RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 ZNF536O15090 1300 aa4.73□□□□□ -1.65
NUP88-209ENST00000574855 ARID4BQ4LE39 1312 aaPredicted RBP4.73□□□□□ -1.65
NUP88-209ENST00000574855 CCDC66A2RUB6 948 aa4.73□□□□□ -1.65
NUP88-209ENST00000574855 ZNF839A8K0R7 811 aa4.73□□□□□ -1.65
NUP88-209ENST00000574855 PLATP00750 562 aa4.73□□□□□ -1.65
NUP88-209ENST00000574855 ITGB3P05106 788 aa4.73□□□□□ -1.65
NUP88-209ENST00000574855 KRT15P19012 456 aa4.73□□□□□ -1.65
NUP88-209ENST00000574855 GJA4P35212 333 aa4.73□□□□□ -1.65
NUP88-209ENST00000574855 DNM2P50570 870 aa4.73□□□□□ -1.65
NUP88-209ENST00000574855 LACTBP83111 547 aaPredicted RBP4.73□□□□□ -1.65
NUP88-209ENST00000574855 DBPQ10586 325 aaPredicted RBP4.73□□□□□ -1.65
NUP88-209ENST00000574855 SPATS1Q496A3 300 aa4.73□□□□□ -1.65
NUP88-209ENST00000574855 TBC1D10BQ4KMP7 808 aaPredicted RBP4.73□□□□□ -1.65
NUP88-209ENST00000574855 C2orf27AQ580R0 203 aa4.73□□□□□ -1.65
NUP88-209ENST00000574855 PHF19Q5T6S3 580 aa4.73□□□□□ -1.65
NUP88-209ENST00000574855 PTRH1Q86Y79 214 aaKnown RBP4.73□□□□□ -1.65
NUP88-209ENST00000574855 KLHL36Q8N4N3 616 aa4.73□□□□□ -1.65
NUP88-209ENST00000574855 ZCCHC14Q8WYQ9 949 aaKnown RBP4.73□□□□□ -1.65
NUP88-209ENST00000574855 OSBPL2Q9H1P3 480 aa4.73□□□□□ -1.65
NUP88-209ENST00000574855 SLC52A2Q9HAB3 445 aa4.73□□□□□ -1.65
NUP88-209ENST00000574855 ZFP69BQ9UJL9 534 aa4.73□□□□□ -1.65
NUP88-209ENST00000574855 CBLCQ9ULV8 474 aa4.73□□□□□ -1.65
NUP88-209ENST00000574855 ZDHHC9Q9Y397 364 aa4.73□□□□□ -1.65
NUP88-209ENST00000574855 FAM90A27PA6NNH2 459 aa4.72□□□□□ -1.65
NUP88-209ENST00000574855 MAN2B1O00754 1011 aa4.72□□□□□ -1.65
NUP88-209ENST00000574855 B4GALT3O60512 393 aa4.72□□□□□ -1.65
NUP88-209ENST00000574855 KNG1P01042 644 aa4.72□□□□□ -1.65
NUP88-209ENST00000574855 AMY2AP04746 511 aa4.72□□□□□ -1.65
NUP88-209ENST00000574855 COL6A1P12109 1028 aa4.72□□□□□ -1.65
NUP88-209ENST00000574855 AMY2BP19961 511 aa4.72□□□□□ -1.65
NUP88-209ENST00000574855 JAM2P57087 298 aa4.72□□□□□ -1.65
NUP88-209ENST00000574855 EFEMP1Q12805 493 aa4.72□□□□□ -1.65
NUP88-209ENST00000574855 NFATC3Q12968 1075 aa4.72□□□□□ -1.65
NUP88-209ENST00000574855 TRIM61Q5EBN2 209 aa4.72□□□□□ -1.65
NUP88-209ENST00000574855 FIGNQ5HY92 759 aa4.72□□□□□ -1.65
NUP88-209ENST00000574855 GLB1LQ6UWU2 654 aa4.72□□□□□ -1.65
NUP88-209ENST00000574855 DPP8Q6V1X1 898 aaPredicted RBP4.72□□□□□ -1.65
NUP88-209ENST00000574855 KBTBD2Q8IY47 623 aa4.72□□□□□ -1.65
NUP88-209ENST00000574855 LILRB2Q8N423 598 aa4.72□□□□□ -1.65
NUP88-209ENST00000574855 STPG3Q8N7X2 389 aa4.72□□□□□ -1.65
NUP88-209ENST00000574855 GSTCDQ8NEC7 633 aa4.72□□□□□ -1.65
NUP88-209ENST00000574855 RBM15Q96T37 977 aaKnown RBP eCLIP4.72□□□□□ -1.65
NUP88-209ENST00000574855 PSMD1Q99460 953 aa4.72□□□□□ -1.65
NUP88-209ENST00000574855 MRPL4Q9BYD3 311 aaKnown RBP4.72□□□□□ -1.65
NUP88-209ENST00000574855 BCCIPQ9P287 314 aaKnown RBP eCLIP4.72□□□□□ -1.65
NUP88-209ENST00000574855 ARHGAP28Q9P2N2 729 aa4.72□□□□□ -1.65
NUP88-209ENST00000574855 SFMBT1Q9UHJ3 866 aa4.72□□□□□ -1.65
NUP88-209ENST00000574855 ZNF561-AS1K7EIQ3 104 aa4.71□□□□□ -1.66
NUP88-209ENST00000574855 LAMTOR5O43504 91 aa4.71□□□□□ -1.66
NUP88-209ENST00000574855 KCNQ2O43526 872 aa4.71□□□□□ -1.66
NUP88-209ENST00000574855 B4GALT4O60513 344 aa4.71□□□□□ -1.66
NUP88-209ENST00000574855 CLASP2O75122 1294 aaKnown RBP4.71□□□□□ -1.66
NUP88-209ENST00000574855 KLHL18O94889 574 aa4.71□□□□□ -1.66
NUP88-209ENST00000574855 ZNF827Q17R98 1081 aa4.71□□□□□ -1.66
NUP88-209ENST00000574855 PKN3Q6P5Z2 889 aa4.71□□□□□ -1.66
NUP88-209ENST00000574855 ARHGEF18Q6ZSZ5 1173 aa4.71□□□□□ -1.66
NUP88-209ENST00000574855 Q6ZUG5 572 aa4.71□□□□□ -1.66
NUP88-209ENST00000574855 TICAM2Q86XR7 235 aa4.71□□□□□ -1.66
NUP88-209ENST00000574855 SLC7A14Q8TBB6 771 aa4.71□□□□□ -1.66
NUP88-209ENST00000574855 MBD6Q96DN6 1003 aa4.71□□□□□ -1.66
NUP88-209ENST00000574855 MRFAP1L1Q96HT8 127 aa4.71□□□□□ -1.66
NUP88-209ENST00000574855 DRC1Q96MC2 740 aa4.71□□□□□ -1.66
NUP88-209ENST00000574855 SLC39A2Q9NP94 309 aa4.71□□□□□ -1.66
NUP88-209ENST00000574855 KCND1Q9NSA2 647 aa4.71□□□□□ -1.66
NUP88-209ENST00000574855 ADAM29Q9UKF5 820 aa4.71□□□□□ -1.66
NUP88-209ENST00000574855 PTCH2Q9Y6C5 1203 aa4.71□□□□□ -1.66
NUP88-209ENST00000574855 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP4.7□□□□□ -1.66
NUP88-209ENST00000574855 H0Y858 1186 aa4.7□□□□□ -1.66
NUP88-209ENST00000574855 NPTXRO95502 500 aa4.7□□□□□ -1.66
NUP88-209ENST00000574855 ADRB1P08588 477 aa4.7□□□□□ -1.66
NUP88-209ENST00000574855 PPP2CBP62714 309 aa4.7□□□□□ -1.66
NUP88-209ENST00000574855 PPP2CAP67775 309 aa4.7□□□□□ -1.66
NUP88-209ENST00000574855 BMS1Q14692 1282 aaKnown RBP4.7□□□□□ -1.66
NUP88-209ENST00000574855 HHIPL2Q6UWX4 724 aa4.7□□□□□ -1.66
NUP88-209ENST00000574855 DBX2Q6ZNG2 339 aa4.7□□□□□ -1.66
NUP88-209ENST00000574855 NUDT10Q8NFP7 164 aa4.7□□□□□ -1.66
NUP88-209ENST00000574855 NUDT11Q96G61 164 aa4.7□□□□□ -1.66
NUP88-209ENST00000574855 BORCS6Q96GS4 357 aa4.7□□□□□ -1.66
NUP88-209ENST00000574855 SAMD11Q96NU1 681 aa4.7□□□□□ -1.66
NUP88-209ENST00000574855 TACO1Q9BSH4 297 aaKnown RBP4.7□□□□□ -1.66
NUP88-209ENST00000574855 CELF4Q9BZC1 486 aaKnown RBP4.7□□□□□ -1.66
NUP88-209ENST00000574855 SMURF1Q9HCE7 757 aa4.7□□□□□ -1.66
NUP88-209ENST00000574855 JADE2Q9NQC1 790 aa4.7□□□□□ -1.66
NUP88-209ENST00000574855 COQ6Q9Y2Z9 468 aa4.7□□□□□ -1.66
NUP88-209ENST00000574855 TCRBV16S1A1N1A0A5B0 115 aa4.69□□□□□ -1.66
NUP88-209ENST00000574855 NPEPPSL1A6NEC2 478 aa4.69□□□□□ -1.66
NUP88-209ENST00000574855 PRAMEF25A6NGN4 478 aa4.69□□□□□ -1.66
NUP88-209ENST00000574855 KCNK3O14649 394 aa4.69□□□□□ -1.66
NUP88-209ENST00000574855 PLD2O14939 933 aa4.69□□□□□ -1.66
NUP88-209ENST00000574855 RASGRP1O95267 797 aa4.69□□□□□ -1.66
NUP88-209ENST00000574855 IL18BPO95998 194 aa4.69□□□□□ -1.66
NUP88-209ENST00000574855 MAGEA10P43363 369 aaPredicted RBP4.69□□□□□ -1.66
NUP88-209ENST00000574855 HERVK_113P62684 666 aa4.69□□□□□ -1.66
NUP88-209ENST00000574855 TMED8Q6PL24 325 aaPredicted RBP4.69□□□□□ -1.66
NUP88-209ENST00000574855 ANKRD13AQ8IZ07 590 aa4.69□□□□□ -1.66
NUP88-209ENST00000574855 UBXN4Q92575 508 aa4.69□□□□□ -1.66
NUP88-209ENST00000574855 SCLYQ96I15 445 aa4.69□□□□□ -1.66
NUP88-209ENST00000574855 AJUBAQ96IF1 538 aa4.69□□□□□ -1.66
NUP88-209ENST00000574855 LOXL4Q96JB6 756 aa4.69□□□□□ -1.66
NUP88-209ENST00000574855 ZSWIM4Q9H7M6 989 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms