RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 RPAP3Q9H6T3 665 aaPredicted RBP13.39□□□□□ -0.27
TCOF1-205ENST00000439160 NXF1Q9UBU9 619 aaKnown RBP13.39□□□□□ -0.27
TCOF1-205ENST00000439160 FAM169AQ9Y6X4 670 aa13.39□□□□□ -0.27
TCOF1-205ENST00000439160 OAS2P29728 719 aaKnown RBP13.38□□□□□ -0.27
TCOF1-205ENST00000439160 ORC2Q13416 577 aaPredicted RBP13.38□□□□□ -0.27
TCOF1-205ENST00000439160 STXBP2Q15833 593 aa13.38□□□□□ -0.27
TCOF1-205ENST00000439160 CEP55Q53EZ4 464 aa13.38□□□□□ -0.27
TCOF1-205ENST00000439160 TBC1D22BQ9NU19 505 aa13.38□□□□□ -0.27
TCOF1-205ENST00000439160 PRR12Q9ULL5 1215 aa13.38□□□□□ -0.27
TCOF1-205ENST00000439160 MYO1FO00160 1098 aa13.38□□□□□ -0.27
TCOF1-205ENST00000439160 NR3C1P04150 777 aa13.38□□□□□ -0.27
TCOF1-205ENST00000439160 SRGNP10124 158 aa13.38□□□□□ -0.27
TCOF1-205ENST00000439160 IQCB1Q15051 598 aa13.38□□□□□ -0.27
TCOF1-205ENST00000439160 TOGARAM2Q6ZUX3 1019 aa13.38□□□□□ -0.27
TCOF1-205ENST00000439160 APOBEC3FQ8IUX4 373 aaKnown RBP13.38□□□□□ -0.27
TCOF1-205ENST00000439160 CCDC170Q8IYT3 715 aa13.38□□□□□ -0.27
TCOF1-205ENST00000439160 HACE1Q8IYU2 909 aa13.38□□□□□ -0.27
TCOF1-205ENST00000439160 CCSER1Q9C0I3 900 aa13.38□□□□□ -0.27
TCOF1-205ENST00000439160 JMJD4Q9H9V9 463 aa13.38□□□□□ -0.27
TCOF1-205ENST00000439160 GABPB1Q06547 395 aaPredicted RBP13.38□□□□□ -0.27
TCOF1-205ENST00000439160 STYK1Q6J9G0 422 aa13.38□□□□□ -0.27
TCOF1-205ENST00000439160 LXNQ9BS40 222 aa13.38□□□□□ -0.27
TCOF1-205ENST00000439160 FMR1Q06787 632 aaKnown RBP eCLIP13.38□□□□□ -0.271e-6■■■■□ 20.4
TCOF1-205ENST00000439160 KRT71Q3SY84 523 aa13.38□□□□□ -0.27
TCOF1-205ENST00000439160 FAM151AQ8WW52 585 aa13.38□□□□□ -0.27
TCOF1-205ENST00000439160 ZNF653Q96CK0 615 aa13.38□□□□□ -0.27
TCOF1-205ENST00000439160 EIF2AK1Q9BQI3 630 aaKnown RBP13.38□□□□□ -0.27
TCOF1-205ENST00000439160 HESX1Q9UBX0 185 aa13.38□□□□□ -0.27
TCOF1-205ENST00000439160 SLC16A4O15374 487 aa13.37□□□□□ -0.27
TCOF1-205ENST00000439160 QARSP47897 775 aaKnown RBP13.37□□□□□ -0.27
TCOF1-205ENST00000439160 JAK3P52333 1124 aa13.37□□□□□ -0.27
TCOF1-205ENST00000439160 SAMD7Q7Z3H4 446 aa13.37□□□□□ -0.27
TCOF1-205ENST00000439160 PRMT6Q96LA8 375 aaPredicted RBP13.37□□□□□ -0.27
TCOF1-205ENST00000439160 SERPINA10Q9UK55 444 aa13.37□□□□□ -0.27
TCOF1-205ENST00000439160 TCRBV5S4A2TA0A5A2 114 aa13.37□□□□□ -0.27
TCOF1-205ENST00000439160 BPIFB4P59827 614 aa13.37□□□□□ -0.27
TCOF1-205ENST00000439160 GUCY2DQ02846 1103 aa13.37□□□□□ -0.27
TCOF1-205ENST00000439160 ZBTB16Q05516 673 aa13.37□□□□□ -0.27
TCOF1-205ENST00000439160 PHLDB2Q86SQ0 1253 aa13.37□□□□□ -0.27
TCOF1-205ENST00000439160 RAB17Q9H0T7 212 aa13.37□□□□□ -0.27
TCOF1-205ENST00000439160 ABHD10Q9NUJ1 306 aa13.37□□□□□ -0.27
TCOF1-205ENST00000439160 KCNH2Q12809 1159 aa13.37□□□□□ -0.27
TCOF1-205ENST00000439160 SWSAP1Q6NVH7 229 aa13.37□□□□□ -0.27
TCOF1-205ENST00000439160 ALKBH5Q6P6C2 394 aaKnown RBP13.37□□□□□ -0.27
TCOF1-205ENST00000439160 GUF1Q8N442 669 aaKnown RBP13.37□□□□□ -0.27
TCOF1-205ENST00000439160 RABGGTAQ92696 567 aa13.37□□□□□ -0.27
TCOF1-205ENST00000439160 CCDC97Q96F63 343 aaPredicted RBP13.37□□□□□ -0.27
TCOF1-205ENST00000439160 NKIRAS1Q9NYS0 192 aa13.37□□□□□ -0.27
TCOF1-205ENST00000439160 GABBR1Q9UBS5 961 aa13.37□□□□□ -0.27
TCOF1-205ENST00000439160 TTC26A0AVF1 554 aa13.36□□□□□ -0.27
TCOF1-205ENST00000439160 SERPING1P05155 500 aa13.36□□□□□ -0.27
TCOF1-205ENST00000439160 P4HBP07237 508 aaKnown RBP13.36□□□□□ -0.27
TCOF1-205ENST00000439160 CD58P19256 250 aa13.36□□□□□ -0.27
TCOF1-205ENST00000439160 KRT76Q01546 638 aa13.36□□□□□ -0.27
TCOF1-205ENST00000439160 KRT12Q99456 494 aa13.36□□□□□ -0.27
TCOF1-205ENST00000439160 FEZ2Q9UHY8 353 aaPredicted RBP13.36□□□□□ -0.27
TCOF1-205ENST00000439160 PCDHA13Q9Y5I0 950 aa13.36□□□□□ -0.27
TCOF1-205ENST00000439160 UBR1Q8IWV7 1749 aa13.36□□□□□ -0.27
TCOF1-205ENST00000439160 VIMP08670 466 aaKnown RBP13.36□□□□□ -0.27
TCOF1-205ENST00000439160 GCLMP48507 274 aa13.36□□□□□ -0.27
TCOF1-205ENST00000439160 KNOP1Q1ED39 458 aaKnown RBP13.36□□□□□ -0.27
TCOF1-205ENST00000439160 ZMYND12Q9H0C1 365 aa13.36□□□□□ -0.27
TCOF1-205ENST00000439160 FBXO40Q9UH90 709 aa13.36□□□□□ -0.27
TCOF1-205ENST00000439160 TTLL3Q9Y4R7 772 aa13.36□□□□□ -0.27
TCOF1-205ENST00000439160 PHLPP2Q6ZVD8 1323 aa13.36□□□□□ -0.27
TCOF1-205ENST00000439160 THAP12O43422 761 aa13.36□□□□□ -0.27
TCOF1-205ENST00000439160 SF3A3Q12874 501 aaKnown RBP eCLIP13.36□□□□□ -0.27
TCOF1-205ENST00000439160 PDIA5Q14554 519 aa13.36□□□□□ -0.27
TCOF1-205ENST00000439160 KAZNQ674X7 775 aa13.36□□□□□ -0.27
TCOF1-205ENST00000439160 RUFY4Q6ZNE9 571 aa13.36□□□□□ -0.27
TCOF1-205ENST00000439160 THNSL1Q8IYQ7 743 aa13.36□□□□□ -0.27
TCOF1-205ENST00000439160 TAB3Q8N5C8 712 aaPredicted RBP13.36□□□□□ -0.27
TCOF1-205ENST00000439160 CCDC89Q8N998 374 aa13.36□□□□□ -0.27
TCOF1-205ENST00000439160 UHMK1Q8TAS1 419 aaKnown RBP13.36□□□□□ -0.27
TCOF1-205ENST00000439160 NLRP7Q8WX94 980 aa13.36□□□□□ -0.27
TCOF1-205ENST00000439160 BEGAINQ9BUH8 593 aa13.36□□□□□ -0.27
TCOF1-205ENST00000439160 RTFDC1Q9BY42 306 aaPredicted RBP13.36□□□□□ -0.27
TCOF1-205ENST00000439160 MAD2L2Q9UI95 211 aa13.36□□□□□ -0.27
TCOF1-205ENST00000439160 POLR2BP30876 1174 aaKnown RBP13.36□□□□□ -0.27
TCOF1-205ENST00000439160 ARL1P40616 181 aaPredicted RBP13.36□□□□□ -0.27
TCOF1-205ENST00000439160 PPP2R5DQ14738 602 aa13.36□□□□□ -0.27
TCOF1-205ENST00000439160 NAA30Q147X3 362 aaPredicted RBP13.36□□□□□ -0.27
TCOF1-205ENST00000439160 ANGEL2Q5VTE6 544 aaKnown RBP13.36□□□□□ -0.27
TCOF1-205ENST00000439160 ANKRD40Q6AI12 368 aa13.36□□□□□ -0.27
TCOF1-205ENST00000439160 PROM2Q8N271 834 aa13.36□□□□□ -0.27
TCOF1-205ENST00000439160 ANKS4BQ8N8V4 417 aa13.36□□□□□ -0.27
TCOF1-205ENST00000439160 ZNF668Q96K58 619 aaPredicted RBP13.36□□□□□ -0.27
TCOF1-205ENST00000439160 RAB20Q9NX57 234 aa13.36□□□□□ -0.27
TCOF1-205ENST00000439160 NPHP3-ACAD11A0A0J9YXS1 232 aa13.35□□□□□ -0.27
TCOF1-205ENST00000439160 ZNF233A6NK53 670 aa13.35□□□□□ -0.27
TCOF1-205ENST00000439160 USP27XA6NNY8 438 aa13.35□□□□□ -0.27
TCOF1-205ENST00000439160 NDUFAB1O14561 156 aa13.35□□□□□ -0.27
TCOF1-205ENST00000439160 STAM2O75886 525 aa13.35□□□□□ -0.27
TCOF1-205ENST00000439160 CLUL1Q15846 466 aa13.35□□□□□ -0.27
TCOF1-205ENST00000439160 MSTO1Q9BUK6 570 aa13.35□□□□□ -0.27
TCOF1-205ENST00000439160 FAM49AQ9H0Q0 323 aaPredicted RBP13.35□□□□□ -0.27
TCOF1-205ENST00000439160 AP5M1Q9H0R1 490 aa13.35□□□□□ -0.27
TCOF1-205ENST00000439160 VCPKMTQ9H867 229 aa13.35□□□□□ -0.27
TCOF1-205ENST00000439160 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.35□□□□□ -0.27
TCOF1-205ENST00000439160 PDS5AQ29RF7 1337 aaKnown RBP13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms