RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 STAT5BP51692 787 aa13.05□□□□□ -0.32
VCAN-212ENST00000515397 ST3GAL1Q11201 340 aa13.05□□□□□ -0.32
VCAN-212ENST00000515397 PLCB4Q15147 1175 aa13.05□□□□□ -0.32
VCAN-212ENST00000515397 INF2Q27J81 1249 aa13.05□□□□□ -0.32
VCAN-212ENST00000515397 MARCH8Q5T0T0 291 aa13.05□□□□□ -0.32
VCAN-212ENST00000515397 FAM117BQ6P1L5 589 aa13.05□□□□□ -0.32
VCAN-212ENST00000515397 ABHD15Q6UXT9 468 aa13.05□□□□□ -0.32
VCAN-212ENST00000515397 NIPA1Q7RTP0 329 aa13.05□□□□□ -0.32
VCAN-212ENST00000515397 CCDC60Q8IWA6 550 aaPredicted RBP13.05□□□□□ -0.32
VCAN-212ENST00000515397 LENG9Q96B70 501 aa13.05□□□□□ -0.32
VCAN-212ENST00000515397 IL17RAQ96F46 866 aa13.05□□□□□ -0.32
VCAN-212ENST00000515397 KIF2CQ99661 725 aa13.05□□□□□ -0.32
VCAN-212ENST00000515397 MTIF3Q9H2K0 278 aaKnown RBP13.05□□□□□ -0.32
VCAN-212ENST00000515397 TRPC6Q9Y210 931 aa13.05□□□□□ -0.32
VCAN-212ENST00000515397 FAM205CA6NFA0 338 aa13.04□□□□□ -0.32
VCAN-212ENST00000515397 MSH4O15457 936 aa13.04□□□□□ -0.32
VCAN-212ENST00000515397 CHMP2AO43633 222 aa13.04□□□□□ -0.32
VCAN-212ENST00000515397 ATG7O95352 703 aa13.04□□□□□ -0.32
VCAN-212ENST00000515397 GNAT1P11488 350 aa13.04□□□□□ -0.32
VCAN-212ENST00000515397 ACTN1P12814 892 aa13.04□□□□□ -0.32
VCAN-212ENST00000515397 ATP4AP20648 1035 aa13.04□□□□□ -0.32
VCAN-212ENST00000515397 CIITAP33076 1130 aa13.04□□□□□ -0.32
VCAN-212ENST00000515397 DEFB103AP81534 67 aa13.04□□□□□ -0.32
VCAN-212ENST00000515397 RBL2Q08999 1139 aa13.04□□□□□ -0.32
VCAN-212ENST00000515397 TMEM62Q0P6H9 643 aa13.04□□□□□ -0.32
VCAN-212ENST00000515397 EARS2Q5JPH6 523 aaKnown RBP13.04□□□□□ -0.32
VCAN-212ENST00000515397 TEX2Q8IWB9 1127 aa13.04□□□□□ -0.32
VCAN-212ENST00000515397 NSUN7Q8NE18 718 aaKnown RBP13.04□□□□□ -0.32
VCAN-212ENST00000515397 DBF4BQ8NFT6 615 aa13.04□□□□□ -0.32
VCAN-212ENST00000515397 DNAJB3Q8WWF6 145 aa13.04□□□□□ -0.32
VCAN-212ENST00000515397 GTF3C6Q969F1 213 aa13.04□□□□□ -0.32
VCAN-212ENST00000515397 PHF20Q9BVI0 1012 aa13.04□□□□□ -0.32
VCAN-212ENST00000515397 FAM49AQ9H0Q0 323 aaPredicted RBP13.04□□□□□ -0.32
VCAN-212ENST00000515397 ZNF576Q9H609 170 aa13.04□□□□□ -0.32
VCAN-212ENST00000515397 CERS4Q9HA82 394 aa13.04□□□□□ -0.32
VCAN-212ENST00000515397 MSRAQ9UJ68 235 aa13.04□□□□□ -0.32
VCAN-212ENST00000515397 NRCAMQ92823 1304 aa13.04□□□□□ -0.32
VCAN-212ENST00000515397 POTEB3A0JP26 581 aa13.03□□□□□ -0.32
VCAN-212ENST00000515397 ARHGEF15O94989 841 aa13.03□□□□□ -0.32
VCAN-212ENST00000515397 CHRNA1P02708 482 aa13.03□□□□□ -0.32
VCAN-212ENST00000515397 CXCL10P02778 98 aa13.03□□□□□ -0.32
VCAN-212ENST00000515397 PFKMP08237 780 aa13.03□□□□□ -0.32
VCAN-212ENST00000515397 USP11P51784 963 aa13.03□□□□□ -0.32
VCAN-212ENST00000515397 GUCY1B3Q02153 619 aa13.03□□□□□ -0.32
VCAN-212ENST00000515397 NR5A1Q13285 461 aa13.03□□□□□ -0.32
VCAN-212ENST00000515397 LETM2Q2VYF4 491 aa13.03□□□□□ -0.32
VCAN-212ENST00000515397 MCTP2Q6DN12 878 aa13.03□□□□□ -0.32
VCAN-212ENST00000515397 PDXDC2PQ6P474 469 aa13.03□□□□□ -0.32
VCAN-212ENST00000515397 POTEBQ6S5H4 581 aa13.03□□□□□ -0.32
VCAN-212ENST00000515397 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.03□□□□□ -0.32
VCAN-212ENST00000515397 SPRED2Q7Z698 418 aa13.03□□□□□ -0.32
VCAN-212ENST00000515397 CCDC83Q8IWF9 413 aa13.03□□□□□ -0.32
VCAN-212ENST00000515397 C22orf23Q9BZE7 217 aa13.03□□□□□ -0.32
VCAN-212ENST00000515397 PRDM12Q9H4Q4 367 aa13.03□□□□□ -0.32
VCAN-212ENST00000515397 ZNF302Q9NR11 478 aa13.03□□□□□ -0.32
VCAN-212ENST00000515397 TUBE1Q9UJT0 475 aa13.03□□□□□ -0.32
VCAN-212ENST00000515397 SAMM50Q9Y512 469 aa13.03□□□□□ -0.32
VCAN-212ENST00000515397 COL6A3P12111 3177 aa13.03□□□□□ -0.32
VCAN-212ENST00000515397 CDH23Q9H251 3354 aa13.03□□□□□ -0.32
VCAN-212ENST00000515397 IGKV6D-21A0A0A0MT36 114 aa13.02□□□□□ -0.33
VCAN-212ENST00000515397 RFXAPO00287 272 aa13.02□□□□□ -0.33
VCAN-212ENST00000515397 WDR5P61964 334 aaKnown RBP13.02□□□□□ -0.33
VCAN-212ENST00000515397 NONOQ15233 471 aaKnown RBP eCLIP13.02□□□□□ -0.33
VCAN-212ENST00000515397 MIS18BP1Q6P0N0 1132 aa13.02□□□□□ -0.33
VCAN-212ENST00000515397 CNKSR3Q6P9H4 555 aa13.02□□□□□ -0.33
VCAN-212ENST00000515397 PIK3AP1Q6ZUJ8 805 aa13.02□□□□□ -0.33
VCAN-212ENST00000515397 PLPPR4Q7Z2D5 763 aa13.02□□□□□ -0.33
VCAN-212ENST00000515397 CKAP2LQ8IYA6 745 aa13.02□□□□□ -0.33
VCAN-212ENST00000515397 DAGLBQ8NCG7 672 aa13.02□□□□□ -0.33
VCAN-212ENST00000515397 UNC45AQ9H3U1 944 aa13.02□□□□□ -0.33
VCAN-212ENST00000515397 TBC1D22BQ9NU19 505 aa13.02□□□□□ -0.33
VCAN-212ENST00000515397 GABBR1Q9UBS5 961 aa13.02□□□□□ -0.33
VCAN-212ENST00000515397 STXBP5LQ9Y2K9 1186 aa13.02□□□□□ -0.33
VCAN-212ENST00000515397 EMSYQ7Z589 1322 aa13.02□□□□□ -0.33
VCAN-212ENST00000515397 CCDC194A0A1B0GVG4 234 aa13.01□□□□□ -0.33
VCAN-212ENST00000515397 SLC37A4O43826 429 aa13.01□□□□□ -0.33
VCAN-212ENST00000515397 EIF5BO60841 1220 aaKnown RBP13.01□□□□□ -0.33
VCAN-212ENST00000515397 GAS7O60861 476 aa13.01□□□□□ -0.33
VCAN-212ENST00000515397 CA3P07451 260 aa13.01□□□□□ -0.33
VCAN-212ENST00000515397 GHRP10912 638 aa13.01□□□□□ -0.33
VCAN-212ENST00000515397 KLRC1P26715 233 aa13.01□□□□□ -0.33
VCAN-212ENST00000515397 KCNJ6P48051 423 aa13.01□□□□□ -0.33
VCAN-212ENST00000515397 SETQ01105 290 aaPredicted RBP13.01□□□□□ -0.33
VCAN-212ENST00000515397 HERC6Q8IVU3 1022 aa13.01□□□□□ -0.33
VCAN-212ENST00000515397 PPP1R16BQ96T49 567 aa13.01□□□□□ -0.33
VCAN-212ENST00000515397 SLC28A3Q9HAS3 691 aa13.01□□□□□ -0.33
VCAN-212ENST00000515397 DDX25Q9UHL0 483 aaKnown RBP13.01□□□□□ -0.33
VCAN-212ENST00000515397 TCEAL9Q9UHQ7 104 aa13.01□□□□□ -0.33
VCAN-212ENST00000515397 LIMCH1Q9UPQ0 1083 aa13.01□□□□□ -0.33
VCAN-212ENST00000515397 STK36Q9NRP7 1315 aa13.01□□□□□ -0.33
VCAN-212ENST00000515397 CHD9Q3L8U1 2897 aa13□□□□□ -0.33
VCAN-212ENST00000515397 KAT6AQ92794 2004 aa13□□□□□ -0.33
VCAN-212ENST00000515397 LCHNA4D1U4 455 aa13□□□□□ -0.33
VCAN-212ENST00000515397 MBLAC1A4D2B0 266 aaPredicted RBP13□□□□□ -0.33
VCAN-212ENST00000515397 RRN3P2A6NIE6 340 aa13□□□□□ -0.33
VCAN-212ENST00000515397 BTBD18B2RXH4 712 aa13□□□□□ -0.33
VCAN-212ENST00000515397 ZNF862O60290 1169 aa13□□□□□ -0.33
VCAN-212ENST00000515397 CCNT1O60563 726 aaKnown RBP13□□□□□ -0.33
VCAN-212ENST00000515397 UPP2O95045 317 aa13□□□□□ -0.33
VCAN-212ENST00000515397 PSAPP07602 524 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms