RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 ZZZ3Q8IYH5 903 aa5.53□□□□□ -1.52
HMGB1P28-201ENST00000507778 CLRN3Q8NCR9 226 aa5.53□□□□□ -1.52
HMGB1P28-201ENST00000507778 FAM168AQ92567 244 aa5.53□□□□□ -1.52
HMGB1P28-201ENST00000507778 MTMR8Q96EF0 704 aa5.53□□□□□ -1.52
HMGB1P28-201ENST00000507778 TOE1Q96GM8 510 aaKnown RBP5.53□□□□□ -1.52
HMGB1P28-201ENST00000507778 CCDC8Q9H0W5 538 aaPredicted RBP5.53□□□□□ -1.52
HMGB1P28-201ENST00000507778 NOC2LQ9Y3T9 749 aaKnown RBP5.53□□□□□ -1.52
HMGB1P28-201ENST00000507778 FOXP2O15409 715 aa5.52□□□□□ -1.53
HMGB1P28-201ENST00000507778 JUNBP17275 347 aaPredicted RBP5.52□□□□□ -1.53
HMGB1P28-201ENST00000507778 ITGB5P18084 799 aa5.52□□□□□ -1.53
HMGB1P28-201ENST00000507778 CD40P25942 277 aa5.52□□□□□ -1.53
HMGB1P28-201ENST00000507778 PTX3P26022 381 aaPredicted RBP5.52□□□□□ -1.53
HMGB1P28-201ENST00000507778 VIPR1P32241 457 aa5.52□□□□□ -1.53
HMGB1P28-201ENST00000507778 FNTBP49356 437 aa5.52□□□□□ -1.53
HMGB1P28-201ENST00000507778 HERVK_113P62684 666 aa5.52□□□□□ -1.53
HMGB1P28-201ENST00000507778 LRRC32Q14392 662 aa5.52□□□□□ -1.53
HMGB1P28-201ENST00000507778 ODR4Q5SWX8 454 aa5.52□□□□□ -1.53
HMGB1P28-201ENST00000507778 CATSPEREQ5SY80 951 aa5.52□□□□□ -1.53
HMGB1P28-201ENST00000507778 ETV3LQ6ZN32 361 aa5.52□□□□□ -1.53
HMGB1P28-201ENST00000507778 ZNF605Q86T29 641 aa5.52□□□□□ -1.53
HMGB1P28-201ENST00000507778 RASSF3Q86WH2 238 aa5.52□□□□□ -1.53
HMGB1P28-201ENST00000507778 AMIGO3Q86WK7 504 aa5.52□□□□□ -1.53
HMGB1P28-201ENST00000507778 ZNF610Q8N9Z0 462 aa5.52□□□□□ -1.53
HMGB1P28-201ENST00000507778 DDX11Q96FC9 970 aa5.52□□□□□ -1.53
HMGB1P28-201ENST00000507778 LIN37Q96GY3 246 aaPredicted RBP5.52□□□□□ -1.53
HMGB1P28-201ENST00000507778 AHCYL2Q96HN2 611 aaKnown RBP5.52□□□□□ -1.53
HMGB1P28-201ENST00000507778 MENTQ9BUN1 341 aa5.52□□□□□ -1.53
HMGB1P28-201ENST00000507778 ASPSCR1Q9BZE9 553 aa5.52□□□□□ -1.53
HMGB1P28-201ENST00000507778 TRIM8Q9BZR9 551 aa5.52□□□□□ -1.53
HMGB1P28-201ENST00000507778 NGRNQ9NPE2 291 aaKnown RBP5.52□□□□□ -1.53
HMGB1P28-201ENST00000507778 DTLQ9NZJ0 730 aa5.52□□□□□ -1.53
HMGB1P28-201ENST00000507778 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP5.51□□□□□ -1.53
HMGB1P28-201ENST00000507778 ZNF503-AS2A6NEH8 195 aa5.51□□□□□ -1.53
HMGB1P28-201ENST00000507778 RASSF10A6NK89 507 aa5.51□□□□□ -1.53
HMGB1P28-201ENST00000507778 IQCJ-SCHIP1C9J366 451 aaPredicted RBP5.51□□□□□ -1.53
HMGB1P28-201ENST00000507778 K7ESF4 209 aa5.51□□□□□ -1.53
HMGB1P28-201ENST00000507778 LRG1P02750 347 aa5.51□□□□□ -1.53
HMGB1P28-201ENST00000507778 IRAK1P51617 712 aa5.51□□□□□ -1.53
HMGB1P28-201ENST00000507778 SRSF3P84103 164 aaKnown RBP5.51□□□□□ -1.53
HMGB1P28-201ENST00000507778 ZNF200P98182 395 aaPredicted RBP5.51□□□□□ -1.53
HMGB1P28-201ENST00000507778 EPHA7Q15375 998 aa5.51□□□□□ -1.53
HMGB1P28-201ENST00000507778 RGL3Q3MIN7 710 aa5.51□□□□□ -1.53
HMGB1P28-201ENST00000507778 SYDE2Q5VT97 1194 aa5.51□□□□□ -1.53
HMGB1P28-201ENST00000507778 ZC3H18Q86VM9 953 aaKnown RBP5.51□□□□□ -1.53
HMGB1P28-201ENST00000507778 NME9Q86XW9 330 aa5.51□□□□□ -1.53
HMGB1P28-201ENST00000507778 ZDHHC5Q9C0B5 715 aa5.51□□□□□ -1.53
HMGB1P28-201ENST00000507778 ZMAT4Q9H898 229 aa5.51□□□□□ -1.53
HMGB1P28-201ENST00000507778 VTA1Q9NP79 307 aa5.51□□□□□ -1.53
HMGB1P28-201ENST00000507778 SIRT5Q9NXA8 310 aa5.51□□□□□ -1.53
HMGB1P28-201ENST00000507778 HSPBP1Q9NZL4 362 aa5.51□□□□□ -1.53
HMGB1P28-201ENST00000507778 KLHL42Q9P2K6 505 aa5.51□□□□□ -1.53
HMGB1P28-201ENST00000507778 TRHDEQ9UKU6 1024 aa5.51□□□□□ -1.53
HMGB1P28-201ENST00000507778 ALDH1L1O75891 902 aa5.5□□□□□ -1.53
HMGB1P28-201ENST00000507778 ASGR2P07307 311 aa5.5□□□□□ -1.53
HMGB1P28-201ENST00000507778 MMEP08473 750 aa5.5□□□□□ -1.53
HMGB1P28-201ENST00000507778 NCAM1P13591 858 aa5.5□□□□□ -1.53
HMGB1P28-201ENST00000507778 STAT5AP42229 794 aa5.5□□□□□ -1.53
HMGB1P28-201ENST00000507778 NKX3-2P78367 333 aa5.5□□□□□ -1.53
HMGB1P28-201ENST00000507778 ADCY1Q08828 1119 aa5.5□□□□□ -1.53
HMGB1P28-201ENST00000507778 DBPQ10586 325 aaPredicted RBP5.5□□□□□ -1.53
HMGB1P28-201ENST00000507778 ESRP1Q6NXG1 681 aaKnown RBP5.5□□□□□ -1.53
HMGB1P28-201ENST00000507778 TEPPQ6URK8 271 aa5.5□□□□□ -1.53
HMGB1P28-201ENST00000507778 CD300LDQ6UXZ3 194 aa5.5□□□□□ -1.53
HMGB1P28-201ENST00000507778 FRMD7Q6ZUT3 714 aa5.5□□□□□ -1.53
HMGB1P28-201ENST00000507778 HIPK4Q8NE63 616 aa5.5□□□□□ -1.53
HMGB1P28-201ENST00000507778 ASB15Q8WXK1 588 aa5.5□□□□□ -1.53
HMGB1P28-201ENST00000507778 CPA5Q8WXQ8 436 aa5.5□□□□□ -1.53
HMGB1P28-201ENST00000507778 C16orf92Q96LL3 132 aa5.5□□□□□ -1.53
HMGB1P28-201ENST00000507778 GBP4Q96PP9 640 aa5.5□□□□□ -1.53
HMGB1P28-201ENST00000507778 FAM53CQ9NYF3 392 aa5.5□□□□□ -1.53
HMGB1P28-201ENST00000507778 G3BP2Q9UN86 482 aaKnown RBP5.5□□□□□ -1.53
HMGB1P28-201ENST00000507778 SPEF1Q9Y4P9 236 aa5.5□□□□□ -1.53
HMGB1P28-201ENST00000507778 ASB1Q9Y576 335 aa5.5□□□□□ -1.53
HMGB1P28-201ENST00000507778 CARMIL2Q6F5E8 1435 aa5.49□□□□□ -1.53
HMGB1P28-201ENST00000507778 PEX10O60683 326 aa5.49□□□□□ -1.53
HMGB1P28-201ENST00000507778 ENO2P09104 434 aaPredicted RBP5.49□□□□□ -1.53
HMGB1P28-201ENST00000507778 TARBP2Q15633 366 aaKnown RBP5.49□□□□□ -1.53
HMGB1P28-201ENST00000507778 CR1LQ2VPA4 569 aa5.49□□□□□ -1.53
HMGB1P28-201ENST00000507778 LDHDQ86WU2 507 aa5.49□□□□□ -1.53
HMGB1P28-201ENST00000507778 JDP2Q8WYK2 163 aa5.49□□□□□ -1.53
HMGB1P28-201ENST00000507778 RTF1Q92541 710 aaKnown RBP5.49□□□□□ -1.53
HMGB1P28-201ENST00000507778 ERCC4Q92889 916 aaPredicted RBP5.49□□□□□ -1.53
HMGB1P28-201ENST00000507778 E2F7Q96AV8 911 aa5.49□□□□□ -1.53
HMGB1P28-201ENST00000507778 DIRC2Q96SL1 478 aa5.49□□□□□ -1.53
HMGB1P28-201ENST00000507778 SMAD5Q99717 465 aaKnown RBP5.49□□□□□ -1.53
HMGB1P28-201ENST00000507778 RNF38Q9H0F5 515 aa5.49□□□□□ -1.53
HMGB1P28-201ENST00000507778 EPB41L4BQ9H329 900 aa5.49□□□□□ -1.53
HMGB1P28-201ENST00000507778 NSUN3Q9H649 340 aaKnown RBP5.49□□□□□ -1.53
HMGB1P28-201ENST00000507778 DCP1AQ9NPI6 582 aaPredicted RBP5.49□□□□□ -1.53
HMGB1P28-201ENST00000507778 TOPORSQ9NS56 1045 aaPredicted RBP5.49□□□□□ -1.53
HMGB1P28-201ENST00000507778 C14orf119Q9NWQ9 140 aa5.49□□□□□ -1.53
HMGB1P28-201ENST00000507778 USP36Q9P275 1121 aaKnown RBP5.49□□□□□ -1.53
HMGB1P28-201ENST00000507778 ARHGAP28Q9P2N2 729 aa5.49□□□□□ -1.53
HMGB1P28-201ENST00000507778 KCNG1Q9UIX4 513 aa5.49□□□□□ -1.53
HMGB1P28-201ENST00000507778 PLA2G2DQ9UNK4 145 aa5.49□□□□□ -1.53
HMGB1P28-201ENST00000507778 WASHC2AQ641Q2 1341 aa5.48□□□□□ -1.53
HMGB1P28-201ENST00000507778 PRAMEF22A3QJZ6 481 aa5.48□□□□□ -1.53
HMGB1P28-201ENST00000507778 GOLGA8AA7E2F4 631 aa5.48□□□□□ -1.53
HMGB1P28-201ENST00000507778 GOLGA8BA8MQT2 603 aa5.48□□□□□ -1.53
HMGB1P28-201ENST00000507778 GOLGA6L22H0YM25 854 aa5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms