RNA–Protein interactions for RNA: ENST00000321356.8

CLK1-201, Transcript of CDC like kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK1, Length 1,888 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-201ENST00000321356 PDCLQ13371 301 aa9.53□□□□□ -0.88
CLK1-201ENST00000321356 IFI16Q16666 785 aaKnown RBP9.53□□□□□ -0.88
CLK1-201ENST00000321356 EXOC3L4Q17RC7 722 aa9.53□□□□□ -0.88
CLK1-201ENST00000321356 Q4G0T1 1027 aa9.53□□□□□ -0.88
CLK1-201ENST00000321356 MCTP2Q6DN12 878 aa9.53□□□□□ -0.88
CLK1-201ENST00000321356 SLFN11Q7Z7L1 901 aa9.53□□□□□ -0.88
CLK1-201ENST00000321356 SH2D3CQ8N5H7 860 aa9.53□□□□□ -0.88
CLK1-201ENST00000321356 SYT2Q8N9I0 419 aaPredicted RBP9.53□□□□□ -0.88
CLK1-201ENST00000321356 RBM46Q8TBY0 533 aaKnown RBP9.53□□□□□ -0.88
CLK1-201ENST00000321356 DCAF4Q8WV16 495 aa9.53□□□□□ -0.88
CLK1-201ENST00000321356 TAF4BQ92750 862 aa9.53□□□□□ -0.88
CLK1-201ENST00000321356 MKL1Q969V6 931 aa9.53□□□□□ -0.88
CLK1-201ENST00000321356 LENG9Q96B70 501 aa9.53□□□□□ -0.88
CLK1-201ENST00000321356 CCDC17Q96LX7 622 aa9.53□□□□□ -0.88
CLK1-201ENST00000321356 P2RX7Q99572 595 aaKnown RBP9.53□□□□□ -0.88
CLK1-201ENST00000321356 REEP2Q9BRK0 252 aa9.53□□□□□ -0.88
CLK1-201ENST00000321356 PAGR1Q9BTK6 254 aa9.53□□□□□ -0.88
CLK1-201ENST00000321356 ISCUQ9H1K1 167 aa9.53□□□□□ -0.88
CLK1-201ENST00000321356 SIX2Q9NPC8 291 aa9.53□□□□□ -0.88
CLK1-201ENST00000321356 USP40Q9NVE5 1235 aa9.53□□□□□ -0.88
CLK1-201ENST00000321356 PCDHA1Q9Y5I3 950 aa9.53□□□□□ -0.88
CLK1-201ENST00000321356 FAM169AQ9Y6X4 670 aa9.53□□□□□ -0.88
CLK1-201ENST00000321356 A0A0A6YYK5 440 aaPredicted RBP9.53□□□□□ -0.88
CLK1-201ENST00000321356 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.53□□□□□ -0.88
CLK1-201ENST00000321356 SRRM3A6NNA2 597 aaPredicted RBP9.53□□□□□ -0.88
CLK1-201ENST00000321356 KCNK3O14649 394 aa9.53□□□□□ -0.88
CLK1-201ENST00000321356 SLC16A3O15427 465 aaKnown RBP9.53□□□□□ -0.88
CLK1-201ENST00000321356 KRT18P05783 430 aaKnown RBP9.53□□□□□ -0.88
CLK1-201ENST00000321356 DNA2P51530 1060 aa9.53□□□□□ -0.88
CLK1-201ENST00000321356 GUCY2FP51841 1108 aa9.53□□□□□ -0.88
CLK1-201ENST00000321356 PSMC6P62333 389 aa9.53□□□□□ -0.88
CLK1-201ENST00000321356 ERVK-9P63128 1117 aa9.53□□□□□ -0.88
CLK1-201ENST00000321356 ARHGAP4P98171 946 aa9.53□□□□□ -0.88
CLK1-201ENST00000321356 CUL1Q13616 776 aa9.53□□□□□ -0.88
CLK1-201ENST00000321356 TRADDQ15628 312 aa9.53□□□□□ -0.88
CLK1-201ENST00000321356 CDC42EP5Q6NZY7 148 aa9.53□□□□□ -0.88
CLK1-201ENST00000321356 ALKBH5Q6P6C2 394 aaKnown RBP9.53□□□□□ -0.88
CLK1-201ENST00000321356 LRIG3Q6UXM1 1119 aa9.53□□□□□ -0.88
CLK1-201ENST00000321356 SFR1Q86XK3 245 aa9.53□□□□□ -0.88
CLK1-201ENST00000321356 TPCN2Q8NHX9 752 aa9.53□□□□□ -0.88
CLK1-201ENST00000321356 ATP6V1G3Q96LB4 118 aa9.53□□□□□ -0.88
CLK1-201ENST00000321356 DNAJC18Q9H819 358 aa9.53□□□□□ -0.88
CLK1-201ENST00000321356 INTUQ9ULD6 942 aa9.53□□□□□ -0.88
CLK1-201ENST00000321356 STXBP5LQ9Y2K9 1186 aa9.53□□□□□ -0.88
CLK1-201ENST00000321356 ASTN1O14525 1302 aa9.52□□□□□ -0.89
CLK1-201ENST00000321356 GTPBP10A4D1E9 387 aaKnown RBP9.52□□□□□ -0.89
CLK1-201ENST00000321356 HMGB1P1B2RPK0 211 aaPredicted RBP9.52□□□□□ -0.89
CLK1-201ENST00000321356 CALUO43852 315 aaPredicted RBP9.52□□□□□ -0.89
CLK1-201ENST00000321356 FLOT1O75955 427 aa9.52□□□□□ -0.89
CLK1-201ENST00000321356 AKAP3O75969 853 aa9.52□□□□□ -0.89
CLK1-201ENST00000321356 HLA-DOAP06340 250 aa9.52□□□□□ -0.89
CLK1-201ENST00000321356 XRCC5P13010 732 aaKnown RBP9.52□□□□□ -0.89
CLK1-201ENST00000321356 NR1D1P20393 614 aa9.52□□□□□ -0.89
CLK1-201ENST00000321356 LSP1P33241 339 aa9.52□□□□□ -0.89
CLK1-201ENST00000321356 MMP14P50281 582 aa9.52□□□□□ -0.89
CLK1-201ENST00000321356 ENOX2Q16206 610 aaKnown RBP9.52□□□□□ -0.89
CLK1-201ENST00000321356 KCTD16Q68DU8 428 aa9.52□□□□□ -0.89
CLK1-201ENST00000321356 TTC19Q6DKK2 380 aaPredicted RBP9.52□□□□□ -0.89
CLK1-201ENST00000321356 APOBEC3HQ6NTF7 200 aaKnown RBP9.52□□□□□ -0.89
CLK1-201ENST00000321356 HHIPL2Q6UWX4 724 aa9.52□□□□□ -0.89
CLK1-201ENST00000321356 SP8Q8IXZ3 490 aa9.52□□□□□ -0.89
CLK1-201ENST00000321356 OLIG1Q8TAK6 271 aa9.52□□□□□ -0.89
CLK1-201ENST00000321356 ERMNQ8TAM6 284 aa9.52□□□□□ -0.89
CLK1-201ENST00000321356 SLC35C1Q96A29 364 aa9.52□□□□□ -0.89
CLK1-201ENST00000321356 BORCS6Q96GS4 357 aa9.52□□□□□ -0.89
CLK1-201ENST00000321356 RNPC3Q96LT9 517 aaKnown RBP9.52□□□□□ -0.89
CLK1-201ENST00000321356 SPAG5Q96R06 1193 aa9.52□□□□□ -0.89
CLK1-201ENST00000321356 UIMC1Q96RL1 719 aa9.52□□□□□ -0.89
CLK1-201ENST00000321356 METTL14Q9HCE5 456 aaKnown RBP9.52□□□□□ -0.89
CLK1-201ENST00000321356 LRRC4BQ9NT99 713 aa9.52□□□□□ -0.89
CLK1-201ENST00000321356 TYW1Q9NV66 732 aaKnown RBP9.52□□□□□ -0.89
CLK1-201ENST00000321356 NYAP2Q9P242 653 aa9.52□□□□□ -0.89
CLK1-201ENST00000321356 DNM3Q9UQ16 869 aa9.52□□□□□ -0.89
CLK1-201ENST00000321356 STK24Q9Y6E0 443 aa9.52□□□□□ -0.89
CLK1-201ENST00000321356 NRXN2Q9P2S2 1712 aa9.52□□□□□ -0.89
CLK1-201ENST00000321356 ANKRD31Q8N7Z5 1873 aa9.52□□□□□ -0.89
CLK1-201ENST00000321356 VGLL3A8MV65 326 aa9.51□□□□□ -0.89
CLK1-201ENST00000321356 H0YGN5 161 aa9.51□□□□□ -0.89
CLK1-201ENST00000321356 PGRMC1O00264 195 aaKnown RBP9.51□□□□□ -0.89
CLK1-201ENST00000321356 MPHOSPH10O00566 681 aaKnown RBP9.51□□□□□ -0.89
CLK1-201ENST00000321356 GFPT2O94808 682 aa9.51□□□□□ -0.89
CLK1-201ENST00000321356 NR3C1P04150 777 aa9.51□□□□□ -0.89
CLK1-201ENST00000321356 CIITAP33076 1130 aa9.51□□□□□ -0.89
CLK1-201ENST00000321356 SREBF1P36956 1147 aa9.51□□□□□ -0.89
CLK1-201ENST00000321356 NPEPPSP55786 919 aa9.51□□□□□ -0.89
CLK1-201ENST00000321356 PABPC4Q13310 644 aaKnown RBP eCLIP9.51□□□□□ -0.89
CLK1-201ENST00000321356 FAM182BQ5T319 152 aa9.51□□□□□ -0.89
CLK1-201ENST00000321356 B4GALNT4Q76KP1 1039 aa9.51□□□□□ -0.89
CLK1-201ENST00000321356 SPATS2Q86XZ4 545 aaKnown RBP9.51□□□□□ -0.89
CLK1-201ENST00000321356 RASGEF1CQ8N431 466 aa9.51□□□□□ -0.89
CLK1-201ENST00000321356 KCTD17Q8N5Z5 321 aa9.51□□□□□ -0.89
CLK1-201ENST00000321356 NGLY1Q96IV0 654 aa9.51□□□□□ -0.89
CLK1-201ENST00000321356 FAM20AQ96MK3 541 aa9.51□□□□□ -0.89
CLK1-201ENST00000321356 C8orf37Q96NL8 207 aa9.51□□□□□ -0.89
CLK1-201ENST00000321356 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.51□□□□□ -0.898e-10■■□□□ 13.9
CLK1-201ENST00000321356 EPN3Q9H201 632 aa9.51□□□□□ -0.89
CLK1-201ENST00000321356 ZHX3Q9H4I2 956 aa9.51□□□□□ -0.89
CLK1-201ENST00000321356 OLFML3Q9NRN5 406 aa9.51□□□□□ -0.89
CLK1-201ENST00000321356 SUCLA2Q9P2R7 463 aaPredicted RBP9.51□□□□□ -0.89
CLK1-201ENST00000321356 AJAP1Q9UKB5 411 aaPredicted RBP9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms