RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 DGKHQ86XP1 1220 aa13.53□□□□□ -0.24
LDLR-205ENST00000557933 MAGOHBQ96A72 148 aaKnown RBP13.53□□□□□ -0.24
LDLR-205ENST00000557933 CYFIP2Q96F07 1278 aa13.53□□□□□ -0.24
LDLR-205ENST00000557933 INPP4AQ96PE3 977 aaPredicted RBP13.53□□□□□ -0.24
LDLR-205ENST00000557933 GDF3Q9NR23 364 aa13.53□□□□□ -0.24
LDLR-205ENST00000557933 DNM1LO00429 736 aa13.52□□□□□ -0.24
LDLR-205ENST00000557933 CDC25CP30307 473 aa13.52□□□□□ -0.24
LDLR-205ENST00000557933 CDK8P49336 464 aa13.52□□□□□ -0.24
LDLR-205ENST00000557933 ITGB3BPQ13352 177 aaPredicted RBP13.52□□□□□ -0.24
LDLR-205ENST00000557933 RPS6KA1Q15418 735 aa13.52□□□□□ -0.24
LDLR-205ENST00000557933 ZNF571Q7Z3V5 609 aaPredicted RBP13.52□□□□□ -0.24
LDLR-205ENST00000557933 CABS1Q96KC9 395 aa13.52□□□□□ -0.24
LDLR-205ENST00000557933 NLRP3Q96P20 1036 aa13.52□□□□□ -0.24
LDLR-205ENST00000557933 MYCBPQ99417 103 aaPredicted RBP13.52□□□□□ -0.24
LDLR-205ENST00000557933 CCDC113Q9H0I3 377 aa13.52□□□□□ -0.24
LDLR-205ENST00000557933 OSGEPQ9NPF4 335 aa13.52□□□□□ -0.24
LDLR-205ENST00000557933 RTCBQ9Y3I0 505 aaKnown RBP13.52□□□□□ -0.24
LDLR-205ENST00000557933 IFNAR2P48551 515 aa13.52□□□□□ -0.25
LDLR-205ENST00000557933 ADAM9Q13443 819 aa13.52□□□□□ -0.25
LDLR-205ENST00000557933 KRT71Q3SY84 523 aa13.52□□□□□ -0.25
LDLR-205ENST00000557933 GBP6Q6ZN66 633 aa13.52□□□□□ -0.25
LDLR-205ENST00000557933 KRT25Q7Z3Z0 450 aa13.52□□□□□ -0.25
LDLR-205ENST00000557933 USP38Q8NB14 1042 aa13.52□□□□□ -0.25
LDLR-205ENST00000557933 RAD54LQ92698 747 aa13.52□□□□□ -0.25
LDLR-205ENST00000557933 CAVIN3Q969G5 261 aa13.52□□□□□ -0.25
LDLR-205ENST00000557933 MLXIPLQ9NP71 852 aa13.52□□□□□ -0.25
LDLR-205ENST00000557933 ATP6V0A2Q9Y487 856 aa13.52□□□□□ -0.25
LDLR-205ENST00000557933 GCOM1H8Y6P7 765 aaPredicted RBP13.51□□□□□ -0.25
LDLR-205ENST00000557933 KRIT1O00522 736 aa13.51□□□□□ -0.25
LDLR-205ENST00000557933 MYZAPP0CAP1 466 aa13.51□□□□□ -0.25
LDLR-205ENST00000557933 ADCY1Q08828 1119 aa13.51□□□□□ -0.25
LDLR-205ENST00000557933 ZNF844Q08AG5 666 aa13.51□□□□□ -0.25
LDLR-205ENST00000557933 TBC1D10BQ4KMP7 808 aaPredicted RBP13.51□□□□□ -0.25
LDLR-205ENST00000557933 POTEAQ6S8J7 498 aa13.51□□□□□ -0.25
LDLR-205ENST00000557933 GLG1Q92896 1179 aa13.51□□□□□ -0.25
LDLR-205ENST00000557933 TSG101Q99816 390 aa13.51□□□□□ -0.25
LDLR-205ENST00000557933 DOCK2Q92608 1830 aa13.51□□□□□ -0.25
LDLR-205ENST00000557933 ECHS1P30084 290 aa13.51□□□□□ -0.25
LDLR-205ENST00000557933 HNRNPH3P31942 346 aaKnown RBP13.51□□□□□ -0.25
LDLR-205ENST00000557933 BTDP43251 543 aa13.51□□□□□ -0.25
LDLR-205ENST00000557933 CASP4P49662 377 aa13.51□□□□□ -0.25
LDLR-205ENST00000557933 PSMC6P62333 389 aa13.51□□□□□ -0.25
LDLR-205ENST00000557933 SKOR1P84550 965 aa13.51□□□□□ -0.25
LDLR-205ENST00000557933 KCNH2Q12809 1159 aa13.51□□□□□ -0.25
LDLR-205ENST00000557933 PABPC4Q13310 644 aaKnown RBP eCLIP13.51□□□□□ -0.25
LDLR-205ENST00000557933 NAB2Q15742 525 aa13.51□□□□□ -0.25
LDLR-205ENST00000557933 ASIC2Q16515 512 aa13.51□□□□□ -0.25
LDLR-205ENST00000557933 CCDC38Q502W7 563 aa13.51□□□□□ -0.25
LDLR-205ENST00000557933 GPBP1Q86WP2 473 aa13.51□□□□□ -0.25
LDLR-205ENST00000557933 METTL13Q8N6R0 699 aa13.51□□□□□ -0.25
LDLR-205ENST00000557933 ELMO3Q96BJ8 720 aa13.51□□□□□ -0.25
LDLR-205ENST00000557933 OSBPL7Q9BZF2 842 aa13.51□□□□□ -0.25
LDLR-205ENST00000557933 MTFR1LQ9H019 292 aa13.51□□□□□ -0.25
LDLR-205ENST00000557933 CXorf56Q9H5V9 222 aa13.51□□□□□ -0.25
LDLR-205ENST00000557933 DDX20Q9UHI6 824 aaKnown RBP13.51□□□□□ -0.25
LDLR-205ENST00000557933 RSPH10B2B2RC85 870 aa13.5□□□□□ -0.25
LDLR-205ENST00000557933 RSPH10BP0C881 870 aa13.5□□□□□ -0.25
LDLR-205ENST00000557933 NR2F2P24468 414 aa13.5□□□□□ -0.25
LDLR-205ENST00000557933 CDC37Q16543 378 aaPredicted RBP13.5□□□□□ -0.25
LDLR-205ENST00000557933 SLC18A3Q16572 532 aa13.5□□□□□ -0.25
LDLR-205ENST00000557933 FIGNQ5HY92 759 aa13.5□□□□□ -0.25
LDLR-205ENST00000557933 SLC10A5Q5PT55 438 aa13.5□□□□□ -0.25
LDLR-205ENST00000557933 MEI1Q5TIA1 1274 aa13.5□□□□□ -0.25
LDLR-205ENST00000557933 KDM7AQ6ZMT4 941 aa13.5□□□□□ -0.25
LDLR-205ENST00000557933 DAAM2Q86T65 1068 aa13.5□□□□□ -0.25
LDLR-205ENST00000557933 GUF1Q8N442 669 aaKnown RBP13.5□□□□□ -0.25
LDLR-205ENST00000557933 PRPF38AQ8NAV1 312 aaKnown RBP13.5□□□□□ -0.25
LDLR-205ENST00000557933 ANKS1AQ92625 1134 aa13.5□□□□□ -0.25
LDLR-205ENST00000557933 SELENOSQ9BQE4 189 aa13.5□□□□□ -0.25
LDLR-205ENST00000557933 SLC40A1Q9NP59 571 aa13.5□□□□□ -0.25
LDLR-205ENST00000557933 LRRC4BQ9NT99 713 aa13.5□□□□□ -0.25
LDLR-205ENST00000557933 NOC2LQ9Y3T9 749 aaKnown RBP13.5□□□□□ -0.25
LDLR-205ENST00000557933 PCDHB13Q9Y5F0 798 aa13.5□□□□□ -0.25
LDLR-205ENST00000557933 PPP1R12BO60237 982 aaPredicted RBP13.5□□□□□ -0.25
LDLR-205ENST00000557933 SHBGP04278 402 aa13.5□□□□□ -0.25
LDLR-205ENST00000557933 SERPING1P05155 500 aa13.5□□□□□ -0.25
LDLR-205ENST00000557933 GNA11P29992 359 aa13.5□□□□□ -0.25
LDLR-205ENST00000557933 FKBP3Q00688 224 aaKnown RBP13.5□□□□□ -0.25
LDLR-205ENST00000557933 ZNF662Q6ZS27 426 aa13.5□□□□□ -0.25
LDLR-205ENST00000557933 B4GALNT4Q76KP1 1039 aa13.5□□□□□ -0.25
LDLR-205ENST00000557933 TEX11Q8IYF3 940 aa13.5□□□□□ -0.25
LDLR-205ENST00000557933 CNPY4Q8N129 248 aa13.5□□□□□ -0.25
LDLR-205ENST00000557933 U2AF1L4Q8WU68 220 aaKnown RBP13.5□□□□□ -0.25
LDLR-205ENST00000557933 PNMA2Q9UL42 364 aa13.5□□□□□ -0.25
LDLR-205ENST00000557933 TMEM110-MUSTN1A8MSY1 372 aa13.5□□□□□ -0.25
LDLR-205ENST00000557933 MPHOSPH10O00566 681 aaKnown RBP13.5□□□□□ -0.25
LDLR-205ENST00000557933 GFPT2O94808 682 aa13.5□□□□□ -0.25
LDLR-205ENST00000557933 SCP2P22307 547 aa13.5□□□□□ -0.25
LDLR-205ENST00000557933 RFC4P35249 363 aa13.5□□□□□ -0.25
LDLR-205ENST00000557933 CDK17Q00537 523 aa13.5□□□□□ -0.25
LDLR-205ENST00000557933 IFFO1Q0D2I5 559 aa13.5□□□□□ -0.25
LDLR-205ENST00000557933 TMEM266Q2M3C6 531 aa13.5□□□□□ -0.25
LDLR-205ENST00000557933 CCDC121Q6ZUS5 278 aa13.5□□□□□ -0.25
LDLR-205ENST00000557933 RBM46Q8TBY0 533 aaKnown RBP13.5□□□□□ -0.25
LDLR-205ENST00000557933 AK8Q96MA6 479 aa13.5□□□□□ -0.25
LDLR-205ENST00000557933 NYXQ9GZU5 481 aa13.5□□□□□ -0.25
LDLR-205ENST00000557933 TAF1DQ9H5J8 278 aaPredicted RBP13.5□□□□□ -0.25
LDLR-205ENST00000557933 SH3GLB2Q9NR46 395 aa13.5□□□□□ -0.25
LDLR-205ENST00000557933 SKAP2O75563 359 aaPredicted RBP13.49□□□□□ -0.25
LDLR-205ENST00000557933 PLS1Q14651 629 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms