RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 P4HBP07237 508 aaKnown RBP15.8■□□□□ 0.12
CLN3-242ENST00000635958 CYP2B6P20813 491 aa15.8■□□□□ 0.12
CLN3-242ENST00000635958 TTLL4Q14679 1199 aa15.8■□□□□ 0.12
CLN3-242ENST00000635958 KIF22Q14807 665 aa15.8■□□□□ 0.12
CLN3-242ENST00000635958 ZRSR1Q15695 479 aaKnown RBP15.8■□□□□ 0.12
CLN3-242ENST00000635958 POTEBQ6S5H4 581 aa15.8■□□□□ 0.12
CLN3-242ENST00000635958 METTL7BQ6UX53 244 aa15.8■□□□□ 0.12
CLN3-242ENST00000635958 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.8■□□□□ 0.12
CLN3-242ENST00000635958 SPATA20Q8TB22 786 aa15.8■□□□□ 0.12
CLN3-242ENST00000635958 RGL1Q9NZL6 768 aa15.8■□□□□ 0.12
CLN3-242ENST00000635958 FLRT1Q9NZU1 646 aa15.8■□□□□ 0.12
CLN3-242ENST00000635958 TCEAL9Q9UHQ7 104 aa15.8■□□□□ 0.12
CLN3-242ENST00000635958 KIAA1024Q9UPX6 916 aa15.8■□□□□ 0.12
CLN3-242ENST00000635958 PCDHA10Q9Y5I2 948 aa15.8■□□□□ 0.12
CLN3-242ENST00000635958 FOXN1O15353 648 aa15.8■□□□□ 0.12
CLN3-242ENST00000635958 FARP2O94887 1054 aaPredicted RBP15.8■□□□□ 0.12
CLN3-242ENST00000635958 LYPLA2O95372 231 aa15.8■□□□□ 0.12
CLN3-242ENST00000635958 MYL1P05976 194 aa15.8■□□□□ 0.12
CLN3-242ENST00000635958 ACVR2BQ13705 512 aa15.8■□□□□ 0.12
CLN3-242ENST00000635958 POSTNQ15063 836 aa15.8■□□□□ 0.12
CLN3-242ENST00000635958 LY6KQ17RY6 165 aa15.8■□□□□ 0.12
CLN3-242ENST00000635958 CELF3Q5SZQ8 465 aaKnown RBP15.8■□□□□ 0.12
CLN3-242ENST00000635958 ABHD15Q6UXT9 468 aa15.8■□□□□ 0.12
CLN3-242ENST00000635958 CYFIP1Q7L576 1253 aa15.8■□□□□ 0.12
CLN3-242ENST00000635958 KCNK18Q7Z418 384 aa15.8■□□□□ 0.12
CLN3-242ENST00000635958 CKAP2LQ8IYA6 745 aa15.8■□□□□ 0.12
CLN3-242ENST00000635958 RAD54LQ92698 747 aa15.8■□□□□ 0.12
CLN3-242ENST00000635958 DYDC2Q96IM9 177 aa15.8■□□□□ 0.12
CLN3-242ENST00000635958 PDGFCQ9NRA1 345 aa15.8■□□□□ 0.12
CLN3-242ENST00000635958 TUBE1Q9UJT0 475 aa15.8■□□□□ 0.12
CLN3-242ENST00000635958 ECM2O94769 699 aaPredicted RBP15.79■□□□□ 0.12
CLN3-242ENST00000635958 TXNP10599 105 aaKnown RBP15.79■□□□□ 0.12
CLN3-242ENST00000635958 ACTR2P61160 394 aa15.79■□□□□ 0.12
CLN3-242ENST00000635958 CAP1Q01518 475 aa15.79■□□□□ 0.12
CLN3-242ENST00000635958 MAP2K1Q02750 393 aaPredicted RBP15.79■□□□□ 0.12
CLN3-242ENST00000635958 NT5DC1Q5TFE4 455 aa15.79■□□□□ 0.12
CLN3-242ENST00000635958 LARP4BQ92615 738 aaKnown RBP15.79■□□□□ 0.12
CLN3-242ENST00000635958 DNM3Q9UQ16 869 aa15.79■□□□□ 0.12
CLN3-242ENST00000635958 POTEFA5A3E0 1075 aa15.78■□□□□ 0.12
CLN3-242ENST00000635958 GTPBP6O43824 516 aaPredicted RBP15.78■□□□□ 0.12
CLN3-242ENST00000635958 GGPS1O95749 300 aa15.78■□□□□ 0.12
CLN3-242ENST00000635958 GNRH1P01148 92 aa15.78■□□□□ 0.12
CLN3-242ENST00000635958 QARSP47897 775 aaKnown RBP15.78■□□□□ 0.12
CLN3-242ENST00000635958 SARSP49591 514 aaKnown RBP15.78■□□□□ 0.12
CLN3-242ENST00000635958 CYP4A11Q02928 519 aa15.78■□□□□ 0.12
CLN3-242ENST00000635958 PNOCQ13519 176 aa15.78■□□□□ 0.12
CLN3-242ENST00000635958 CCL14Q16627 93 aa15.78■□□□□ 0.12
CLN3-242ENST00000635958 IQSEC1Q6DN90 963 aa15.78■□□□□ 0.12
CLN3-242ENST00000635958 POTEGQ6S5H5 508 aa15.78■□□□□ 0.12
CLN3-242ENST00000635958 SV2BQ7L1I2 683 aa15.78■□□□□ 0.12
CLN3-242ENST00000635958 TPH2Q8IWU9 490 aa15.78■□□□□ 0.12
CLN3-242ENST00000635958 ZSWIM4Q9H7M6 989 aa15.78■□□□□ 0.12
CLN3-242ENST00000635958 GABRQQ9UN88 632 aa15.78■□□□□ 0.12
CLN3-242ENST00000635958 IGKV6D-21A0A0A0MT36 114 aa15.78■□□□□ 0.12
CLN3-242ENST00000635958 AFMP43652 599 aa15.78■□□□□ 0.12
CLN3-242ENST00000635958 FLT3LGP49771 235 aa15.78■□□□□ 0.12
CLN3-242ENST00000635958 AMPD3Q01432 767 aa15.78■□□□□ 0.12
CLN3-242ENST00000635958 DPYDQ12882 1025 aa15.78■□□□□ 0.12
CLN3-242ENST00000635958 CTTNQ14247 550 aaKnown RBP15.78■□□□□ 0.12
CLN3-242ENST00000635958 CNNM4Q6P4Q7 775 aa15.78■□□□□ 0.12
CLN3-242ENST00000635958 C4orf19Q8IY42 314 aa15.78■□□□□ 0.12
CLN3-242ENST00000635958 GRAMD1CQ8IYS0 662 aa15.78■□□□□ 0.12
CLN3-242ENST00000635958 NACC1Q96RE7 527 aa15.78■□□□□ 0.12
CLN3-242ENST00000635958 C7orf25Q9BPX7 421 aa15.78■□□□□ 0.12
CLN3-242ENST00000635958 LXNQ9BS40 222 aa15.78■□□□□ 0.12
CLN3-242ENST00000635958 WBP1LQ9NX94 342 aa15.78■□□□□ 0.12
CLN3-242ENST00000635958 WRAP73Q9P2S5 460 aaPredicted RBP15.78■□□□□ 0.12
CLN3-242ENST00000635958 NRBP1Q9UHY1 535 aa15.78■□□□□ 0.12
CLN3-242ENST00000635958 SAMM50Q9Y512 469 aa15.78■□□□□ 0.12
CLN3-242ENST00000635958 PCDHA5Q9Y5H7 936 aa15.78■□□□□ 0.12
CLN3-242ENST00000635958 GSTTP1A0A1W2PQM5 241 aa15.77■□□□□ 0.11
CLN3-242ENST00000635958 E9PMD0 336 aa15.77■□□□□ 0.11
CLN3-242ENST00000635958 EYA4O95677 639 aa15.77■□□□□ 0.11
CLN3-242ENST00000635958 PSAPP07602 524 aa15.77■□□□□ 0.11
CLN3-242ENST00000635958 PRR29P0C7W0 189 aa15.77■□□□□ 0.11
CLN3-242ENST00000635958 ZNF865P0CJ78 1059 aaPredicted RBP15.77■□□□□ 0.11
CLN3-242ENST00000635958 HOXD10P28358 340 aa15.77■□□□□ 0.11
CLN3-242ENST00000635958 PSMC5P62195 406 aa15.77■□□□□ 0.11
CLN3-242ENST00000635958 PSMC6P62333 389 aa15.77■□□□□ 0.11
CLN3-242ENST00000635958 MCM6Q14566 821 aa15.77■□□□□ 0.11
CLN3-242ENST00000635958 COL13A1Q5TAT6 717 aaPredicted RBP15.77■□□□□ 0.11
CLN3-242ENST00000635958 MIS18BP1Q6P0N0 1132 aa15.77■□□□□ 0.11
CLN3-242ENST00000635958 DHX37Q8IY37 1157 aaKnown RBP15.77■□□□□ 0.11
CLN3-242ENST00000635958 TRMT44Q8IYL2 757 aaKnown RBP15.77■□□□□ 0.11
CLN3-242ENST00000635958 SYT2Q8N9I0 419 aaPredicted RBP15.77■□□□□ 0.11
CLN3-242ENST00000635958 KIAA1524Q8TCG1 905 aa15.77■□□□□ 0.11
CLN3-242ENST00000635958 EMID1Q96A84 441 aaPredicted RBP15.77■□□□□ 0.11
CLN3-242ENST00000635958 LRRC27Q9C0I9 530 aa15.77■□□□□ 0.11
CLN3-242ENST00000635958 MLXIPQ9HAP2 919 aa15.77■□□□□ 0.11
CLN3-242ENST00000635958 TELO2Q9Y4R8 837 aa15.77■□□□□ 0.11
CLN3-242ENST00000635958 DOCK5Q9H7D0 1870 aa15.77■□□□□ 0.11
CLN3-242ENST00000635958 ZSWIM8A7E2V4 1837 aa15.77■□□□□ 0.11
CLN3-242ENST00000635958 NKRFO15226 690 aaKnown RBP eCLIP15.76■□□□□ 0.11
CLN3-242ENST00000635958 DKC1O60832 514 aaKnown RBP eCLIP15.76■□□□□ 0.11
CLN3-242ENST00000635958 FKTNO75072 461 aa15.76■□□□□ 0.11
CLN3-242ENST00000635958 SUPT20HL2P0C7V6 817 aa15.76■□□□□ 0.11
CLN3-242ENST00000635958 PLA2G4BP0C869 781 aa15.76■□□□□ 0.11
CLN3-242ENST00000635958 ADCYAP1R1P41586 468 aa15.76■□□□□ 0.11
CLN3-242ENST00000635958 SLC12A3P55017 1021 aa15.76■□□□□ 0.11
CLN3-242ENST00000635958 PRKCZQ05513 592 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms