RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 MAF1Q9H063 256 aa10.02□□□□□ -0.81
VPS39-207ENST00000563692 TTC12Q9H892 705 aaPredicted RBP10.02□□□□□ -0.81
VPS39-207ENST00000563692 SLC38A10Q9HBR0 1119 aa10.02□□□□□ -0.81
VPS39-207ENST00000563692 RAVER2Q9HCJ3 691 aaKnown RBP10.02□□□□□ -0.81
VPS39-207ENST00000563692 MAN1B1Q9UKM7 699 aa10.02□□□□□ -0.81
VPS39-207ENST00000563692 COLQQ9Y215 455 aaPredicted RBP10.02□□□□□ -0.81
VPS39-207ENST00000563692 CEP290O15078 2479 aa10.01□□□□□ -0.81
VPS39-207ENST00000563692 PLXNB2O15031 1838 aa10.01□□□□□ -0.81
VPS39-207ENST00000563692 A0A087X0B3 334 aa10.01□□□□□ -0.81
VPS39-207ENST00000563692 DNM1LO00429 736 aa10.01□□□□□ -0.81
VPS39-207ENST00000563692 IKBKBO14920 756 aa10.01□□□□□ -0.81
VPS39-207ENST00000563692 SLC37A4O43826 429 aa10.01□□□□□ -0.81
VPS39-207ENST00000563692 TPM3P06753 285 aa10.01□□□□□ -0.81
VPS39-207ENST00000563692 RARBP10826 455 aa10.01□□□□□ -0.81
VPS39-207ENST00000563692 CDC25AP30304 524 aa10.01□□□□□ -0.81
VPS39-207ENST00000563692 HOXA13P31271 388 aaPredicted RBP10.01□□□□□ -0.81
VPS39-207ENST00000563692 DPYDQ12882 1025 aa10.01□□□□□ -0.81
VPS39-207ENST00000563692 MORC3Q14149 939 aa10.01□□□□□ -0.81
VPS39-207ENST00000563692 KARSQ15046 597 aaKnown RBP10.01□□□□□ -0.81
VPS39-207ENST00000563692 DPCR1Q3MIW9 517 aa10.01□□□□□ -0.81
VPS39-207ENST00000563692 ISM2Q6H9L7 571 aa10.01□□□□□ -0.81
VPS39-207ENST00000563692 PDXDC2PQ6P474 469 aa10.01□□□□□ -0.81
VPS39-207ENST00000563692 AGBL1Q96MI9 1066 aa10.01□□□□□ -0.81
VPS39-207ENST00000563692 TINF2Q9BSI4 451 aa10.01□□□□□ -0.81
VPS39-207ENST00000563692 TRIM5Q9C035 493 aa10.01□□□□□ -0.81
VPS39-207ENST00000563692 SENP6Q9GZR1 1112 aaPredicted RBP10.01□□□□□ -0.81
VPS39-207ENST00000563692 NT5C3AQ9H0P0 336 aa10.01□□□□□ -0.81
VPS39-207ENST00000563692 HOMER2Q9NSB8 354 aa10.01□□□□□ -0.81
VPS39-207ENST00000563692 A0A0G2JMZ2 1700 aa10□□□□□ -0.81
VPS39-207ENST00000563692 EDIL3O43854 480 aa10□□□□□ -0.81
VPS39-207ENST00000563692 PRR29P0C7W0 189 aa10□□□□□ -0.81
VPS39-207ENST00000563692 ALAS1P13196 640 aa10□□□□□ -0.81
VPS39-207ENST00000563692 ERCC5P28715 1186 aaPredicted RBP10□□□□□ -0.81
VPS39-207ENST00000563692 MNX1P50219 401 aaPredicted RBP10□□□□□ -0.81
VPS39-207ENST00000563692 MYL5Q02045 173 aa10□□□□□ -0.81
VPS39-207ENST00000563692 ZNF792Q3KQV3 632 aa10□□□□□ -0.81
VPS39-207ENST00000563692 TKFCQ3LXA3 575 aa10□□□□□ -0.81
VPS39-207ENST00000563692 PRR16Q569H4 304 aa10□□□□□ -0.81
VPS39-207ENST00000563692 PRAMEF19Q5SWL8 479 aa10□□□□□ -0.81
VPS39-207ENST00000563692 SV2BQ7L1I2 683 aa10□□□□□ -0.81
VPS39-207ENST00000563692 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10□□□□□ -0.81
VPS39-207ENST00000563692 DHX40Q8IX18 779 aaKnown RBP10□□□□□ -0.81
VPS39-207ENST00000563692 GRAMD1CQ8IYS0 662 aa10□□□□□ -0.81
VPS39-207ENST00000563692 KCTD17Q8N5Z5 321 aa10□□□□□ -0.81
VPS39-207ENST00000563692 AOPEPQ8N6M6 819 aa10□□□□□ -0.81
VPS39-207ENST00000563692 TRPV1Q8NER1 839 aa10□□□□□ -0.81
VPS39-207ENST00000563692 CRYGNQ8WXF5 182 aa10□□□□□ -0.81
VPS39-207ENST00000563692 HAS1Q92839 578 aa10□□□□□ -0.81
VPS39-207ENST00000563692 ACAD9Q9H845 621 aa10□□□□□ -0.81
VPS39-207ENST00000563692 BMP2KQ9NSY1 1161 aaPredicted RBP10□□□□□ -0.81
VPS39-207ENST00000563692 KBTBD4Q9NVX7 518 aa10□□□□□ -0.81
VPS39-207ENST00000563692 STK17AQ9UEE5 414 aa10□□□□□ -0.81
VPS39-207ENST00000563692 RIPK3Q9Y572 518 aa10□□□□□ -0.81
VPS39-207ENST00000563692 KDM3AQ9Y4C1 1321 aa10□□□□□ -0.81
VPS39-207ENST00000563692 ZNF236Q9UL36 1845 aa10□□□□□ -0.81
VPS39-207ENST00000563692 PP2D1A8MPX8 630 aa9.99□□□□□ -0.81
VPS39-207ENST00000563692 POTEB2H3BUK9 544 aa9.99□□□□□ -0.81
VPS39-207ENST00000563692 OPLAHO14841 1288 aa9.99□□□□□ -0.81
VPS39-207ENST00000563692 IGHA2P01877 340 aa9.99□□□□□ -0.81
VPS39-207ENST00000563692 RPN1P04843 607 aaKnown RBP9.99□□□□□ -0.81
VPS39-207ENST00000563692 COL6A1P12109 1028 aa9.99□□□□□ -0.81
VPS39-207ENST00000563692 AKR1A1P14550 325 aa9.99□□□□□ -0.81
VPS39-207ENST00000563692 PLCG1P19174 1290 aa9.99□□□□□ -0.81
VPS39-207ENST00000563692 HSD17B4P51659 736 aa9.99□□□□□ -0.81
VPS39-207ENST00000563692 GJC2Q5T442 439 aaPredicted RBP9.99□□□□□ -0.81
VPS39-207ENST00000563692 HAUS3Q68CZ6 603 aa9.99□□□□□ -0.81
VPS39-207ENST00000563692 SARM1Q6SZW1 724 aa9.99□□□□□ -0.81
VPS39-207ENST00000563692 ZNF467Q7Z7K2 595 aaPredicted RBP9.99□□□□□ -0.81
VPS39-207ENST00000563692 RNF180Q86T96 592 aa9.99□□□□□ -0.81
VPS39-207ENST00000563692 DRC7Q8IY82 874 aa9.99□□□□□ -0.81
VPS39-207ENST00000563692 ENOX1Q8TC92 643 aaKnown RBP9.99□□□□□ -0.81
VPS39-207ENST00000563692 SNX29Q8TEQ0 813 aa9.99□□□□□ -0.81
VPS39-207ENST00000563692 TBC1D5Q92609 795 aa9.99□□□□□ -0.81
VPS39-207ENST00000563692 TRERF1Q96PN7 1200 aa9.99□□□□□ -0.81
VPS39-207ENST00000563692 C7orf25Q9BPX7 421 aa9.99□□□□□ -0.81
VPS39-207ENST00000563692 KCNMB3Q9NPA1 279 aa9.99□□□□□ -0.81
VPS39-207ENST00000563692 XPNPEP3Q9NQH7 507 aa9.99□□□□□ -0.81
VPS39-207ENST00000563692 RNF146Q9NTX7 359 aa9.99□□□□□ -0.81
VPS39-207ENST00000563692 PRKAG2Q9UGJ0 569 aa9.99□□□□□ -0.81
VPS39-207ENST00000563692 ZHX1Q9UKY1 873 aaPredicted RBP9.99□□□□□ -0.81
VPS39-207ENST00000563692 ZMYND8Q9ULU4 1186 aaPredicted RBP9.99□□□□□ -0.81
VPS39-207ENST00000563692 PFASO15067 1338 aa9.99□□□□□ -0.81
VPS39-207ENST00000563692 ZNF536O15090 1300 aa9.99□□□□□ -0.81
VPS39-207ENST00000563692 SYNGAP1Q96PV0 1343 aa9.99□□□□□ -0.81
VPS39-207ENST00000563692 RLFQ13129 1914 aa9.99□□□□□ -0.81
VPS39-207ENST00000563692 A0A087WWV3 80 aa9.98□□□□□ -0.81
VPS39-207ENST00000563692 CBFA2T2O43439 604 aa9.98□□□□□ -0.81
VPS39-207ENST00000563692 CCT6AP40227 531 aaKnown RBP9.98□□□□□ -0.81
VPS39-207ENST00000563692 PPP1R2P41236 205 aa9.98□□□□□ -0.81
VPS39-207ENST00000563692 ZNF75DP51815 510 aa9.98□□□□□ -0.81
VPS39-207ENST00000563692 ATN1P54259 1190 aaPredicted RBP9.98□□□□□ -0.81
VPS39-207ENST00000563692 SETQ01105 290 aaPredicted RBP9.98□□□□□ -0.81
VPS39-207ENST00000563692 GHRHRQ02643 423 aa9.98□□□□□ -0.81
VPS39-207ENST00000563692 STIM1Q13586 685 aa9.98□□□□□ -0.81
VPS39-207ENST00000563692 KCNB1Q14721 858 aa9.98□□□□□ -0.81
VPS39-207ENST00000563692 ZNF658Q5TYW1 1059 aaPredicted RBP9.98□□□□□ -0.81
VPS39-207ENST00000563692 XRRA1Q6P2D8 792 aa9.98□□□□□ -0.81
VPS39-207ENST00000563692 RNF207Q6ZRF8 634 aa9.98□□□□□ -0.81
VPS39-207ENST00000563692 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.98□□□□□ -0.81
VPS39-207ENST00000563692 PLA2G4DQ86XP0 818 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms