RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 TRMT1LQ7Z2T5 733 aaKnown RBP14.81□□□□□ -0.04
HMGB1-202ENST00000339872 CCDC112Q8NEF3 446 aa14.81□□□□□ -0.04
HMGB1-202ENST00000339872 NOC4LQ9BVI4 516 aaKnown RBP14.81□□□□□ -0.04
HMGB1-202ENST00000339872 KCTD10Q9H3F6 313 aa14.81□□□□□ -0.04
HMGB1-202ENST00000339872 PARVGQ9HBI0 331 aa14.81□□□□□ -0.04
HMGB1-202ENST00000339872 JPH1Q9HDC5 661 aaPredicted RBP14.81□□□□□ -0.04
HMGB1-202ENST00000339872 OLFML3Q9NRN5 406 aa14.81□□□□□ -0.04
HMGB1-202ENST00000339872 ODF2LQ9ULJ1 636 aa14.81□□□□□ -0.04
HMGB1-202ENST00000339872 NFASCO94856 1347 aa14.81□□□□□ -0.04
HMGB1-202ENST00000339872 SOWAHBA6NEL2 793 aa14.81□□□□□ -0.04
HMGB1-202ENST00000339872 SPATA31C2B4DYI2 1134 aa14.81□□□□□ -0.04
HMGB1-202ENST00000339872 SORBS3O60504 671 aa14.81□□□□□ -0.04
HMGB1-202ENST00000339872 EIF3JO75822 258 aaKnown RBP14.81□□□□□ -0.04
HMGB1-202ENST00000339872 LYPLA2O95372 231 aa14.81□□□□□ -0.04
HMGB1-202ENST00000339872 CYP2C8P10632 490 aa14.81□□□□□ -0.04
HMGB1-202ENST00000339872 COPB2P35606 906 aa14.81□□□□□ -0.04
HMGB1-202ENST00000339872 FKBP1BP68106 108 aa14.81□□□□□ -0.04
HMGB1-202ENST00000339872 FKBP3Q00688 224 aaKnown RBP14.81□□□□□ -0.04
HMGB1-202ENST00000339872 RBL2Q08999 1139 aa14.81□□□□□ -0.04
HMGB1-202ENST00000339872 WDR78Q5VTH9 848 aa14.81□□□□□ -0.04
HMGB1-202ENST00000339872 EPM2AIP1Q7L775 607 aaPredicted RBP14.81□□□□□ -0.04
HMGB1-202ENST00000339872 RDM1Q8NG50 284 aa14.81□□□□□ -0.04
HMGB1-202ENST00000339872 CPLX3Q8WVH0 158 aa14.81□□□□□ -0.04
HMGB1-202ENST00000339872 SENP7Q9BQF6 1050 aa14.81□□□□□ -0.04
HMGB1-202ENST00000339872 DBR1Q9UK59 544 aaKnown RBP14.81□□□□□ -0.04
HMGB1-202ENST00000339872 PNMA3Q9UL41 463 aa14.81□□□□□ -0.04
HMGB1-202ENST00000339872 PCDHA10Q9Y5I2 948 aa14.81□□□□□ -0.04
HMGB1-202ENST00000339872 AKR1B15C9JRZ8 316 aaPredicted RBP14.8□□□□□ -0.04
HMGB1-202ENST00000339872 NKRFO15226 690 aaKnown RBP eCLIP14.8□□□□□ -0.04
HMGB1-202ENST00000339872 PRPF6O94906 941 aaKnown RBP14.8□□□□□ -0.04
HMGB1-202ENST00000339872 CELF2O95319 508 aaKnown RBP14.8□□□□□ -0.04
HMGB1-202ENST00000339872 GUCY2CP25092 1073 aa14.8□□□□□ -0.04
HMGB1-202ENST00000339872 RARRES1P49788 294 aa14.8□□□□□ -0.04
HMGB1-202ENST00000339872 SEPT14Q6ZU15 432 aa14.8□□□□□ -0.04
HMGB1-202ENST00000339872 C4orf19Q8IY42 314 aa14.8□□□□□ -0.04
HMGB1-202ENST00000339872 SMAP1Q8IYB5 467 aaPredicted RBP14.8□□□□□ -0.04
HMGB1-202ENST00000339872 FAM133AQ8N9E0 248 aa14.8□□□□□ -0.04
HMGB1-202ENST00000339872 SLC9A2Q9UBY0 812 aa14.8□□□□□ -0.04
HMGB1-202ENST00000339872 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.8□□□□□ -0.043e-7■■■■□ 26.4
HMGB1-202ENST00000339872 ARID2Q68CP9 1835 aa14.8□□□□□ -0.04
HMGB1-202ENST00000339872 TMEM150BA6NC51 233 aa14.8□□□□□ -0.04
HMGB1-202ENST00000339872 GYPCP04921 128 aa14.8□□□□□ -0.04
HMGB1-202ENST00000339872 TPM1P09493 284 aa14.8□□□□□ -0.04
HMGB1-202ENST00000339872 CETPP11597 493 aa14.8□□□□□ -0.04
HMGB1-202ENST00000339872 DNM2P50570 870 aa14.8□□□□□ -0.04
HMGB1-202ENST00000339872 ERVK-9P63128 1117 aa14.8□□□□□ -0.04
HMGB1-202ENST00000339872 ERVK-24P63145 666 aa14.8□□□□□ -0.04
HMGB1-202ENST00000339872 MIIPQ5JXC2 388 aa14.8□□□□□ -0.04
HMGB1-202ENST00000339872 DNTTIP2Q5QJE6 756 aaKnown RBP14.8□□□□□ -0.04
HMGB1-202ENST00000339872 UTP14CQ5TAP6 766 aaKnown RBP14.8□□□□□ -0.04
HMGB1-202ENST00000339872 C2orf69Q8N8R5 385 aa14.8□□□□□ -0.04
HMGB1-202ENST00000339872 ZNF507Q8TCN5 953 aa14.8□□□□□ -0.04
HMGB1-202ENST00000339872 SMCR8Q8TEV9 937 aaPredicted RBP14.8□□□□□ -0.04
HMGB1-202ENST00000339872 SH2D3AQ9BRG2 576 aa14.8□□□□□ -0.04
HMGB1-202ENST00000339872 CCL15-CCL14A0A0B4J2E2 113 aa14.79□□□□□ -0.04
HMGB1-202ENST00000339872 USO1O60763 962 aaKnown RBP14.79□□□□□ -0.04
HMGB1-202ENST00000339872 HIP1RO75146 1068 aa14.79□□□□□ -0.04
HMGB1-202ENST00000339872 OFD1O75665 1012 aa14.79□□□□□ -0.04
HMGB1-202ENST00000339872 PGK2P07205 417 aa14.79□□□□□ -0.04
HMGB1-202ENST00000339872 NMT1P30419 496 aaKnown RBP14.79□□□□□ -0.04
HMGB1-202ENST00000339872 CASP14P31944 242 aa14.79□□□□□ -0.04
HMGB1-202ENST00000339872 GTF2A2P52657 109 aa14.79□□□□□ -0.04
HMGB1-202ENST00000339872 ZNF131P52739 623 aa14.79□□□□□ -0.04
HMGB1-202ENST00000339872 KCTD2Q14681 263 aa14.79□□□□□ -0.04
HMGB1-202ENST00000339872 CCL15Q16663 113 aa14.79□□□□□ -0.04
HMGB1-202ENST00000339872 KNOP1Q1ED39 458 aaKnown RBP14.79□□□□□ -0.04
HMGB1-202ENST00000339872 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.79□□□□□ -0.04
HMGB1-202ENST00000339872 PPP4R3CPQ6ZMV5 832 aa14.79□□□□□ -0.04
HMGB1-202ENST00000339872 MAEAQ7L5Y9 396 aa14.79□□□□□ -0.04
HMGB1-202ENST00000339872 MMP19Q99542 508 aa14.79□□□□□ -0.04
HMGB1-202ENST00000339872 TMX1Q9H3N1 280 aa14.79□□□□□ -0.04
HMGB1-202ENST00000339872 GABBR1Q9UBS5 961 aa14.79□□□□□ -0.04
HMGB1-202ENST00000339872 SEL1LQ9UBV2 794 aa14.79□□□□□ -0.04
HMGB1-202ENST00000339872 TELO2Q9Y4R8 837 aa14.79□□□□□ -0.04
HMGB1-202ENST00000339872 ZNFX1Q9P2E3 1918 aaKnown RBP14.79□□□□□ -0.04
HMGB1-202ENST00000339872 A0A1W2PQC6 194 aa14.78□□□□□ -0.04
HMGB1-202ENST00000339872 PDHXO00330 501 aa14.78□□□□□ -0.04
HMGB1-202ENST00000339872 PSAPP07602 524 aa14.78□□□□□ -0.04
HMGB1-202ENST00000339872 EDNRBP24530 442 aa14.78□□□□□ -0.04
HMGB1-202ENST00000339872 ICAM3P32942 547 aa14.78□□□□□ -0.04
HMGB1-202ENST00000339872 HOXD13P35453 343 aa14.78□□□□□ -0.04
HMGB1-202ENST00000339872 SP2Q02086 613 aa14.78□□□□□ -0.04
HMGB1-202ENST00000339872 BMT2Q1RMZ1 405 aa14.78□□□□□ -0.04
HMGB1-202ENST00000339872 ODR4Q5SWX8 454 aa14.78□□□□□ -0.04
HMGB1-202ENST00000339872 PLA2G4FQ68DD2 849 aa14.78□□□□□ -0.04
HMGB1-202ENST00000339872 TMEM139Q8IV31 216 aa14.78□□□□□ -0.04
HMGB1-202ENST00000339872 FAM178BQ8IXR5 827 aa14.78□□□□□ -0.04
HMGB1-202ENST00000339872 MS4A4AQ96JQ5 239 aa14.78□□□□□ -0.04
HMGB1-202ENST00000339872 CEP63Q96MT8 703 aa14.78□□□□□ -0.04
HMGB1-202ENST00000339872 BAG1Q99933 345 aaPredicted RBP14.78□□□□□ -0.04
HMGB1-202ENST00000339872 BACH1O14867 736 aa14.78□□□□□ -0.04
HMGB1-202ENST00000339872 MFAP3LO75121 409 aa14.78□□□□□ -0.04
HMGB1-202ENST00000339872 FXR1P51114 621 aaKnown RBP eCLIP14.78□□□□□ -0.04
HMGB1-202ENST00000339872 ACTR2P61160 394 aa14.78□□□□□ -0.04
HMGB1-202ENST00000339872 TBC1D8BQ0IIM8 1120 aa14.78□□□□□ -0.04
HMGB1-202ENST00000339872 MAPK7Q13164 816 aa14.78□□□□□ -0.04
HMGB1-202ENST00000339872 TRIM14Q14142 442 aa14.78□□□□□ -0.04
HMGB1-202ENST00000339872 MAN2A1Q16706 1144 aa14.78□□□□□ -0.04
HMGB1-202ENST00000339872 EDRF1Q3B7T1 1238 aa14.78□□□□□ -0.04
HMGB1-202ENST00000339872 CCDC40Q4G0X9 1142 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms