RNA–Protein interactions for RNA: ENST00000421625.6

USP48-205, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 2,818 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-205ENST00000421625 PIGSQ96S52 555 aa23.28■■□□□ 1.32
USP48-205ENST00000421625 GANQ9H2C0 597 aa23.28■■□□□ 1.32
USP48-205ENST00000421625 CES2O00748 559 aa23.27■■□□□ 1.32
USP48-205ENST00000421625 EDIL3O43854 480 aa23.27■■□□□ 1.32
USP48-205ENST00000421625 ACTN1P12814 892 aa23.27■■□□□ 1.32
USP48-205ENST00000421625 NF2P35240 595 aa23.27■■□□□ 1.32
USP48-205ENST00000421625 PSMD2Q13200 908 aa23.27■■□□□ 1.32
USP48-205ENST00000421625 TRIM59Q8IWR1 403 aa23.27■■□□□ 1.32
USP48-205ENST00000421625 ZNF444Q8N0Y2 327 aaPredicted RBP23.27■■□□□ 1.32
USP48-205ENST00000421625 METTL13Q8N6R0 699 aa23.27■■□□□ 1.32
USP48-205ENST00000421625 ACTRT1Q8TDG2 376 aa23.27■■□□□ 1.32
USP48-205ENST00000421625 SH3RF3Q8TEJ3 882 aaPredicted RBP23.27■■□□□ 1.32
USP48-205ENST00000421625 TATDN2Q93075 761 aa23.27■■□□□ 1.32
USP48-205ENST00000421625 DNAJC19Q96DA6 116 aa23.27■■□□□ 1.32
USP48-205ENST00000421625 SCP2P22307 547 aa23.27■■□□□ 1.32
USP48-205ENST00000421625 AGBL2Q5U5Z8 902 aa23.27■■□□□ 1.32
USP48-205ENST00000421625 CHADLQ6NUI6 762 aa23.27■■□□□ 1.32
USP48-205ENST00000421625 ZNF571Q7Z3V5 609 aaPredicted RBP23.27■■□□□ 1.32
USP48-205ENST00000421625 LRRC57Q8N9N7 239 aa23.27■■□□□ 1.32
USP48-205ENST00000421625 GJA10Q969M2 543 aa23.27■■□□□ 1.32
USP48-205ENST00000421625 PBKQ96KB5 322 aa23.27■■□□□ 1.32
USP48-205ENST00000421625 PGRMC1O00264 195 aaKnown RBP23.26■■□□□ 1.31
USP48-205ENST00000421625 ZBTB48P10074 688 aaPredicted RBP23.26■■□□□ 1.31
USP48-205ENST00000421625 HIBADHP31937 336 aaKnown RBP23.26■■□□□ 1.31
USP48-205ENST00000421625 TMEM266Q2M3C6 531 aa23.26■■□□□ 1.31
USP48-205ENST00000421625 DZIP1Q86YF9 867 aaKnown RBP23.26■■□□□ 1.31
USP48-205ENST00000421625 TACO1Q9BSH4 297 aaKnown RBP23.26■■□□□ 1.31
USP48-205ENST00000421625 E2F5Q15329 346 aa23.26■■□□□ 1.31
USP48-205ENST00000421625 FAM26FQ5R3K3 315 aa23.26■■□□□ 1.31
USP48-205ENST00000421625 TMC3Q7Z5M5 1100 aa23.26■■□□□ 1.31
USP48-205ENST00000421625 MDM1Q8TC05 714 aa23.26■■□□□ 1.31
USP48-205ENST00000421625 LZTS2Q9BRK4 669 aa23.26■■□□□ 1.31
USP48-205ENST00000421625 EPB41L3Q9Y2J2 1087 aaPredicted RBP23.26■■□□□ 1.31
USP48-205ENST00000421625 TMCO5BA8MYB1 307 aa23.25■■□□□ 1.31
USP48-205ENST00000421625 KRIT1O00522 736 aa23.25■■□□□ 1.31
USP48-205ENST00000421625 PAEPP09466 180 aa23.25■■□□□ 1.31
USP48-205ENST00000421625 KRT71Q3SY84 523 aa23.25■■□□□ 1.31
USP48-205ENST00000421625 TMEM119Q4V9L6 283 aa23.25■■□□□ 1.31
USP48-205ENST00000421625 KRT79Q5XKE5 535 aa23.25■■□□□ 1.31
USP48-205ENST00000421625 CELF4Q9BZC1 486 aaKnown RBP23.25■■□□□ 1.31
USP48-205ENST00000421625 PANK4Q9NVE7 773 aa23.25■■□□□ 1.31
USP48-205ENST00000421625 EP400Q96L91 3159 aa23.25■■□□□ 1.31
USP48-205ENST00000421625 MYH7BA7E2Y1 1941 aa23.25■■□□□ 1.31
USP48-205ENST00000421625 TTI1O43156 1089 aa23.25■■□□□ 1.31
USP48-205ENST00000421625 CACNB1Q02641 598 aaPredicted RBP23.25■■□□□ 1.31
USP48-205ENST00000421625 NRAPQ86VF7 1730 aa23.25■■□□□ 1.31
USP48-205ENST00000421625 BUD13Q9BRD0 619 aaKnown RBP eCLIP23.25■■□□□ 1.312e-7■■□□□ 11.8
USP48-205ENST00000421625 SEC63Q9UGP8 760 aaKnown RBP23.25■■□□□ 1.31
USP48-205ENST00000421625 SAP30BPQ9UHR5 308 aaKnown RBP23.25■■□□□ 1.31
USP48-205ENST00000421625 RASA1P20936 1047 aa23.24■■□□□ 1.31
USP48-205ENST00000421625 CPLX4Q7Z7G2 160 aa23.24■■□□□ 1.31
USP48-205ENST00000421625 UBA5Q9GZZ9 404 aa23.24■■□□□ 1.31
USP48-205ENST00000421625 DPH5Q9H2P9 285 aa23.24■■□□□ 1.31
USP48-205ENST00000421625 DRD4P21917 467 aa23.24■■□□□ 1.31
USP48-205ENST00000421625 DHX9Q08211 1270 aaKnown RBP23.24■■□□□ 1.31
USP48-205ENST00000421625 SF3A3Q12874 501 aaKnown RBP eCLIP23.24■■□□□ 1.31
USP48-205ENST00000421625 TXNRD3Q86VQ6 643 aa23.24■■□□□ 1.31
USP48-205ENST00000421625 CCT6BQ92526 530 aa23.24■■□□□ 1.31
USP48-205ENST00000421625 HVCN1Q96D96 273 aa23.24■■□□□ 1.31
USP48-205ENST00000421625 BTNL10A8MVZ5 291 aa23.23■■□□□ 1.31
USP48-205ENST00000421625 MTMR3Q13615 1198 aa23.23■■□□□ 1.31
USP48-205ENST00000421625 LACTB2Q53H82 288 aaPredicted RBP23.23■■□□□ 1.31
USP48-205ENST00000421625 GKAP1Q5VSY0 366 aaPredicted RBP23.23■■□□□ 1.31
USP48-205ENST00000421625 BARGINQ6ZT62 677 aa23.23■■□□□ 1.31
USP48-205ENST00000421625 IRF2BP2Q7Z5L9 587 aa23.23■■□□□ 1.31
USP48-205ENST00000421625 CALR3Q96L12 384 aaKnown RBP23.23■■□□□ 1.31
USP48-205ENST00000421625 CEP63Q96MT8 703 aa23.23■■□□□ 1.31
USP48-205ENST00000421625 F8VZ95 297 aa23.23■■□□□ 1.31
USP48-205ENST00000421625 F8W031 263 aaPredicted RBP23.23■■□□□ 1.31
USP48-205ENST00000421625 EPS15P42566 896 aa23.23■■□□□ 1.31
USP48-205ENST00000421625 FOXR2Q6PJQ5 311 aa23.23■■□□□ 1.31
USP48-205ENST00000421625 NPHP3-ACAD11A0A0J9YXS1 232 aa23.23■■□□□ 1.31
USP48-205ENST00000421625 KIF1CO43896 1103 aaKnown RBP23.23■■□□□ 1.31
USP48-205ENST00000421625 SLC9A1P19634 815 aa23.22■■□□□ 1.31
USP48-205ENST00000421625 KCNH2Q12809 1159 aa23.22■■□□□ 1.31
USP48-205ENST00000421625 XRCC4Q13426 336 aa23.22■■□□□ 1.31
USP48-205ENST00000421625 SF3B3Q15393 1217 aaKnown RBP23.22■■□□□ 1.31
USP48-205ENST00000421625 TPCN2Q8NHX9 752 aa23.22■■□□□ 1.31
USP48-205ENST00000421625 TGFBRAP1Q8WUH2 860 aa23.22■■□□□ 1.31
USP48-205ENST00000421625 COA7Q96BR5 231 aa23.22■■□□□ 1.31
USP48-205ENST00000421625 UIMC1Q96RL1 719 aa23.22■■□□□ 1.31
USP48-205ENST00000421625 PSMD1Q99460 953 aa23.22■■□□□ 1.31
USP48-205ENST00000421625 TRIM31Q9BZY9 425 aa23.22■■□□□ 1.31
USP48-205ENST00000421625 VEZTQ9HBM0 779 aa23.22■■□□□ 1.31
USP48-205ENST00000421625 NAGPAQ9UK23 515 aa23.22■■□□□ 1.31
USP48-205ENST00000421625 ROBO3Q96MS0 1386 aa23.22■■□□□ 1.31
USP48-205ENST00000421625 ORC2Q13416 577 aaPredicted RBP23.21■■□□□ 1.31
USP48-205ENST00000421625 FAM212AQ96EL1 285 aa23.21■■□□□ 1.31
USP48-205ENST00000421625 RAB34Q9BZG1 259 aa23.21■■□□□ 1.31
USP48-205ENST00000421625 WNK3Q9BYP7 1800 aa23.21■■□□□ 1.31
USP48-205ENST00000421625 PDIA5Q14554 519 aa23.21■■□□□ 1.31
USP48-205ENST00000421625 DIXDC1Q155Q3 683 aa23.21■■□□□ 1.31
USP48-205ENST00000421625 ALKBH5Q6P6C2 394 aaKnown RBP23.21■■□□□ 1.31
USP48-205ENST00000421625 PEX26Q7Z412 305 aa23.21■■□□□ 1.31
USP48-205ENST00000421625 TRIM51Q9BSJ1 452 aa23.21■■□□□ 1.31
USP48-205ENST00000421625 LRRC27Q9C0I9 530 aa23.21■■□□□ 1.31
USP48-205ENST00000421625 PNMA2Q9UL42 364 aa23.21■■□□□ 1.31
USP48-205ENST00000421625 MARSP56192 900 aaKnown RBP23.2■■□□□ 1.3
USP48-205ENST00000421625 CCDC50Q8IVM0 306 aa23.2■■□□□ 1.3
USP48-205ENST00000421625 DHX37Q8IY37 1157 aaKnown RBP23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms