37□□□□□ -0.91
RTN3-202ENST00000339997 PPRC1Q5VV67 1664 aaKnown RBP9.37□□□□□ -0.91
RTN3-202ENST00000339997 DIAPH2O60879 1101 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 TFRCP02786 760 aaKnown RBP9.37□□□□□ -0.91
RTN3-202ENST00000339997 BRAFP15056 766 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 FGFR4P22455 802 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 PSMC2P35998 433 aaKnown RBP9.37□□□□□ -0.91
RTN3-202ENST00000339997 GCLMP48507 274 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 SCARF1Q14162 830 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 RAD9BQ6WBX8 426 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 METTL16Q86W50 562 aaKnown RBP9.37□□□□□ -0.91
RTN3-202ENST00000339997 PPP1R36Q96LQ0 422 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.37□□□□□ -0.91
RTN3-202ENST00000339997 KLC4Q9NSK0 619 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 MAP3K7O43318 606 aa9.36□□□□□ -0.91
RTN3-202ENST00000339997 SERPING1P05155 500 aa9.36□□□□□ -0.91
RTN3-202ENST00000339997 PCCAP05165 728 aaPredicted RBP9.36□□□□□ -0.91
RTN3-202ENST00000339997 PPP2R5EQ16537 467 aa9.36□□□□□ -0.91
RTN3-202ENST00000339997 KCTD19Q17RG1 926 aaPredicted RBP9.36□□□□□ -0.91
RTN3-202ENST00000339997 USPL1Q5W0Q7 1092 aa9.36□□□□□ -0.91
RTN3-202ENST00000339997 ZBTB33Q86T24 672 aa9.36□□□□□ -0.91
RTN3-202ENST00000339997 EXT2Q93063 718 aa9.36□□□□□ -0.91
RTN3-202ENST00000339997 UBE2Q2LH0YL09 131 aa9.36□□□□□ -0.91
RTN3-202ENST00000339997 USP14P54578 494 aa9.36□□□□□ -0.91
RTN3-202ENST00000339997 CCDC125Q86Z20 511 aa9.36□□□□□ -0.91
RTN3-202ENST00000339997 PYROXD1Q8WU10 500 aa9.36□□□□□ -0.91
RTN3-202ENST00000339997 NLRP7Q8WX94 980 aa9.36□□□□□ -0.91
RTN3-202ENST00000339997 TMEM260Q9NX78 707 aa9.36□□□□□ -0.91
RTN3-202ENST00000339997 NOD1Q9Y239 953 aa9.36□□□□□ -0.91
RTN3-202ENST00000339997 ZNF518AQ6AHZ1 1483 aa9.36□□□□□ -0.91
RTN3-202ENST00000339997 MADDQ8WXG6 1647 aa9.36□□□□□ -0.91
RTN3-202ENST00000339997 INO80B-WBP1J3KQ70 363 aa9.36□□□□□ -0.91
RTN3-202ENST00000339997 POLR2MP0CAP2 368 aa9.36□□□□□ -0.91
RTN3-202ENST00000339997 RAD23BP54727 409 aa9.36□□□□□ -0.91
RTN3-202ENST00000339997 TMPRSS15P98073 1019 aa9.36□□□□□ -0.91
RTN3-202ENST00000339997 TXNRD1Q16881 649 aa9.36□□□□□ -0.91
RTN3-202ENST00000339997 PPP6R3Q5H9R7 873 aaPredicted RBP9.36□□□□□ -0.91
RTN3-202ENST00000339997 GLYCTKQ8IVS8 523 aa9.36□□□□□ -0.91
RTN3-202ENST00000339997 C1orf54Q8WWF1 131 aa9.36□□□□□ -0.91
RTN3-202ENST00000339997 INO80BQ9C086 356 aaPredicted RBP9.36□□□□□ -0.91
RTN3-202ENST00000339997 CACYBPQ9HB71 228 aaKnown RBP9.36□□□□□ -0.91
RTN3-202ENST00000339997 ZNF711Q9Y462 761 aa9.36□□□□□ -0.91
RTN3-202ENST00000339997 KIF24Q5T7B8 1368 aa9.36□□□□□ -0.91
RTN3-202ENST00000339997 WDR46O15213 610 aaKnown RBP9.36□□□□□ -0.91
RTN3-202ENST00000339997 COPB2P35606 906 aa9.36□□□□□ -0.91
RTN3-202ENST00000339997 POLGP54098 1239 aaPredicted RBP9.36□□□□□ -0.91
RTN3-202ENST00000339997 SLMAPQ14BN4 828 aa9.36□□□□□ -0.91
RTN3-202ENST00000339997 FAM83BQ5T0W9 1011 aa9.36□□□□□ -0.91
RTN3-202ENST00000339997 DARS2Q6PI48 645 aaKnown RBP9.36□□□□□ -0.91
RTN3-202ENST00000339997 TRIML2Q8N7C3 387 aa9.36□□□□□ -0.91
RTN3-202ENST00000339997 STRBPQ96SI9 672 aaKnown RBP9.36□□□□□ -0.91
RTN3-202ENST00000339997 SLC13A1Q9BZW2 595 aa9.36□□□□□ -0.91
RTN3-202ENST00000339997 IRAK4Q9NWZ3 460 aa9.36□□□□□ -0.91
RTN3-202ENST00000339997 LZTS1Q9Y250 596 aa9.36□□□□□ -0.91
RTN3-202ENST00000339997 DUOX2Q9NRD8 1548 aa9.35□□□□□ -0.91
RTN3-202ENST00000339997 DDAH1O94760 285 aa9.35□□□□□ -0.91
RTN3-202ENST00000339997 CYP2E1P05181 493 aaPredicted RBP9.35□□□□□ -0.91
RTN3-202ENST00000339997 PRDX5P30044 214 aa9.35□□□□□ -0.91
RTN3-202ENST00000339997 MXI1P50539 228 aa9.35□□□□□ -0.91
RTN3-202ENST00000339997 DMP1Q13316 513 aaPredicted RBP9.35□□□□□ -0.91
RTN3-202ENST00000339997 ARHGEF25Q86VW2 580 aa9.35□□□□□ -0.91
RTN3-202ENST00000339997 MED10Q9BTT4 135 aa9.35□□□□□ -0.91
RTN3-202ENST00000339997 CARD10Q9BWT7 1032 aa9.35□□□□□ -0.91
RTN3-202ENST00000339997 ACTR5Q9H9F9 607 aaPredicted RBP9.35□□□□□ -0.91
RTN3-202ENST00000339997 CD248Q9HCU0 757 aa9.35□□□□□ -0.91
RTN3-202ENST00000339997 ANAPC7Q9UJX3 599 aa9.35□□□□□ -0.91
RTN3-202ENST00000339997 ZCCHC11Q5TAX3 1644 aaKnown RBP9.35□□□□□ -0.91
RTN3-202ENST00000339997 LGALS16A8MUM7 142 aa9.35□□□□□ -0.91
RTN3-202ENST00000339997 TRIM49P0CI25 452 aa9.35□□□□□ -0.91
RTN3-202ENST00000339997 TRIM49CP0CI26 452 aa9.35□□□□□ -0.91
RTN3-202ENST00000339997 GRIN1Q05586 938 aa9.35□□□□□ -0.91
RTN3-202ENST00000339997 PARP9Q8IXQ6 854 aa9.35□□□□□ -0.91
RTN3-202ENST00000339997 AFAP1L2Q8N4X5 818 aa9.35□□□□□ -0.91
RTN3-202ENST00000339997 IQCDQ96DY2 449 aa9.35□□□□□ -0.91
RTN3-202ENST00000339997 LRGUKQ96M69 825 aa9.35□□□□□ -0.91
RTN3-202ENST00000339997 FGD4Q96M96 766 aa9.35□□□□□ -0.91
RTN3-202ENST00000339997 RIOK1Q9BRS2 568 aaKnown RBP9.35□□□□□ -0.91
RTN3-202ENST00000339997 ZNF577Q9BSK1 485 aa9.35□□□□□ -0.91
RTN3-202ENST00000339997 YY1AP1Q9H869 796 aa9.35□□□□□ -0.91
RTN3-202ENST00000339997 KRT82Q9NSB4 513 aa9.35□□□□□ -0.91
RTN3-202ENST00000339997 DNAJC12Q9UKB3 198 aa9.35□□□□□ -0.91
RTN3-202ENST00000339997 AP5Z1O43299 807 aa9.35□□□□□ -0.91
RTN3-202ENST00000339997 SUPT3HO75486 399 aa9.35□□□□□ -0.91
RTN3-202ENST00000339997 ZNF18P17022 549 aa9.35□□□□□ -0.91
RTN3-202ENST00000339997 ZBTB41Q5SVQ8 909 aa9.35□□□□□ -0.91
RTN3-202ENST00000339997 MIGA2Q7L4E1 593 aa9.35□□□□□ -0.91
RTN3-202ENST00000339997 SYT2Q8N9I0 419 aaPredicted RBP9.35□□□□□ -0.91
RTN3-202ENST00000339997 LRRN4CLQ8ND94 238 aa9.35□□□□□ -0.91
RTN3-202ENST00000339997 GLT8D2Q9H1C3 349 aa9.35□□□□□ -0.91
RTN3-202ENST00000339997 SEPT9Q9UHD8 586 aaPredicted RBP9.35□□□□□ -0.91
RTN3-202ENST00000339997 DBR1Q9UK59 544 aaKnown RBP9.35□□□□□ -0.91
RTN3-202ENST00000339997 INO80Q9ULG1 1556 aaPredicted RBP9.35□□□□□ -0.91
RTN3-202ENST00000339997 KLK7P49862 253 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 MFAP3P55082 362 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms