RNA–Protein interactions for RNA: ENST00000530304.5

PCF11-203, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 1 (best)

Gene PCF11, Length 2,649 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-203ENST00000530304 KRT12Q99456 494 aa21.37■■□□□ 1.01
PCF11-203ENST00000530304 FAM153AQ9UHL3 310 aa21.37■■□□□ 1.01
PCF11-203ENST00000530304 SLC9A1P19634 815 aa21.37■■□□□ 1.01
PCF11-203ENST00000530304 CORO7P57737 925 aa21.37■■□□□ 1.01
PCF11-203ENST00000530304 GIT2Q14161 759 aa21.37■■□□□ 1.01
PCF11-203ENST00000530304 IRF2BP2Q7Z5L9 587 aa21.37■■□□□ 1.01
PCF11-203ENST00000530304 SP8Q8IXZ3 490 aa21.37■■□□□ 1.01
PCF11-203ENST00000530304 EHD4Q9H223 541 aa21.37■■□□□ 1.01
PCF11-203ENST00000530304 LTBP4Q8N2S1 1624 aa21.36■■□□□ 1.01
PCF11-203ENST00000530304 MEIS2O14770 477 aa21.36■■□□□ 1.01
PCF11-203ENST00000530304 SPIRE1Q08AE8 756 aa21.36■■□□□ 1.01
PCF11-203ENST00000530304 NFIAQ12857 509 aa21.36■■□□□ 1.01
PCF11-203ENST00000530304 DPY19L2P1Q6NXN4 242 aa21.36■■□□□ 1.01
PCF11-203ENST00000530304 DNAJC5Q9H3Z4 198 aa21.36■■□□□ 1.01
PCF11-203ENST00000530304 LTBP1Q14766 1721 aa21.36■■□□□ 1.01
PCF11-203ENST00000530304 MEIS1O00470 390 aa21.36■■□□□ 1.01
PCF11-203ENST00000530304 PPEF1O14829 653 aaPredicted RBP21.36■■□□□ 1.01
PCF11-203ENST00000530304 MAGEA9P43362 315 aa21.36■■□□□ 1.01
PCF11-203ENST00000530304 PAK2Q13177 524 aa21.36■■□□□ 1.01
PCF11-203ENST00000530304 CDC37Q16543 378 aaPredicted RBP21.36■■□□□ 1.01
PCF11-203ENST00000530304 PRR16Q569H4 304 aa21.36■■□□□ 1.01
PCF11-203ENST00000530304 FRMD5Q7Z6J6 570 aa21.36■■□□□ 1.01
PCF11-203ENST00000530304 TRAF3IP3Q9Y228 551 aa21.36■■□□□ 1.01
PCF11-203ENST00000530304 GREB1LQ9C091 1923 aaPredicted RBP21.35■■□□□ 1.01
PCF11-203ENST00000530304 GNGT1P63211 74 aa21.35■■□□□ 1.01
PCF11-203ENST00000530304 PABPC4Q13310 644 aaKnown RBP eCLIP21.35■■□□□ 1.01
PCF11-203ENST00000530304 KNOP1Q1ED39 458 aaKnown RBP21.35■■□□□ 1.01
PCF11-203ENST00000530304 APOBEC3HQ6NTF7 200 aaKnown RBP21.35■■□□□ 1.01
PCF11-203ENST00000530304 ZNF571Q7Z3V5 609 aaPredicted RBP21.35■■□□□ 1.01
PCF11-203ENST00000530304 ZFPM1Q8IX07 1006 aa21.35■■□□□ 1.01
PCF11-203ENST00000530304 ETNPPLQ8TBG4 499 aa21.35■■□□□ 1.01
PCF11-203ENST00000530304 CCDC43Q96MW1 224 aaKnown RBP21.35■■□□□ 1.01
PCF11-203ENST00000530304 P2RX7Q99572 595 aaKnown RBP21.35■■□□□ 1.01
PCF11-203ENST00000530304 ZC3H12CQ9C0D7 883 aaKnown RBP21.35■■□□□ 1.01
PCF11-203ENST00000530304 ARMCX3Q9UH62 379 aaPredicted RBP21.35■■□□□ 1.01
PCF11-203ENST00000530304 USP21Q9UK80 565 aa21.35■■□□□ 1.01
PCF11-203ENST00000530304 KRT14P02533 472 aa21.35■■□□□ 1.01
PCF11-203ENST00000530304 UCHL3P15374 230 aa21.35■■□□□ 1.01
PCF11-203ENST00000530304 HOXD13P35453 343 aa21.35■■□□□ 1.01
PCF11-203ENST00000530304 DDR1Q08345 913 aa21.35■■□□□ 1.01
PCF11-203ENST00000530304 MOXD1Q6UVY6 613 aa21.35■■□□□ 1.01
PCF11-203ENST00000530304 IQCKQ8N0W5 287 aa21.35■■□□□ 1.01
PCF11-203ENST00000530304 CCDC17Q96LX7 622 aa21.35■■□□□ 1.01
PCF11-203ENST00000530304 SPAG5Q96R06 1193 aa21.35■■□□□ 1.01
PCF11-203ENST00000530304 PLCB1Q9NQ66 1216 aa21.35■■□□□ 1.01
PCF11-203ENST00000530304 DNM3Q9UQ16 869 aa21.35■■□□□ 1.01
PCF11-203ENST00000530304 GRIN2DO15399 1336 aa21.35■■□□□ 1.01
PCF11-203ENST00000530304 BTNL10A8MVZ5 291 aa21.34■■□□□ 1.01
PCF11-203ENST00000530304 EIF3HO15372 352 aaKnown RBP eCLIP21.34■■□□□ 1.01
PCF11-203ENST00000530304 AFPP02771 609 aaKnown RBP21.34■■□□□ 1.01
PCF11-203ENST00000530304 EEF2P13639 858 aaKnown RBP21.34■■□□□ 1.01
PCF11-203ENST00000530304 ARHGAP4P98171 946 aa21.34■■□□□ 1.01
PCF11-203ENST00000530304 SHROOM1Q2M3G4 852 aaPredicted RBP21.34■■□□□ 1.01
PCF11-203ENST00000530304 C10orf76Q5T2E6 689 aa21.34■■□□□ 1.01
PCF11-203ENST00000530304 TTC19Q6DKK2 380 aaPredicted RBP21.34■■□□□ 1.01
PCF11-203ENST00000530304 SYT2Q8N9I0 419 aaPredicted RBP21.34■■□□□ 1.01
PCF11-203ENST00000530304 USP38Q8NB14 1042 aa21.34■■□□□ 1.01
PCF11-203ENST00000530304 CASKIN2Q8WXE0 1202 aa21.34■■□□□ 1.01
PCF11-203ENST00000530304 CRYGNQ8WXF5 182 aa21.34■■□□□ 1.01
PCF11-203ENST00000530304 REEP2Q9BRK0 252 aa21.34■■□□□ 1.01
PCF11-203ENST00000530304 DNAJC18Q9H819 358 aa21.34■■□□□ 1.01
PCF11-203ENST00000530304 SPATA31C1P0DKV0 1188 aa21.34■■□□□ 1.01
PCF11-203ENST00000530304 CCT5P48643 541 aa21.34■■□□□ 1.01
PCF11-203ENST00000530304 DOK7Q18PE1 504 aa21.34■■□□□ 1.01
PCF11-203ENST00000530304 CFAP58Q5T655 872 aa21.34■■□□□ 1.01
PCF11-203ENST00000530304 SFR1Q86XK3 245 aa21.34■■□□□ 1.01
PCF11-203ENST00000530304 BCAS4Q8TDM0 211 aa21.34■■□□□ 1.01
PCF11-203ENST00000530304 THSD7AQ9UPZ6 1657 aa21.33■■□□□ 1.01
PCF11-203ENST00000530304 PON1P27169 355 aa21.33■■□□□ 1.01
PCF11-203ENST00000530304 RPA1P27694 616 aa21.33■■□□□ 1.01
PCF11-203ENST00000530304 GUCY2FP51841 1108 aa21.33■■□□□ 1.01
PCF11-203ENST00000530304 AP3B2Q13367 1082 aa21.33■■□□□ 1.01
PCF11-203ENST00000530304 TRADDQ15628 312 aa21.33■■□□□ 1.01
PCF11-203ENST00000530304 EXOC3L4Q17RC7 722 aa21.33■■□□□ 1.01
PCF11-203ENST00000530304 SLFN13Q68D06 897 aa21.33■■□□□ 1.01
PCF11-203ENST00000530304 KLRG2A4D1S0 409 aaPredicted RBP21.33■■□□□ 1
PCF11-203ENST00000530304 FAM196BA6NMK8 535 aa21.33■■□□□ 1
PCF11-203ENST00000530304 MYBP10242 640 aa21.33■■□□□ 1
PCF11-203ENST00000530304 SKOR1P84550 965 aa21.33■■□□□ 1
PCF11-203ENST00000530304 RPS6KA1Q15418 735 aa21.33■■□□□ 1
PCF11-203ENST00000530304 KCTD16Q68DU8 428 aa21.33■■□□□ 1
PCF11-203ENST00000530304 EPM2AIP1Q7L775 607 aaPredicted RBP21.33■■□□□ 1
PCF11-203ENST00000530304 ERMNQ8TAM6 284 aa21.33■■□□□ 1
PCF11-203ENST00000530304 TAF4BQ92750 862 aa21.33■■□□□ 1
PCF11-203ENST00000530304 TEKT1Q969V4 418 aa21.33■■□□□ 1
PCF11-203ENST00000530304 MKL1Q969V6 931 aa21.33■■□□□ 1
PCF11-203ENST00000530304 TMEM59LQ9UK28 342 aa21.33■■□□□ 1
PCF11-203ENST00000530304 BZW2Q9Y6E2 419 aaKnown RBP21.33■■□□□ 1
PCF11-203ENST00000530304 QSER1Q2KHR3 1735 aa21.33■■□□□ 1
PCF11-203ENST00000530304 ADAMTSL1Q8N6G6 1762 aa21.32■■□□□ 1
PCF11-203ENST00000530304 ZNF233A6NK53 670 aa21.32■■□□□ 1
PCF11-203ENST00000530304 KCNK3O14649 394 aa21.32■■□□□ 1
PCF11-203ENST00000530304 RAD51CO43502 376 aa21.32■■□□□ 1
PCF11-203ENST00000530304 XRCC5P13010 732 aaKnown RBP21.32■■□□□ 1
PCF11-203ENST00000530304 HHIPL2Q6UWX4 724 aa21.32■■□□□ 1
PCF11-203ENST00000530304 DNAAF5Q86Y56 855 aa21.32■■□□□ 1
PCF11-203ENST00000530304 RBM46Q8TBY0 533 aaKnown RBP21.32■■□□□ 1
PCF11-203ENST00000530304 DCAF4Q8WV16 495 aa21.32■■□□□ 1
PCF11-203ENST00000530304 RABEP2Q9H5N1 569 aa21.32■■□□□ 1
PCF11-203ENST00000530304 CALUO43852 315 aaPredicted RBP21.32■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms