RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 CATSPERZQ9NTU4 200 aa5.05□□□□□ -1.6
VPS50-216ENST00000484954 NDOR1Q9UHB4 597 aa5.05□□□□□ -1.6
VPS50-216ENST00000484954 ZFP69BQ9UJL9 534 aa5.05□□□□□ -1.6
VPS50-216ENST00000484954 SRPK3Q9UPE1 567 aa5.05□□□□□ -1.6
VPS50-216ENST00000484954 ZNF839A8K0R7 811 aa5.04□□□□□ -1.6
VPS50-216ENST00000484954 KLHL18O94889 574 aa5.04□□□□□ -1.6
VPS50-216ENST00000484954 IL18BPO95998 194 aa5.04□□□□□ -1.6
VPS50-216ENST00000484954 CYP1A1P04798 512 aaPredicted RBP5.04□□□□□ -1.6
VPS50-216ENST00000484954 GABREP78334 506 aa5.04□□□□□ -1.6
VPS50-216ENST00000484954 SEC23AQ15436 765 aa5.04□□□□□ -1.6
VPS50-216ENST00000484954 LONRF2Q1L5Z9 754 aa5.04□□□□□ -1.6
VPS50-216ENST00000484954 DPH6Q7L8W6 267 aa5.04□□□□□ -1.6
VPS50-216ENST00000484954 STPG3Q8N7X2 389 aa5.04□□□□□ -1.6
VPS50-216ENST00000484954 JMYQ8N9B5 988 aa5.04□□□□□ -1.6
VPS50-216ENST00000484954 FBXW5Q969U6 566 aa5.04□□□□□ -1.6
VPS50-216ENST00000484954 IPO9Q96P70 1041 aaKnown RBP5.04□□□□□ -1.6
VPS50-216ENST00000484954 C1QTNF3Q9BXJ4 246 aa5.04□□□□□ -1.6
VPS50-216ENST00000484954 TMEM168Q9H0V1 697 aa5.04□□□□□ -1.6
VPS50-216ENST00000484954 SMURF1Q9HCE7 757 aa5.04□□□□□ -1.6
VPS50-216ENST00000484954 SLC39A2Q9NP94 309 aa5.04□□□□□ -1.6
VPS50-216ENST00000484954 CCDC66A2RUB6 948 aa5.03□□□□□ -1.6
VPS50-216ENST00000484954 C9orf118A6NHY6 69 aa5.03□□□□□ -1.6
VPS50-216ENST00000484954 ZNF561-AS1K7EIQ3 104 aa5.03□□□□□ -1.6
VPS50-216ENST00000484954 CYR61O00622 381 aa5.03□□□□□ -1.6
VPS50-216ENST00000484954 KNG1P01042 644 aa5.03□□□□□ -1.6
VPS50-216ENST00000484954 PTPN1P18031 435 aaKnown RBP5.03□□□□□ -1.6
VPS50-216ENST00000484954 ACVRL1P37023 503 aa5.03□□□□□ -1.6
VPS50-216ENST00000484954 DNM2P50570 870 aa5.03□□□□□ -1.6
VPS50-216ENST00000484954 KIAA2012Q0VF49 1180 aa5.03□□□□□ -1.6
VPS50-216ENST00000484954 GPR19Q15760 415 aa5.03□□□□□ -1.6
VPS50-216ENST00000484954 TM4SF20Q53R12 229 aa5.03□□□□□ -1.6
VPS50-216ENST00000484954 BTBD8Q5XKL5 378 aa5.03□□□□□ -1.6
VPS50-216ENST00000484954 LIMS2Q7Z4I7 341 aa5.03□□□□□ -1.6
VPS50-216ENST00000484954 FGD2Q7Z6J4 655 aa5.03□□□□□ -1.6
VPS50-216ENST00000484954 LGI4Q8N135 537 aa5.03□□□□□ -1.6
VPS50-216ENST00000484954 CISD2Q8N5K1 135 aaKnown RBP5.03□□□□□ -1.6
VPS50-216ENST00000484954 GSTCDQ8NEC7 633 aa5.03□□□□□ -1.6
VPS50-216ENST00000484954 IGDCC4Q8TDY8 1250 aa5.03□□□□□ -1.6
VPS50-216ENST00000484954 SAMD11Q96NU1 681 aa5.03□□□□□ -1.6
VPS50-216ENST00000484954 PTPN18Q99952 460 aa5.03□□□□□ -1.6
VPS50-216ENST00000484954 TACO1Q9BSH4 297 aaKnown RBP5.03□□□□□ -1.6
VPS50-216ENST00000484954 SSBP3Q9BWW4 388 aaPredicted RBP5.03□□□□□ -1.6
VPS50-216ENST00000484954 KCND1Q9NSA2 647 aa5.03□□□□□ -1.6
VPS50-216ENST00000484954 ST6GALNAC2Q9UJ37 374 aa5.03□□□□□ -1.6
VPS50-216ENST00000484954 COQ6Q9Y2Z9 468 aa5.03□□□□□ -1.6
VPS50-216ENST00000484954 PTCH2Q9Y6C5 1203 aa5.03□□□□□ -1.6
VPS50-216ENST00000484954 PLATP00750 562 aa5.02□□□□□ -1.61
VPS50-216ENST00000484954 DBPQ10586 325 aaPredicted RBP5.02□□□□□ -1.61
VPS50-216ENST00000484954 BMS1Q14692 1282 aaKnown RBP5.02□□□□□ -1.61
VPS50-216ENST00000484954 SF3A1Q15459 793 aaKnown RBP5.02□□□□□ -1.61
VPS50-216ENST00000484954 PKN3Q6P5Z2 889 aa5.02□□□□□ -1.61
VPS50-216ENST00000484954 ABHD17CQ6PCB6 329 aa5.02□□□□□ -1.61
VPS50-216ENST00000484954 C16orf59Q7L2K0 433 aa5.02□□□□□ -1.61
VPS50-216ENST00000484954 ZC3H7AQ8IWR0 971 aaKnown RBP5.02□□□□□ -1.61
VPS50-216ENST00000484954 SREK1Q8WXA9 508 aaKnown RBP5.02□□□□□ -1.61
VPS50-216ENST00000484954 MKL1Q969V6 931 aa5.02□□□□□ -1.61
VPS50-216ENST00000484954 WRNIP1Q96S55 665 aa5.02□□□□□ -1.61
VPS50-216ENST00000484954 KANSL2Q9H9L4 492 aa5.02□□□□□ -1.61
VPS50-216ENST00000484954 RIC8BQ9NVN3 520 aa5.02□□□□□ -1.61
VPS50-216ENST00000484954 ARHGAP20Q9P2F6 1191 aa5.02□□□□□ -1.61
VPS50-216ENST00000484954 FTSJ1Q9UET6 329 aa5.02□□□□□ -1.61
VPS50-216ENST00000484954 C4BPAP04003 597 aaKnown RBP5.01□□□□□ -1.61
VPS50-216ENST00000484954 ENO2P09104 434 aaPredicted RBP5.01□□□□□ -1.61
VPS50-216ENST00000484954 MC4RP32245 332 aa5.01□□□□□ -1.61
VPS50-216ENST00000484954 NFATC3Q12968 1075 aa5.01□□□□□ -1.61
VPS50-216ENST00000484954 SMAD2Q15796 467 aaKnown RBP5.01□□□□□ -1.61
VPS50-216ENST00000484954 C2orf27AQ580R0 203 aa5.01□□□□□ -1.61
VPS50-216ENST00000484954 TRIM61Q5EBN2 209 aa5.01□□□□□ -1.61
VPS50-216ENST00000484954 FIGNQ5HY92 759 aa5.01□□□□□ -1.61
VPS50-216ENST00000484954 BORAQ6PGQ7 559 aa5.01□□□□□ -1.61
VPS50-216ENST00000484954 GPR155Q7Z3F1 870 aa5.01□□□□□ -1.61
VPS50-216ENST00000484954 BRAPQ7Z569 592 aa5.01□□□□□ -1.61
VPS50-216ENST00000484954 KBTBD2Q8IY47 623 aa5.01□□□□□ -1.61
VPS50-216ENST00000484954 TTC9BQ8N6N2 239 aa5.01□□□□□ -1.61
VPS50-216ENST00000484954 THAP3Q8WTV1 239 aaPredicted RBP5.01□□□□□ -1.61
VPS50-216ENST00000484954 DVL3Q92997 716 aaPredicted RBP5.01□□□□□ -1.61
VPS50-216ENST00000484954 OSBPL2Q9H1P3 480 aa5.01□□□□□ -1.61
VPS50-216ENST00000484954 PPP4R1LQ9P1A2 415 aa5.01□□□□□ -1.61
VPS50-216ENST00000484954 CDK11AQ9UQ88 783 aaPredicted RBP5.01□□□□□ -1.61
VPS50-216ENST00000484954 PTPN22Q9Y2R2 807 aa5.01□□□□□ -1.61
VPS50-216ENST00000484954 ZDHHC9Q9Y397 364 aa5.01□□□□□ -1.61
VPS50-216ENST00000484954 NUB1Q9Y5A7 615 aa5.01□□□□□ -1.61
VPS50-216ENST00000484954 ATP23Q9Y6H3 246 aa5.01□□□□□ -1.61
VPS50-216ENST00000484954 CYP7B1O75881 506 aa5□□□□□ -1.61
VPS50-216ENST00000484954 KCNA6P17658 529 aa5□□□□□ -1.61
VPS50-216ENST00000484954 TGM1P22735 817 aa5□□□□□ -1.61
VPS50-216ENST00000484954 ST5P78524 1137 aa5□□□□□ -1.61
VPS50-216ENST00000484954 LACTBP83111 547 aaPredicted RBP5□□□□□ -1.61
VPS50-216ENST00000484954 SQSTM1Q13501 440 aa5□□□□□ -1.61
VPS50-216ENST00000484954 CRY1Q16526 586 aa5□□□□□ -1.61
VPS50-216ENST00000484954 CRIP3Q6Q6R5 217 aa5□□□□□ -1.61
VPS50-216ENST00000484954 FAM124AQ86V42 546 aa5□□□□□ -1.61
VPS50-216ENST00000484954 NOSTRINQ8IVI9 506 aa5□□□□□ -1.61
VPS50-216ENST00000484954 KLHL36Q8N4N3 616 aa5□□□□□ -1.61
VPS50-216ENST00000484954 ZSWIM2Q8NEG5 633 aa5□□□□□ -1.61
VPS50-216ENST00000484954 TRIM39Q9HCM9 518 aa5□□□□□ -1.61
VPS50-216ENST00000484954 SFMBT1Q9UHJ3 866 aa5□□□□□ -1.61
VPS50-216ENST00000484954 ADAM29Q9UKF5 820 aa5□□□□□ -1.61
VPS50-216ENST00000484954 ZNF536O15090 1300 aa4.99□□□□□ -1.61
VPS50-216ENST00000484954 TCRBV16S1A1N1A0A5B0 115 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms