RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 CNKSR2Q8WXI2 1034 aa23.82■■□□□ 1.4
TRIM54-202ENST00000380075 UNCXA6NJT0 531 aa23.81■■□□□ 1.4
TRIM54-202ENST00000380075 KRT18P05783 430 aaKnown RBP23.81■■□□□ 1.4
TRIM54-202ENST00000380075 STAT3P40763 770 aa23.81■■□□□ 1.4
TRIM54-202ENST00000380075 ZNF157P51786 506 aaPredicted RBP23.81■■□□□ 1.4
TRIM54-202ENST00000380075 LRRC41Q15345 812 aa23.81■■□□□ 1.4
TRIM54-202ENST00000380075 NCAPH2Q6IBW4 605 aa23.81■■□□□ 1.4
TRIM54-202ENST00000380075 RGMBQ6NW40 437 aa23.81■■□□□ 1.4
TRIM54-202ENST00000380075 FAM160B2Q86V87 743 aa23.81■■□□□ 1.4
TRIM54-202ENST00000380075 SMAP1Q8IYB5 467 aaPredicted RBP23.81■■□□□ 1.4
TRIM54-202ENST00000380075 SYT2Q8N9I0 419 aaPredicted RBP23.81■■□□□ 1.4
TRIM54-202ENST00000380075 POLR3CQ9BUI4 534 aaPredicted RBP23.81■■□□□ 1.4
TRIM54-202ENST00000380075 EHMT1Q9H9B1 1298 aa23.81■■□□□ 1.4
TRIM54-202ENST00000380075 SPDYE4A6NLX3 237 aa23.8■■□□□ 1.4
TRIM54-202ENST00000380075 CHMP4BP1P59074 171 aa23.8■■□□□ 1.4
TRIM54-202ENST00000380075 HERVK_113P62684 666 aa23.8■■□□□ 1.4
TRIM54-202ENST00000380075 BMS1Q14692 1282 aaKnown RBP23.8■■□□□ 1.4
TRIM54-202ENST00000380075 ZC3H3Q8IXZ2 948 aaKnown RBP23.8■■□□□ 1.4
TRIM54-202ENST00000380075 RANBP17Q9H2T7 1088 aaKnown RBP23.8■■□□□ 1.4
TRIM54-202ENST00000380075 FAM53CQ9NYF3 392 aa23.8■■□□□ 1.4
TRIM54-202ENST00000380075 ZNF76P36508 570 aa23.8■■□□□ 1.4
TRIM54-202ENST00000380075 ECE1P42892 770 aa23.8■■□□□ 1.4
TRIM54-202ENST00000380075 EDRF1Q3B7T1 1238 aa23.8■■□□□ 1.4
TRIM54-202ENST00000380075 TMCO3Q6UWJ1 677 aa23.8■■□□□ 1.4
TRIM54-202ENST00000380075 KIAA1328Q86T90 577 aa23.8■■□□□ 1.4
TRIM54-202ENST00000380075 SPICE1Q8N0Z3 855 aa23.8■■□□□ 1.4
TRIM54-202ENST00000380075 GLIS3Q8NEA6 775 aa23.8■■□□□ 1.4
TRIM54-202ENST00000380075 TSGA10Q9BZW7 698 aa23.8■■□□□ 1.4
TRIM54-202ENST00000380075 VCPKMTQ9H867 229 aa23.8■■□□□ 1.4
TRIM54-202ENST00000380075 PICK1Q9NRD5 415 aa23.8■■□□□ 1.4
TRIM54-202ENST00000380075 EMILIN3Q9NT22 766 aa23.8■■□□□ 1.4
TRIM54-202ENST00000380075 VAV3Q9UKW4 847 aa23.8■■□□□ 1.4
TRIM54-202ENST00000380075 CEP350Q5VT06 3117 aa23.79■■□□□ 1.4
TRIM54-202ENST00000380075 POTEFA5A3E0 1075 aa23.79■■□□□ 1.4
TRIM54-202ENST00000380075 POTEB2H3BUK9 544 aa23.79■■□□□ 1.4
TRIM54-202ENST00000380075 MSH4O15457 936 aa23.79■■□□□ 1.4
TRIM54-202ENST00000380075 ATP8B1O43520 1251 aa23.79■■□□□ 1.4
TRIM54-202ENST00000380075 SPATA31C1P0DKV0 1188 aa23.79■■□□□ 1.4
TRIM54-202ENST00000380075 PTPRAP18433 802 aa23.79■■□□□ 1.4
TRIM54-202ENST00000380075 DEFB115Q30KQ5 88 aa23.79■■□□□ 1.4
TRIM54-202ENST00000380075 TEX35Q5T0J7 233 aa23.79■■□□□ 1.4
TRIM54-202ENST00000380075 POTEGQ6S5H5 508 aa23.79■■□□□ 1.4
TRIM54-202ENST00000380075 POTEEQ6S8J3 1075 aa23.79■■□□□ 1.4
TRIM54-202ENST00000380075 HHIPL1Q96JK4 782 aa23.79■■□□□ 1.4
TRIM54-202ENST00000380075 ASNSP08243 561 aa23.78■■□□□ 1.4
TRIM54-202ENST00000380075 CCDC40Q4G0X9 1142 aa23.78■■□□□ 1.4
TRIM54-202ENST00000380075 ARSHQ5FYA8 562 aa23.78■■□□□ 1.4
TRIM54-202ENST00000380075 CCDC122Q5T0U0 273 aa23.78■■□□□ 1.4
TRIM54-202ENST00000380075 KRT222Q8N1A0 295 aa23.78■■□□□ 1.4
TRIM54-202ENST00000380075 ACER1Q8TDN7 264 aa23.78■■□□□ 1.4
TRIM54-202ENST00000380075 NUCKS1Q9H1E3 243 aaKnown RBP23.78■■□□□ 1.4
TRIM54-202ENST00000380075 KCTD10Q9H3F6 313 aa23.78■■□□□ 1.4
TRIM54-202ENST00000380075 FAM184BQ9ULE4 1060 aa23.78■■□□□ 1.4
TRIM54-202ENST00000380075 GUCA1BQ9UMX6 200 aa23.78■■□□□ 1.4
TRIM54-202ENST00000380075 MRPL11Q9Y3B7 192 aaKnown RBP23.78■■□□□ 1.4
TRIM54-202ENST00000380075 OTOFQ9HC10 1997 aa23.78■■□□□ 1.4
TRIM54-202ENST00000380075 GCOM1H8Y6P7 765 aaPredicted RBP23.78■■□□□ 1.4
TRIM54-202ENST00000380075 POLR2MP0CAP2 368 aa23.78■■□□□ 1.4
TRIM54-202ENST00000380075 FAM83BQ5T0W9 1011 aa23.78■■□□□ 1.4
TRIM54-202ENST00000380075 CYP4F22Q6NT55 531 aa23.78■■□□□ 1.4
TRIM54-202ENST00000380075 PAXIP1Q6ZW49 1069 aaPredicted RBP23.78■■□□□ 1.4
TRIM54-202ENST00000380075 SCFD1Q8WVM8 642 aa23.78■■□□□ 1.4
TRIM54-202ENST00000380075 JAKMIP2Q96AA8 810 aa23.78■■□□□ 1.4
TRIM54-202ENST00000380075 OPTNQ96CV9 577 aa23.78■■□□□ 1.4
TRIM54-202ENST00000380075 CCDC42Q96M95 316 aa23.78■■□□□ 1.4
TRIM54-202ENST00000380075 MMRN2Q9H8L6 949 aa23.78■■□□□ 1.4
TRIM54-202ENST00000380075 ZNF446Q9NWS9 450 aa23.78■■□□□ 1.4
TRIM54-202ENST00000380075 ABL1P00519 1130 aa23.77■■□□□ 1.4
TRIM54-202ENST00000380075 HOXA13P31271 388 aaPredicted RBP23.77■■□□□ 1.4
TRIM54-202ENST00000380075 GRM1Q13255 1194 aa23.77■■□□□ 1.4
TRIM54-202ENST00000380075 GIT2Q14161 759 aa23.77■■□□□ 1.4
TRIM54-202ENST00000380075 SPA17Q15506 151 aa23.77■■□□□ 1.4
TRIM54-202ENST00000380075 NEK11Q8NG66 645 aa23.77■■□□□ 1.4
TRIM54-202ENST00000380075 OTUD5Q96G74 571 aa23.77■■□□□ 1.4
TRIM54-202ENST00000380075 ZHX2Q9Y6X8 837 aa23.77■■□□□ 1.4
TRIM54-202ENST00000380075 IGLV3-22A0A075B6J6 115 aa23.76■■□□□ 1.39
TRIM54-202ENST00000380075 NKRFO15226 690 aaKnown RBP eCLIP23.76■■□□□ 1.39
TRIM54-202ENST00000380075 MUTP22033 750 aa23.76■■□□□ 1.39
TRIM54-202ENST00000380075 GJA5P36382 358 aa23.76■■□□□ 1.39
TRIM54-202ENST00000380075 MKRN3Q13064 507 aaKnown RBP23.76■■□□□ 1.39
TRIM54-202ENST00000380075 ERO1BQ86YB8 467 aa23.76■■□□□ 1.39
TRIM54-202ENST00000380075 RASAL3Q86YV0 1011 aa23.76■■□□□ 1.39
TRIM54-202ENST00000380075 UBE2Q2Q8WVN8 375 aa23.76■■□□□ 1.39
TRIM54-202ENST00000380075 FEM1BQ9UK73 627 aa23.76■■□□□ 1.39
TRIM54-202ENST00000380075 SPDYE5A6NIY4 337 aa23.76■■□□□ 1.39
TRIM54-202ENST00000380075 VAV2P52735 878 aa23.76■■□□□ 1.39
TRIM54-202ENST00000380075 AMPD2Q01433 879 aa23.76■■□□□ 1.39
TRIM54-202ENST00000380075 KIAA1755Q5JYT7 1200 aa23.76■■□□□ 1.39
TRIM54-202ENST00000380075 TANGO6Q9C0B7 1094 aa23.76■■□□□ 1.39
TRIM54-202ENST00000380075 TUFT1Q9NNX1 390 aa23.76■■□□□ 1.39
TRIM54-202ENST00000380075 FAM207AQ9NSI2 230 aaPredicted RBP23.76■■□□□ 1.39
TRIM54-202ENST00000380075 MYO6Q9UM54 1294 aa23.76■■□□□ 1.39
TRIM54-202ENST00000380075 ZRANB2O95218 330 aaKnown RBP eCLIP23.75■■□□□ 1.39
TRIM54-202ENST00000380075 EYA4O95677 639 aa23.75■■□□□ 1.39
TRIM54-202ENST00000380075 TRIM59Q8IWR1 403 aa23.75■■□□□ 1.39
TRIM54-202ENST00000380075 TXLNBQ8N3L3 684 aa23.75■■□□□ 1.39
TRIM54-202ENST00000380075 TRAF3IP3Q9Y228 551 aa23.75■■□□□ 1.39
TRIM54-202ENST00000380075 NPHP3-ACAD11A0A0J9YXS1 232 aa23.74■■□□□ 1.39
TRIM54-202ENST00000380075 FAM155AB1AL88 458 aaPredicted RBP23.74■■□□□ 1.39
TRIM54-202ENST00000380075 CETN3O15182 167 aa23.74■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms