RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 TTLL4Q14679 1199 aa14.15□□□□□ -0.14
COL6A3-212ENST00000491769 PPP6R3Q5H9R7 873 aaPredicted RBP14.15□□□□□ -0.14
COL6A3-212ENST00000491769 APOBEC3FQ8IUX4 373 aaKnown RBP14.15□□□□□ -0.14
COL6A3-212ENST00000491769 LCORLQ8N3X6 602 aa14.15□□□□□ -0.14
COL6A3-212ENST00000491769 TUBGCP2Q9BSJ2 902 aa14.15□□□□□ -0.14
COL6A3-212ENST00000491769 TEKT2Q9UIF3 430 aa14.15□□□□□ -0.14
COL6A3-212ENST00000491769 MXI1P50539 228 aa14.14□□□□□ -0.15
COL6A3-212ENST00000491769 VEPH1Q14D04 833 aa14.14□□□□□ -0.15
COL6A3-212ENST00000491769 WHAMMP3Q1A5X7 153 aa14.14□□□□□ -0.15
COL6A3-212ENST00000491769 ERICH1Q86X53 443 aa14.14□□□□□ -0.15
COL6A3-212ENST00000491769 GIMAP8Q8ND71 665 aaPredicted RBP14.14□□□□□ -0.15
COL6A3-212ENST00000491769 FBXO40Q9UH90 709 aa14.14□□□□□ -0.15
COL6A3-212ENST00000491769 AFF2P51816 1311 aa14.14□□□□□ -0.15
COL6A3-212ENST00000491769 APOEP02649 317 aa14.14□□□□□ -0.15
COL6A3-212ENST00000491769 HSPA8P11142 646 aaKnown RBP14.14□□□□□ -0.15
COL6A3-212ENST00000491769 COPB1P53618 953 aaKnown RBP14.14□□□□□ -0.15
COL6A3-212ENST00000491769 TNFAIP2Q03169 654 aa14.14□□□□□ -0.15
COL6A3-212ENST00000491769 SLMAPQ14BN4 828 aa14.14□□□□□ -0.15
COL6A3-212ENST00000491769 SLFN12LQ6IEE8 588 aa14.14□□□□□ -0.15
COL6A3-212ENST00000491769 TMTC3Q6ZXV5 915 aa14.14□□□□□ -0.15
COL6A3-212ENST00000491769 PSMA2P25787 234 aa14.14□□□□□ -0.15
COL6A3-212ENST00000491769 GNGT1P63211 74 aa14.14□□□□□ -0.15
COL6A3-212ENST00000491769 PPP1R2P3Q6NXS1 205 aa14.14□□□□□ -0.15
COL6A3-212ENST00000491769 BEST2Q8NFU1 509 aa14.14□□□□□ -0.15
COL6A3-212ENST00000491769 TMEM2Q9UHN6 1383 aa14.14□□□□□ -0.15
COL6A3-212ENST00000491769 IQCA1LA6NCM1 817 aa14.14□□□□□ -0.15
COL6A3-212ENST00000491769 OAS2P29728 719 aaKnown RBP14.14□□□□□ -0.15
COL6A3-212ENST00000491769 PDCD2Q16342 344 aaPredicted RBP14.14□□□□□ -0.15
COL6A3-212ENST00000491769 KIF19Q2TAC6 998 aa14.14□□□□□ -0.15
COL6A3-212ENST00000491769 ANKRD20A4Q4UJ75 823 aa14.14□□□□□ -0.15
COL6A3-212ENST00000491769 ANKRD20A8PQ5CZ79 823 aa14.14□□□□□ -0.15
COL6A3-212ENST00000491769 ANKRD20A2Q5SQ80 823 aa14.14□□□□□ -0.15
COL6A3-212ENST00000491769 ANKRD20A1Q5TYW2 823 aa14.14□□□□□ -0.15
COL6A3-212ENST00000491769 FOXP4Q8IVH2 680 aaPredicted RBP14.14□□□□□ -0.15
COL6A3-212ENST00000491769 TDRD3Q9H7E2 651 aaKnown RBP14.14□□□□□ -0.15
COL6A3-212ENST00000491769 CPSF2Q9P2I0 782 aaKnown RBP14.14□□□□□ -0.15
COL6A3-212ENST00000491769 EFCAB8A8MWE9 144 aa14.14□□□□□ -0.15
COL6A3-212ENST00000491769 KIF28PB7ZC32 967 aa14.14□□□□□ -0.15
COL6A3-212ENST00000491769 UPP2O95045 317 aa14.14□□□□□ -0.15
COL6A3-212ENST00000491769 LTKP29376 864 aa14.14□□□□□ -0.15
COL6A3-212ENST00000491769 OCRLQ01968 901 aa14.14□□□□□ -0.15
COL6A3-212ENST00000491769 MECOMQ03112 1051 aa14.14□□□□□ -0.15
COL6A3-212ENST00000491769 MTMR1Q13613 665 aa14.14□□□□□ -0.15
COL6A3-212ENST00000491769 ZNF568Q3ZCX4 644 aa14.14□□□□□ -0.15
COL6A3-212ENST00000491769 RHPN2Q8IUC4 686 aa14.14□□□□□ -0.15
COL6A3-212ENST00000491769 ATP6V0A4Q9HBG4 840 aa14.14□□□□□ -0.15
COL6A3-212ENST00000491769 USP17L5A8MUK1 530 aa14.13□□□□□ -0.15
COL6A3-212ENST00000491769 HSPA6P17066 643 aa14.13□□□□□ -0.15
COL6A3-212ENST00000491769 CAPRIN1Q14444 709 aaKnown RBP14.13□□□□□ -0.15
COL6A3-212ENST00000491769 LCA5Q86VQ0 697 aa14.13□□□□□ -0.15
COL6A3-212ENST00000491769 NCLNQ969V3 563 aa14.13□□□□□ -0.15
COL6A3-212ENST00000491769 CCDC138Q96M89 665 aa14.13□□□□□ -0.15
COL6A3-212ENST00000491769 RMDN3Q96TC7 470 aa14.13□□□□□ -0.15
COL6A3-212ENST00000491769 ERBB4Q15303 1308 aa14.13□□□□□ -0.15
COL6A3-212ENST00000491769 CDK8P49336 464 aa14.13□□□□□ -0.15
COL6A3-212ENST00000491769 IL9RQ01113 521 aa14.13□□□□□ -0.15
COL6A3-212ENST00000491769 GUCY2DQ02846 1103 aa14.13□□□□□ -0.15
COL6A3-212ENST00000491769 GLE1Q53GS7 698 aaKnown RBP14.13□□□□□ -0.15
COL6A3-212ENST00000491769 SPATA1Q5VX52 437 aa14.13□□□□□ -0.15
COL6A3-212ENST00000491769 FAM133AQ8N9E0 248 aa14.13□□□□□ -0.15
COL6A3-212ENST00000491769 CYP2D7A0A087X1C5 515 aa14.13□□□□□ -0.15
COL6A3-212ENST00000491769 MOCS2O96007 188 aaPredicted RBP14.13□□□□□ -0.15
COL6A3-212ENST00000491769 CYP27A1Q02318 531 aa14.13□□□□□ -0.15
COL6A3-212ENST00000491769 FAM117BQ6P1L5 589 aa14.13□□□□□ -0.15
COL6A3-212ENST00000491769 FANCLQ9NW38 375 aa14.13□□□□□ -0.15
COL6A3-212ENST00000491769 SFI1A8K8P3 1242 aa14.13□□□□□ -0.15
COL6A3-212ENST00000491769 CREB3O43889 395 aa14.13□□□□□ -0.15
COL6A3-212ENST00000491769 PLA2G4BP0C869 781 aa14.13□□□□□ -0.15
COL6A3-212ENST00000491769 FCER1AP12319 257 aa14.13□□□□□ -0.15
COL6A3-212ENST00000491769 VCPP55072 806 aaKnown RBP14.13□□□□□ -0.15
COL6A3-212ENST00000491769 IMPG1Q17R60 797 aa14.13□□□□□ -0.15
COL6A3-212ENST00000491769 TCP11X2Q5H9J9 407 aa14.13□□□□□ -0.15
COL6A3-212ENST00000491769 FAM167AQ96KS9 214 aa14.13□□□□□ -0.15
COL6A3-212ENST00000491769 ZBTB18Q99592 522 aa14.13□□□□□ -0.15
COL6A3-212ENST00000491769 RASSF4Q9H2L5 321 aa14.13□□□□□ -0.15
COL6A3-212ENST00000491769 PRPF4O43172 522 aaKnown RBP eCLIP14.13□□□□□ -0.15
COL6A3-212ENST00000491769 THEMIS2Q5TEJ8 643 aa14.13□□□□□ -0.15
COL6A3-212ENST00000491769 TMEM179Q6ZVK1 233 aa14.13□□□□□ -0.15
COL6A3-212ENST00000491769 DONSONQ9NYP3 566 aa14.13□□□□□ -0.15
COL6A3-212ENST00000491769 hCG_1984214I3L0E3 225 aa14.12□□□□□ -0.15
COL6A3-212ENST00000491769 CIAO1O76071 339 aa14.12□□□□□ -0.15
COL6A3-212ENST00000491769 ANP32DO95626 131 aa14.12□□□□□ -0.15
COL6A3-212ENST00000491769 ECEL1O95672 775 aa14.12□□□□□ -0.15
COL6A3-212ENST00000491769 TCP1P17987 556 aaKnown RBP14.12□□□□□ -0.15
COL6A3-212ENST00000491769 PAPOLAP51003 745 aaKnown RBP14.12□□□□□ -0.15
COL6A3-212ENST00000491769 JAK3P52333 1124 aa14.12□□□□□ -0.15
COL6A3-212ENST00000491769 LBRQ14739 615 aaKnown RBP14.12□□□□□ -0.15
COL6A3-212ENST00000491769 ZNF713Q8N859 430 aaPredicted RBP14.12□□□□□ -0.15
COL6A3-212ENST00000491769 CUEDC2Q9H467 287 aa14.12□□□□□ -0.15
COL6A3-212ENST00000491769 KLHL8Q9P2G9 620 aaPredicted RBP14.12□□□□□ -0.15
COL6A3-212ENST00000491769 TMCC1O94876 653 aa14.12□□□□□ -0.15
COL6A3-212ENST00000491769 NCF2P19878 526 aaPredicted RBP14.12□□□□□ -0.15
COL6A3-212ENST00000491769 CACNB2Q08289 660 aaPredicted RBP14.12□□□□□ -0.15
COL6A3-212ENST00000491769 AK8Q96MA6 479 aa14.12□□□□□ -0.15
COL6A3-212ENST00000491769 EN1Q05925 392 aaPredicted RBP14.12□□□□□ -0.15
COL6A3-212ENST00000491769 TRMT10CQ7L0Y3 403 aaKnown RBP14.12□□□□□ -0.15
COL6A3-212ENST00000491769 ZNF212Q9UDV6 495 aa14.12□□□□□ -0.15
COL6A3-212ENST00000491769 PNMA6FA0A0J9YX94 578 aa14.12□□□□□ -0.15
COL6A3-212ENST00000491769 MOCS3O95396 460 aa14.12□□□□□ -0.15
COL6A3-212ENST00000491769 ASMTLO95671 621 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms