RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 NLRP5P59047 1200 aa11.8□□□□□ -0.52
CLK3-226ENST00000569406 LACTBP83111 547 aaPredicted RBP11.8□□□□□ -0.52
CLK3-226ENST00000569406 EVX2Q03828 476 aa11.8□□□□□ -0.52
CLK3-226ENST00000569406 CFAP157Q5JU67 520 aa11.8□□□□□ -0.52
CLK3-226ENST00000569406 IFNL3Q8IZI9 196 aa11.8□□□□□ -0.52
CLK3-226ENST00000569406 KIF2BQ8N4N8 673 aa11.8□□□□□ -0.52
CLK3-226ENST00000569406 MAP3K14Q99558 947 aa11.8□□□□□ -0.52
CLK3-226ENST00000569406 ETNK2Q9NVF9 386 aa11.8□□□□□ -0.52
CLK3-226ENST00000569406 ANGEL1Q9UNK9 670 aaKnown RBP11.8□□□□□ -0.52
CLK3-226ENST00000569406 PLAAQ9Y263 795 aa11.8□□□□□ -0.52
CLK3-226ENST00000569406 TSC22D4Q9Y3Q8 395 aa11.8□□□□□ -0.52
CLK3-226ENST00000569406 KIAA1551Q9HCM1 1747 aa11.8□□□□□ -0.52
CLK3-226ENST00000569406 IRS2Q9Y4H2 1338 aa11.8□□□□□ -0.52
CLK3-226ENST00000569406 SLC3A2P08195 630 aaKnown RBP11.79□□□□□ -0.52
CLK3-226ENST00000569406 USP11P51784 963 aa11.79□□□□□ -0.52
CLK3-226ENST00000569406 NDUFA8P51970 172 aa11.79□□□□□ -0.52
CLK3-226ENST00000569406 CTDSPL2Q05D32 466 aa11.79□□□□□ -0.52
CLK3-226ENST00000569406 MKRN4PQ13434 485 aaPredicted RBP11.79□□□□□ -0.52
CLK3-226ENST00000569406 CLPPQ16740 277 aaPredicted RBP11.79□□□□□ -0.52
CLK3-226ENST00000569406 RAD9BQ6WBX8 426 aa11.79□□□□□ -0.52
CLK3-226ENST00000569406 KRT27Q7Z3Y8 459 aa11.79□□□□□ -0.52
CLK3-226ENST00000569406 MAGEB6Q8N7X4 407 aa11.79□□□□□ -0.52
CLK3-226ENST00000569406 LZICQ8WZA0 190 aa11.79□□□□□ -0.52
CLK3-226ENST00000569406 TRAPPC9Q96Q05 1148 aa11.79□□□□□ -0.52
CLK3-226ENST00000569406 POLR3EQ9NVU0 708 aa11.79□□□□□ -0.52
CLK3-226ENST00000569406 TMED5Q9Y3A6 229 aa11.79□□□□□ -0.52
CLK3-226ENST00000569406 LY75O60449 1722 aa11.79□□□□□ -0.52
CLK3-226ENST00000569406 BOLA2-SMG1P6H3BVE0 249 aa11.79□□□□□ -0.52
CLK3-226ENST00000569406 SPTLC1O15269 473 aa11.79□□□□□ -0.52
CLK3-226ENST00000569406 TMOD1P28289 359 aa11.79□□□□□ -0.52
CLK3-226ENST00000569406 CHRNDQ07001 517 aa11.79□□□□□ -0.52
CLK3-226ENST00000569406 PTPAQ15257 358 aa11.79□□□□□ -0.52
CLK3-226ENST00000569406 RUFY4Q6ZNE9 571 aa11.79□□□□□ -0.52
CLK3-226ENST00000569406 DAAM2Q86T65 1068 aa11.79□□□□□ -0.52
CLK3-226ENST00000569406 SCUBE1Q8IWY4 988 aa11.79□□□□□ -0.52
CLK3-226ENST00000569406 NACC2Q96BF6 587 aa11.79□□□□□ -0.52
CLK3-226ENST00000569406 ARMT1Q9H993 441 aa11.79□□□□□ -0.52
CLK3-226ENST00000569406 DUOX1Q9NRD9 1551 aa11.79□□□□□ -0.52
CLK3-226ENST00000569406 EPB41P11171 864 aaKnown RBP11.79□□□□□ -0.52
CLK3-226ENST00000569406 SGSM1Q2NKQ1 1148 aa11.79□□□□□ -0.52
CLK3-226ENST00000569406 FOXB2Q5VYV0 432 aa11.79□□□□□ -0.52
CLK3-226ENST00000569406 SLC2A7Q6PXP3 512 aa11.79□□□□□ -0.52
CLK3-226ENST00000569406 PPP1R14BQ96C90 147 aa11.79□□□□□ -0.52
CLK3-226ENST00000569406 HAUS1Q96CS2 278 aa11.79□□□□□ -0.52
CLK3-226ENST00000569406 CCDC43Q96MW1 224 aaKnown RBP11.79□□□□□ -0.52
CLK3-226ENST00000569406 GPR101Q96P66 508 aaPredicted RBP11.79□□□□□ -0.52
CLK3-226ENST00000569406 MYL10Q9BUA6 226 aa11.79□□□□□ -0.52
CLK3-226ENST00000569406 CDCA7Q9BWT1 371 aaPredicted RBP11.79□□□□□ -0.52
CLK3-226ENST00000569406 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.79□□□□□ -0.521e-6■■□□□ 12.7
CLK3-226ENST00000569406 DRC3Q9H069 523 aa11.79□□□□□ -0.52
CLK3-226ENST00000569406 RMND1Q9NWS8 449 aa11.79□□□□□ -0.52
CLK3-226ENST00000569406 RASAL2Q9UJF2 1139 aa11.79□□□□□ -0.52
CLK3-226ENST00000569406 GUCA1BQ9UMX6 200 aa11.79□□□□□ -0.52
CLK3-226ENST00000569406 HEY1Q9Y5J3 304 aa11.79□□□□□ -0.52
CLK3-226ENST00000569406 PNPLA7Q6ZV29 1317 aa11.79□□□□□ -0.52
CLK3-226ENST00000569406 CCT8L1PA6NM43 557 aa11.78□□□□□ -0.52
CLK3-226ENST00000569406 GUCY1A2P33402 732 aa11.78□□□□□ -0.52
CLK3-226ENST00000569406 C2orf54Q08AI8 447 aa11.78□□□□□ -0.52
CLK3-226ENST00000569406 UCMAQ8WVF2 138 aa11.78□□□□□ -0.52
CLK3-226ENST00000569406 NDEL1Q9GZM8 345 aa11.78□□□□□ -0.52
CLK3-226ENST00000569406 HSD3B7Q9H2F3 369 aa11.78□□□□□ -0.52
CLK3-226ENST00000569406 PLCB1Q9NQ66 1216 aa11.78□□□□□ -0.52
CLK3-226ENST00000569406 ABLIM1O14639 778 aa11.78□□□□□ -0.52
CLK3-226ENST00000569406 UQCRFS1P1P0C7P4 283 aa11.78□□□□□ -0.52
CLK3-226ENST00000569406 KCNA2P16389 499 aa11.78□□□□□ -0.52
CLK3-226ENST00000569406 KLRK1P26718 216 aa11.78□□□□□ -0.52
CLK3-226ENST00000569406 ZNF268Q14587 947 aaPredicted RBP11.78□□□□□ -0.52
CLK3-226ENST00000569406 ADALQ6DHV7 355 aa11.78□□□□□ -0.52
CLK3-226ENST00000569406 DUS1LQ6P1R4 473 aaKnown RBP11.78□□□□□ -0.52
CLK3-226ENST00000569406 OLFM4Q6UX06 510 aa11.78□□□□□ -0.52
CLK3-226ENST00000569406 AENQ8WTP8 325 aaKnown RBP11.78□□□□□ -0.52
CLK3-226ENST00000569406 PHKBQ93100 1093 aa11.78□□□□□ -0.52
CLK3-226ENST00000569406 AIDAQ96BJ3 306 aa11.78□□□□□ -0.52
CLK3-226ENST00000569406 SEL1LQ9UBV2 794 aa11.78□□□□□ -0.52
CLK3-226ENST00000569406 MYH6P13533 1939 aa11.78□□□□□ -0.52
CLK3-226ENST00000569406 TARSL2A2RTX5 802 aaKnown RBP11.78□□□□□ -0.52
CLK3-226ENST00000569406 CFAP73A6NFT4 308 aa11.78□□□□□ -0.52
CLK3-226ENST00000569406 GHRP10912 638 aa11.78□□□□□ -0.52
CLK3-226ENST00000569406 RAD23BP54727 409 aa11.78□□□□□ -0.52
CLK3-226ENST00000569406 ERFEQ4G0M1 354 aa11.78□□□□□ -0.52
CLK3-226ENST00000569406 SPECC1LQ69YQ0 1117 aa11.78□□□□□ -0.52
CLK3-226ENST00000569406 KLHL10Q6JEL2 608 aa11.78□□□□□ -0.52
CLK3-226ENST00000569406 SLC17A8Q8NDX2 589 aa11.78□□□□□ -0.52
CLK3-226ENST00000569406 P3H4Q92791 437 aa11.78□□□□□ -0.52
CLK3-226ENST00000569406 RNF25Q96BH1 459 aaPredicted RBP11.78□□□□□ -0.52
CLK3-226ENST00000569406 GGT7Q9UJ14 662 aa11.78□□□□□ -0.52
CLK3-226ENST00000569406 NIP7Q9Y221 180 aaKnown RBP eCLIP11.78□□□□□ -0.52
CLK3-226ENST00000569406 LAMB1P07942 1786 aa11.77□□□□□ -0.52
CLK3-226ENST00000569406 NHSQ6T4R5 1651 aa11.77□□□□□ -0.52
CLK3-226ENST00000569406 SPATA31D3P0C874 917 aa11.77□□□□□ -0.52
CLK3-226ENST00000569406 NQO1P15559 274 aaKnown RBP11.77□□□□□ -0.52
CLK3-226ENST00000569406 IFI16Q16666 785 aaKnown RBP11.77□□□□□ -0.52
CLK3-226ENST00000569406 ZNF362Q5T0B9 420 aaPredicted RBP11.77□□□□□ -0.52
CLK3-226ENST00000569406 SPATA31D4Q6ZUB0 917 aa11.77□□□□□ -0.52
CLK3-226ENST00000569406 SLC7A5P1Q8MH63 180 aa11.77□□□□□ -0.52
CLK3-226ENST00000569406 ANKS4BQ8N8V4 417 aa11.77□□□□□ -0.52
CLK3-226ENST00000569406 AGBL1Q96MI9 1066 aa11.77□□□□□ -0.52
CLK3-226ENST00000569406 RIOK1Q9BRS2 568 aaKnown RBP11.77□□□□□ -0.52
CLK3-226ENST00000569406 ZMYND8Q9ULU4 1186 aaPredicted RBP11.77□□□□□ -0.52
CLK3-226ENST00000569406 A0A1W2PQ27 194 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms