RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 PCDHA10Q9Y5I2 948 aa22.19■■□□□ 1.14
UPF3A-211ENST00000618700 SCN10AQ9Y5Y9 1956 aa22.18■■□□□ 1.14
UPF3A-211ENST00000618700 IGSF9BQ9UPX0 1349 aa22.18■■□□□ 1.14
UPF3A-211ENST00000618700 PSAPP07602 524 aa22.18■■□□□ 1.14
UPF3A-211ENST00000618700 MYL3P08590 195 aa22.18■■□□□ 1.14
UPF3A-211ENST00000618700 EN2P19622 333 aaPredicted RBP22.18■■□□□ 1.14
UPF3A-211ENST00000618700 TECP42680 631 aa22.18■■□□□ 1.14
UPF3A-211ENST00000618700 KRT85P78386 507 aa22.18■■□□□ 1.14
UPF3A-211ENST00000618700 TMEM266Q2M3C6 531 aa22.18■■□□□ 1.14
UPF3A-211ENST00000618700 CXCL17Q6UXB2 119 aa22.18■■□□□ 1.14
UPF3A-211ENST00000618700 DTHD1Q6ZMT9 781 aa22.18■■□□□ 1.14
UPF3A-211ENST00000618700 TRIM50Q86XT4 487 aa22.18■■□□□ 1.14
UPF3A-211ENST00000618700 KAT2BQ92831 832 aa22.18■■□□□ 1.14
UPF3A-211ENST00000618700 A0A1W2PQ45 241 aaPredicted RBP22.17■■□□□ 1.14
UPF3A-211ENST00000618700 A0A1W2PQY0 241 aa22.17■■□□□ 1.14
UPF3A-211ENST00000618700 COL6A1P12109 1028 aa22.17■■□□□ 1.14
UPF3A-211ENST00000618700 PDIA5Q14554 519 aa22.17■■□□□ 1.14
UPF3A-211ENST00000618700 GSE1Q14687 1217 aa22.17■■□□□ 1.14
UPF3A-211ENST00000618700 STK38Q15208 465 aa22.17■■□□□ 1.14
UPF3A-211ENST00000618700 UBE2Q1Q7Z7E8 422 aa22.17■■□□□ 1.14
UPF3A-211ENST00000618700 AFAP1L1Q8TED9 768 aa22.17■■□□□ 1.14
UPF3A-211ENST00000618700 DIS3LQ8TF46 1054 aaKnown RBP22.17■■□□□ 1.14
UPF3A-211ENST00000618700 MTG1Q9BT17 334 aaPredicted RBP22.17■■□□□ 1.14
UPF3A-211ENST00000618700 FBXO2Q9UK22 296 aaPredicted RBP22.17■■□□□ 1.14
UPF3A-211ENST00000618700 SAMM50Q9Y512 469 aa22.17■■□□□ 1.14
UPF3A-211ENST00000618700 SRPRBQ9Y5M8 271 aaKnown RBP22.17■■□□□ 1.14
UPF3A-211ENST00000618700 VWA3AA6NCI4 1184 aa22.16■■□□□ 1.14
UPF3A-211ENST00000618700 HAS3O00219 553 aa22.16■■□□□ 1.14
UPF3A-211ENST00000618700 SPTLC2O15270 562 aa22.16■■□□□ 1.14
UPF3A-211ENST00000618700 CABYRO75952 493 aa22.16■■□□□ 1.14
UPF3A-211ENST00000618700 MARCKSP29966 332 aaPredicted RBP22.16■■□□□ 1.14
UPF3A-211ENST00000618700 MLLT1Q03111 559 aaPredicted RBP22.16■■□□□ 1.14
UPF3A-211ENST00000618700 EPHA7Q15375 998 aa22.16■■□□□ 1.14
UPF3A-211ENST00000618700 UTP14CQ5TAP6 766 aaKnown RBP22.16■■□□□ 1.14
UPF3A-211ENST00000618700 KCNG4Q8TDN1 519 aa22.16■■□□□ 1.14
UPF3A-211ENST00000618700 FERMT2Q96AC1 680 aa22.16■■□□□ 1.14
UPF3A-211ENST00000618700 RAB34Q9BZG1 259 aa22.16■■□□□ 1.14
UPF3A-211ENST00000618700 RCOR1Q9UKL0 485 aa22.16■■□□□ 1.14
UPF3A-211ENST00000618700 PPP6R2O75170 966 aa22.15■■□□□ 1.14
UPF3A-211ENST00000618700 GRIN1Q05586 938 aa22.15■■□□□ 1.14
UPF3A-211ENST00000618700 UGCGQ16739 394 aa22.15■■□□□ 1.14
UPF3A-211ENST00000618700 SWSAP1Q6NVH7 229 aa22.15■■□□□ 1.14
UPF3A-211ENST00000618700 PLPPR4Q7Z2D5 763 aa22.15■■□□□ 1.14
UPF3A-211ENST00000618700 EIF2AK1Q9BQI3 630 aaKnown RBP22.15■■□□□ 1.14
UPF3A-211ENST00000618700 SMARCAD1Q9H4L7 1026 aa22.15■■□□□ 1.14
UPF3A-211ENST00000618700 AZI2Q9H6S1 392 aa22.15■■□□□ 1.14
UPF3A-211ENST00000618700 ZNF302Q9NR11 478 aa22.15■■□□□ 1.14
UPF3A-211ENST00000618700 ZNF215Q9UL58 517 aaPredicted RBP22.15■■□□□ 1.14
UPF3A-211ENST00000618700 MAFBQ9Y5Q3 323 aaPredicted RBP22.15■■□□□ 1.14
UPF3A-211ENST00000618700 WDR81Q562E7 1941 aa22.15■■□□□ 1.14
UPF3A-211ENST00000618700 BACH1O14867 736 aa22.14■■□□□ 1.13
UPF3A-211ENST00000618700 NCLP19338 710 aaKnown RBP22.14■■□□□ 1.13
UPF3A-211ENST00000618700 STAT5BP51692 787 aa22.14■■□□□ 1.13
UPF3A-211ENST00000618700 FAM160B1Q5W0V3 765 aa22.14■■□□□ 1.13
UPF3A-211ENST00000618700 KRI1Q8N9T8 703 aaKnown RBP22.14■■□□□ 1.13
UPF3A-211ENST00000618700 NEK9Q8TD19 979 aa22.14■■□□□ 1.13
UPF3A-211ENST00000618700 LEO1Q8WVC0 666 aaPredicted RBP22.14■■□□□ 1.13
UPF3A-211ENST00000618700 TNPO1Q92973 898 aaKnown RBP22.14■■□□□ 1.13
UPF3A-211ENST00000618700 GLT1D1Q96MS3 346 aa22.14■■□□□ 1.13
UPF3A-211ENST00000618700 HSD17B14Q9BPX1 270 aa22.14■■□□□ 1.13
UPF3A-211ENST00000618700 KATNAL1Q9BW62 490 aa22.14■■□□□ 1.13
UPF3A-211ENST00000618700 ERAP1Q9NZ08 941 aa22.14■■□□□ 1.13
UPF3A-211ENST00000618700 GABBR1Q9UBS5 961 aa22.14■■□□□ 1.13
UPF3A-211ENST00000618700 LRWD1Q9UFC0 647 aa22.14■■□□□ 1.13
UPF3A-211ENST00000618700 TCHHQ07283 1943 aa22.14■■□□□ 1.13
UPF3A-211ENST00000618700 PP2D1A8MPX8 630 aa22.13■■□□□ 1.13
UPF3A-211ENST00000618700 H3BRB1 525 aa22.13■■□□□ 1.13
UPF3A-211ENST00000618700 ZNF862O60290 1169 aa22.13■■□□□ 1.13
UPF3A-211ENST00000618700 LONP1P36776 959 aaKnown RBP22.13■■□□□ 1.13
UPF3A-211ENST00000618700 PSEN2P49810 448 aa22.13■■□□□ 1.13
UPF3A-211ENST00000618700 SLC26A2P50443 739 aa22.13■■□□□ 1.13
UPF3A-211ENST00000618700 PDXDC2PQ6P474 469 aa22.13■■□□□ 1.13
UPF3A-211ENST00000618700 GLG1Q92896 1179 aa22.13■■□□□ 1.13
UPF3A-211ENST00000618700 ATP6V0A1Q93050 837 aa22.13■■□□□ 1.13
UPF3A-211ENST00000618700 PAWRQ96IZ0 340 aaKnown RBP22.13■■□□□ 1.13
UPF3A-211ENST00000618700 AK8Q96MA6 479 aa22.13■■□□□ 1.13
UPF3A-211ENST00000618700 SCAND2PQ9GZW5 306 aaPredicted RBP22.13■■□□□ 1.13
UPF3A-211ENST00000618700 TUT1Q9H6E5 874 aaKnown RBP22.13■■□□□ 1.13
UPF3A-211ENST00000618700 GRIN2DO15399 1336 aa22.12■■□□□ 1.13
UPF3A-211ENST00000618700 DNAH12Q6ZR08 3092 aa22.12■■□□□ 1.13
UPF3A-211ENST00000618700 P4HBP07237 508 aaKnown RBP22.12■■□□□ 1.13
UPF3A-211ENST00000618700 ATP4AP20648 1035 aa22.12■■□□□ 1.13
UPF3A-211ENST00000618700 MFSD10Q14728 455 aa22.12■■□□□ 1.13
UPF3A-211ENST00000618700 BANK1Q8NDB2 785 aa22.12■■□□□ 1.13
UPF3A-211ENST00000618700 ERMNQ8TAM6 284 aa22.12■■□□□ 1.13
UPF3A-211ENST00000618700 DYDC2Q96IM9 177 aa22.12■■□□□ 1.13
UPF3A-211ENST00000618700 SPATA32Q96LK8 384 aa22.12■■□□□ 1.13
UPF3A-211ENST00000618700 LXNQ9BS40 222 aa22.12■■□□□ 1.13
UPF3A-211ENST00000618700 MMTAG2Q9BU76 263 aaKnown RBP22.12■■□□□ 1.13
UPF3A-211ENST00000618700 POLR3CQ9BUI4 534 aaPredicted RBP22.12■■□□□ 1.13
UPF3A-211ENST00000618700 CSRNP2Q9H175 543 aa22.12■■□□□ 1.13
UPF3A-211ENST00000618700 C11orf49Q9H6J7 331 aa22.12■■□□□ 1.13
UPF3A-211ENST00000618700 STARD7Q9NQZ5 370 aa22.12■■□□□ 1.13
UPF3A-211ENST00000618700 RGL1Q9NZL6 768 aa22.12■■□□□ 1.13
UPF3A-211ENST00000618700 WRAP73Q9P2S5 460 aaPredicted RBP22.12■■□□□ 1.13
UPF3A-211ENST00000618700 STK24Q9Y6E0 443 aa22.12■■□□□ 1.13
UPF3A-211ENST00000618700 SPATA31C1P0DKV0 1188 aa22.11■■□□□ 1.13
UPF3A-211ENST00000618700 MARK3P27448 753 aa22.11■■□□□ 1.13
UPF3A-211ENST00000618700 QARSP47897 775 aaKnown RBP22.11■■□□□ 1.13
UPF3A-211ENST00000618700 PSMC5P62195 406 aa22.11■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms