RNA–Protein interactions for RNA: ENST00000399275.6

SMAD9-203, Transcript of SMAD family member 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMAD9, Length 5,389 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-203ENST00000399275 PYGBP11216 843 aa10.33□□□□□ -0.76
SMAD9-203ENST00000399275 ZAP70P43403 619 aa10.33□□□□□ -0.76
SMAD9-203ENST00000399275 CEBPAP49715 358 aaPredicted RBP10.33□□□□□ -0.76
SMAD9-203ENST00000399275 SF3B3Q15393 1217 aaKnown RBP10.33□□□□□ -0.76
SMAD9-203ENST00000399275 PUM3Q15397 648 aaKnown RBP10.33□□□□□ -0.76
SMAD9-203ENST00000399275 CCDC85BQ15834 202 aaPredicted RBP10.33□□□□□ -0.76
SMAD9-203ENST00000399275 DCAF17Q5H9S7 520 aaPredicted RBP10.33□□□□□ -0.76
SMAD9-203ENST00000399275 C1orf146Q5VVC0 180 aa10.33□□□□□ -0.76
SMAD9-203ENST00000399275 CUEDC2Q9H467 287 aa10.33□□□□□ -0.76
SMAD9-203ENST00000399275 THAP9Q9H5L6 903 aa10.33□□□□□ -0.76
SMAD9-203ENST00000399275 PPME1Q9Y570 386 aa10.33□□□□□ -0.76
SMAD9-203ENST00000399275 ADGRG1Q9Y653 693 aa10.33□□□□□ -0.76
SMAD9-203ENST00000399275 STK24Q9Y6E0 443 aa10.33□□□□□ -0.76
SMAD9-203ENST00000399275 NVLO15381 856 aaKnown RBP10.33□□□□□ -0.76
SMAD9-203ENST00000399275 TRAPPC10P48553 1259 aa10.33□□□□□ -0.76
SMAD9-203ENST00000399275 ZBED6P86452 979 aa10.33□□□□□ -0.76
SMAD9-203ENST00000399275 ZNF654Q8IZM8 581 aa10.33□□□□□ -0.76
SMAD9-203ENST00000399275 KRT12Q99456 494 aa10.33□□□□□ -0.76
SMAD9-203ENST00000399275 VPS54Q9P1Q0 977 aa10.33□□□□□ -0.76
SMAD9-203ENST00000399275 SRPRBQ9Y5M8 271 aaKnown RBP10.33□□□□□ -0.76
SMAD9-203ENST00000399275 HOXA7P31268 230 aaPredicted RBP10.33□□□□□ -0.76
SMAD9-203ENST00000399275 CTDSPL2Q05D32 466 aa10.33□□□□□ -0.76
SMAD9-203ENST00000399275 RGS9BPQ6ZS82 235 aa10.33□□□□□ -0.76
SMAD9-203ENST00000399275 TUBGCP2Q9BSJ2 902 aa10.33□□□□□ -0.76
SMAD9-203ENST00000399275 TMEM60Q9H2L4 133 aa10.33□□□□□ -0.76
SMAD9-203ENST00000399275 MBD2Q9UBB5 411 aa10.33□□□□□ -0.76
SMAD9-203ENST00000399275 ZNF532Q9HCE3 1301 aa10.32□□□□□ -0.76
SMAD9-203ENST00000399275 GOLGA8MH3BSY2 632 aa10.32□□□□□ -0.76
SMAD9-203ENST00000399275 BUB1O43683 1085 aa10.32□□□□□ -0.76
SMAD9-203ENST00000399275 KRT38O76015 456 aa10.32□□□□□ -0.76
SMAD9-203ENST00000399275 EIF3BP55884 814 aaKnown RBP10.32□□□□□ -0.76
SMAD9-203ENST00000399275 MYBPC2Q14324 1141 aa10.32□□□□□ -0.76
SMAD9-203ENST00000399275 KRT28Q7Z3Y7 464 aa10.32□□□□□ -0.76
SMAD9-203ENST00000399275 SUGP1Q8IWZ8 645 aaKnown RBP10.32□□□□□ -0.76
SMAD9-203ENST00000399275 KIRREL3Q8IZU9 778 aa10.32□□□□□ -0.76
SMAD9-203ENST00000399275 PSPC1Q8WXF1 523 aaKnown RBP10.32□□□□□ -0.76
SMAD9-203ENST00000399275 LZTS2Q9BRK4 669 aa10.32□□□□□ -0.76
SMAD9-203ENST00000399275 UBE2OQ9C0C9 1292 aaKnown RBP10.32□□□□□ -0.76
SMAD9-203ENST00000399275 TMOD4Q9NZQ9 345 aa10.32□□□□□ -0.76
SMAD9-203ENST00000399275 FHOD1Q9Y613 1164 aa10.32□□□□□ -0.76
SMAD9-203ENST00000399275 PNPLA6Q8IY17 1366 aa10.32□□□□□ -0.76
SMAD9-203ENST00000399275 ESYT2A0FGR8 921 aa10.32□□□□□ -0.76
SMAD9-203ENST00000399275 WDR47O94967 919 aa10.32□□□□□ -0.76
SMAD9-203ENST00000399275 TRIM37O94972 964 aa10.32□□□□□ -0.76
SMAD9-203ENST00000399275 FAM13AO94988 1023 aa10.32□□□□□ -0.76
SMAD9-203ENST00000399275 SCG2P13521 617 aa10.32□□□□□ -0.76
SMAD9-203ENST00000399275 ZNF280DQ6N043 979 aa10.32□□□□□ -0.76
SMAD9-203ENST00000399275 BZW1Q7L1Q6 419 aaKnown RBP10.32□□□□□ -0.76
SMAD9-203ENST00000399275 CDR2LQ86X02 465 aaPredicted RBP10.32□□□□□ -0.76
SMAD9-203ENST00000399275 FANCBQ8NB91 859 aa10.32□□□□□ -0.76
SMAD9-203ENST00000399275 COG1Q8WTW3 980 aa10.32□□□□□ -0.76
SMAD9-203ENST00000399275 FUCA2Q9BTY2 467 aa10.32□□□□□ -0.76
SMAD9-203ENST00000399275 CACYBPQ9HB71 228 aaKnown RBP10.32□□□□□ -0.76
SMAD9-203ENST00000399275 CCNT1O60563 726 aaKnown RBP10.32□□□□□ -0.76
SMAD9-203ENST00000399275 PLA2G4AP47712 749 aa10.32□□□□□ -0.76
SMAD9-203ENST00000399275 CUL1Q13616 776 aa10.32□□□□□ -0.76
SMAD9-203ENST00000399275 RSRC2Q7L4I2 434 aaKnown RBP10.32□□□□□ -0.76
SMAD9-203ENST00000399275 UPF3AQ9H1J1 476 aaKnown RBP10.32□□□□□ -0.76
SMAD9-203ENST00000399275 SNX25Q9H3E2 840 aa10.32□□□□□ -0.76
SMAD9-203ENST00000399275 NHEJ1Q9H9Q4 299 aaPredicted RBP10.32□□□□□ -0.76
SMAD9-203ENST00000399275 TYW1Q9NV66 732 aaKnown RBP10.32□□□□□ -0.76
SMAD9-203ENST00000399275 TLR7Q9NYK1 1049 aaKnown RBP10.32□□□□□ -0.76
SMAD9-203ENST00000399275 EURLQ9NYK6 297 aa10.32□□□□□ -0.76
SMAD9-203ENST00000399275 AFG3L2Q9Y4W6 797 aa10.32□□□□□ -0.76
SMAD9-203ENST00000399275 POTEFA5A3E0 1075 aa10.32□□□□□ -0.76
SMAD9-203ENST00000399275 SEMA3DO95025 777 aa10.32□□□□□ -0.76
SMAD9-203ENST00000399275 MAN1A1P33908 653 aa10.32□□□□□ -0.76
SMAD9-203ENST00000399275 HDLBPQ00341 1268 aaKnown RBP10.32□□□□□ -0.76
SMAD9-203ENST00000399275 CTTNQ14247 550 aaKnown RBP10.32□□□□□ -0.76
SMAD9-203ENST00000399275 CRACR2BQ8N4Y2 399 aaPredicted RBP10.32□□□□□ -0.76
SMAD9-203ENST00000399275 ZNF579Q8NAF0 562 aaKnown RBP10.32□□□□□ -0.76
SMAD9-203ENST00000399275 SUN5Q8TC36 379 aa10.32□□□□□ -0.76
SMAD9-203ENST00000399275 BHMTQ93088 406 aa10.32□□□□□ -0.76
SMAD9-203ENST00000399275 LSM14BQ9BX40 385 aaKnown RBP10.32□□□□□ -0.76
SMAD9-203ENST00000399275 TRPC6Q9Y210 931 aa10.32□□□□□ -0.76
SMAD9-203ENST00000399275 MAGEA13PA6NCF6 341 aa10.31□□□□□ -0.76
SMAD9-203ENST00000399275 MYO1FO00160 1098 aa10.31□□□□□ -0.76
SMAD9-203ENST00000399275 BAIAP3O94812 1187 aa10.31□□□□□ -0.76
SMAD9-203ENST00000399275 MMP1P03956 469 aa10.31□□□□□ -0.76
SMAD9-203ENST00000399275 DAB2IPQ5VWQ8 1189 aa10.31□□□□□ -0.76
SMAD9-203ENST00000399275 TUBA3EQ6PEY2 450 aa10.31□□□□□ -0.76
SMAD9-203ENST00000399275 CCDC149Q6ZUS6 474 aa10.31□□□□□ -0.76
SMAD9-203ENST00000399275 ABHD10Q9NUJ1 306 aa10.31□□□□□ -0.76
SMAD9-203ENST00000399275 IRS4O14654 1257 aaPredicted RBP10.31□□□□□ -0.76
SMAD9-203ENST00000399275 AHCYL1O43865 530 aa10.31□□□□□ -0.76
SMAD9-203ENST00000399275 CDR2Q01850 454 aa10.31□□□□□ -0.76
SMAD9-203ENST00000399275 CYTH1Q15438 398 aa10.31□□□□□ -0.76
SMAD9-203ENST00000399275 PTPN21Q16825 1174 aa10.31□□□□□ -0.76
SMAD9-203ENST00000399275 BEND6Q5SZJ8 279 aaPredicted RBP10.31□□□□□ -0.76
SMAD9-203ENST00000399275 RCSD1Q6JBY9 416 aa10.31□□□□□ -0.76
SMAD9-203ENST00000399275 APOA5Q6Q788 366 aa10.31□□□□□ -0.76
SMAD9-203ENST00000399275 BTNL9Q6UXG8 535 aa10.31□□□□□ -0.76
SMAD9-203ENST00000399275 CATSPER1Q8NEC5 780 aa10.31□□□□□ -0.76
SMAD9-203ENST00000399275 PBKQ96KB5 322 aa10.31□□□□□ -0.76
SMAD9-203ENST00000399275 SYTL2Q9HCH5 934 aa10.31□□□□□ -0.76
SMAD9-203ENST00000399275 RABL2AQ9UBK7 228 aaPredicted RBP10.31□□□□□ -0.76
SMAD9-203ENST00000399275 LRWD1Q9UFC0 647 aa10.31□□□□□ -0.76
SMAD9-203ENST00000399275 BIRC3Q13489 604 aa10.31□□□□□ -0.76
SMAD9-203ENST00000399275 ZSCAN29Q8IWY8 852 aaPredicted RBP10.31□□□□□ -0.76
SMAD9-203ENST00000399275 RAPGEF5Q92565 580 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms