RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 CAVIN3Q969G5 261 aa12.39□□□□□ -0.43
LDLR-208ENST00000558518 PURBQ96QR8 312 aaKnown RBP12.39□□□□□ -0.43
LDLR-208ENST00000558518 CCSER1Q9C0I3 900 aa12.39□□□□□ -0.43
LDLR-208ENST00000558518 TNS3Q68CZ2 1445 aa12.39□□□□□ -0.43
LDLR-208ENST00000558518 FOXO6A8MYZ6 492 aa12.39□□□□□ -0.43
LDLR-208ENST00000558518 SERPING1P05155 500 aa12.39□□□□□ -0.43
LDLR-208ENST00000558518 HIBADHP31937 336 aaKnown RBP12.39□□□□□ -0.43
LDLR-208ENST00000558518 SCTRP47872 440 aa12.39□□□□□ -0.43
LDLR-208ENST00000558518 TRIM68Q6AZZ1 485 aa12.39□□□□□ -0.43
LDLR-208ENST00000558518 RUFY4Q6ZNE9 571 aa12.39□□□□□ -0.43
LDLR-208ENST00000558518 TXNRD3Q86VQ6 643 aa12.39□□□□□ -0.43
LDLR-208ENST00000558518 FUKQ8N0W3 1084 aa12.39□□□□□ -0.43
LDLR-208ENST00000558518 WHAMMQ8TF30 809 aa12.39□□□□□ -0.43
LDLR-208ENST00000558518 BAP1Q92560 729 aa12.39□□□□□ -0.43
LDLR-208ENST00000558518 UTP11Q9Y3A2 253 aaKnown RBP12.39□□□□□ -0.43
LDLR-208ENST00000558518 FSBPO95073 299 aa12.39□□□□□ -0.43
LDLR-208ENST00000558518 VPS41P49754 854 aa12.39□□□□□ -0.43
LDLR-208ENST00000558518 HSPA2P54652 639 aa12.39□□□□□ -0.43
LDLR-208ENST00000558518 CYP4A11Q02928 519 aa12.39□□□□□ -0.43
LDLR-208ENST00000558518 TBC1D10BQ4KMP7 808 aaPredicted RBP12.39□□□□□ -0.43
LDLR-208ENST00000558518 ALKBH5Q6P6C2 394 aaKnown RBP12.39□□□□□ -0.43
LDLR-208ENST00000558518 TMBIM4Q9HC24 238 aa12.39□□□□□ -0.43
LDLR-208ENST00000558518 ATP6V0A2Q9Y487 856 aa12.39□□□□□ -0.43
LDLR-208ENST00000558518 STXBP3O00186 592 aa12.38□□□□□ -0.43
LDLR-208ENST00000558518 CAND2O75155 1236 aa12.38□□□□□ -0.43
LDLR-208ENST00000558518 MMEP08473 750 aa12.38□□□□□ -0.43
LDLR-208ENST00000558518 NR2F2P24468 414 aa12.38□□□□□ -0.43
LDLR-208ENST00000558518 STAT3P40763 770 aa12.38□□□□□ -0.43
LDLR-208ENST00000558518 GRB10Q13322 594 aa12.38□□□□□ -0.43
LDLR-208ENST00000558518 GPBP1Q86WP2 473 aa12.38□□□□□ -0.43
LDLR-208ENST00000558518 METTL13Q8N6R0 699 aa12.38□□□□□ -0.43
LDLR-208ENST00000558518 NSUN4Q96CB9 384 aaKnown RBP12.38□□□□□ -0.43
LDLR-208ENST00000558518 STAMBPL1Q96FJ0 436 aa12.38□□□□□ -0.43
LDLR-208ENST00000558518 ADAM33Q9BZ11 813 aa12.38□□□□□ -0.43
LDLR-208ENST00000558518 TMOD4Q9NZQ9 345 aa12.38□□□□□ -0.43
LDLR-208ENST00000558518 KIF4AO95239 1232 aa12.38□□□□□ -0.43
LDLR-208ENST00000558518 GCKP35557 465 aa12.38□□□□□ -0.43
LDLR-208ENST00000558518 FKBP3Q00688 224 aaKnown RBP12.38□□□□□ -0.43
LDLR-208ENST00000558518 IKQ13123 557 aaPredicted RBP12.38□□□□□ -0.43
LDLR-208ENST00000558518 AADACL2Q6P093 401 aa12.38□□□□□ -0.43
LDLR-208ENST00000558518 CCDC63Q8NA47 563 aa12.38□□□□□ -0.43
LDLR-208ENST00000558518 GDAP1Q8TB36 358 aa12.38□□□□□ -0.43
LDLR-208ENST00000558518 IKZF4Q9H2S9 585 aa12.38□□□□□ -0.43
LDLR-208ENST00000558518 GDF3Q9NR23 364 aa12.38□□□□□ -0.43
LDLR-208ENST00000558518 MAD2L2Q9UI95 211 aa12.38□□□□□ -0.43
LDLR-208ENST00000558518 PGRMC1O00264 195 aaKnown RBP12.38□□□□□ -0.43
LDLR-208ENST00000558518 SHBGP04278 402 aa12.38□□□□□ -0.43
LDLR-208ENST00000558518 GNA11P29992 359 aa12.38□□□□□ -0.43
LDLR-208ENST00000558518 TMEM94Q12767 1356 aa12.38□□□□□ -0.43
LDLR-208ENST00000558518 SLC35G1Q2M3R5 365 aa12.38□□□□□ -0.43
LDLR-208ENST00000558518 C1orf167Q5SNV9 1468 aa12.38□□□□□ -0.43
LDLR-208ENST00000558518 SLC30A10Q6XR72 485 aa12.38□□□□□ -0.43
LDLR-208ENST00000558518 ANKS1AQ92625 1134 aa12.38□□□□□ -0.43
LDLR-208ENST00000558518 BRIP1Q9BX63 1249 aa12.38□□□□□ -0.43
LDLR-208ENST00000558518 AZI2Q9H6S1 392 aa12.38□□□□□ -0.43
LDLR-208ENST00000558518 BARHL2Q9NY43 387 aa12.38□□□□□ -0.43
LDLR-208ENST00000558518 USP17L5A8MUK1 530 aa12.37□□□□□ -0.43
LDLR-208ENST00000558518 CHN1P15882 459 aa12.37□□□□□ -0.43
LDLR-208ENST00000558518 CRKLP46109 303 aaKnown RBP12.37□□□□□ -0.43
LDLR-208ENST00000558518 SMTNP53814 917 aa12.37□□□□□ -0.43
LDLR-208ENST00000558518 KCNH2Q12809 1159 aa12.37□□□□□ -0.43
LDLR-208ENST00000558518 COASYQ13057 564 aa12.37□□□□□ -0.43
LDLR-208ENST00000558518 PABPC4Q13310 644 aaKnown RBP eCLIP12.37□□□□□ -0.43
LDLR-208ENST00000558518 UAP1Q16222 522 aaPredicted RBP12.37□□□□□ -0.43
LDLR-208ENST00000558518 NAIF1Q69YI7 327 aaPredicted RBP12.37□□□□□ -0.43
LDLR-208ENST00000558518 KRT25Q7Z3Z0 450 aa12.37□□□□□ -0.43
LDLR-208ENST00000558518 PRCCQ92733 491 aaPredicted RBP12.37□□□□□ -0.43
LDLR-208ENST00000558518 MMTAG2Q9BU76 263 aaKnown RBP12.37□□□□□ -0.43
LDLR-208ENST00000558518 OSGEPQ9NPF4 335 aa12.37□□□□□ -0.43
LDLR-208ENST00000558518 SAMD15Q9P1V8 674 aa12.37□□□□□ -0.43
LDLR-208ENST00000558518 DBR1Q9UK59 544 aaKnown RBP12.37□□□□□ -0.43
LDLR-208ENST00000558518 NR2E1Q9Y466 385 aa12.37□□□□□ -0.43
LDLR-208ENST00000558518 AKAP11Q9UKA4 1901 aa12.37□□□□□ -0.43
LDLR-208ENST00000558518 LRRN2O75325 713 aa12.37□□□□□ -0.43
LDLR-208ENST00000558518 FGFR4P22455 802 aa12.37□□□□□ -0.43
LDLR-208ENST00000558518 SNAP25P60880 206 aa12.37□□□□□ -0.43
LDLR-208ENST00000558518 NAB2Q15742 525 aa12.37□□□□□ -0.43
LDLR-208ENST00000558518 SLC18A3Q16572 532 aa12.37□□□□□ -0.43
LDLR-208ENST00000558518 ANKRD20A8PQ5CZ79 823 aa12.37□□□□□ -0.43
LDLR-208ENST00000558518 CENPPQ6IPU0 288 aa12.37□□□□□ -0.43
LDLR-208ENST00000558518 UNC13DQ70J99 1090 aa12.37□□□□□ -0.43
LDLR-208ENST00000558518 ANKS4BQ8N8V4 417 aa12.37□□□□□ -0.43
LDLR-208ENST00000558518 PRMT1Q99873 361 aaKnown RBP12.37□□□□□ -0.43
LDLR-208ENST00000558518 TSKSQ9UJT2 592 aa12.37□□□□□ -0.43
LDLR-208ENST00000558518 ATRNO75882 1429 aa12.37□□□□□ -0.43
LDLR-208ENST00000558518 POTEB3A0JP26 581 aa12.37□□□□□ -0.43
LDLR-208ENST00000558518 POTECB2RU33 542 aa12.37□□□□□ -0.43
LDLR-208ENST00000558518 RGS16O15492 202 aaPredicted RBP12.37□□□□□ -0.43
LDLR-208ENST00000558518 EPB41P11171 864 aaKnown RBP12.37□□□□□ -0.43
LDLR-208ENST00000558518 GNAQP50148 359 aa12.37□□□□□ -0.43
LDLR-208ENST00000558518 HGSNATQ68CP4 663 aa12.37□□□□□ -0.43
LDLR-208ENST00000558518 POTEBQ6S5H4 581 aa12.37□□□□□ -0.43
LDLR-208ENST00000558518 CCDC197Q8NCU1 140 aa12.37□□□□□ -0.43
LDLR-208ENST00000558518 EYA3Q99504 573 aa12.37□□□□□ -0.43
LDLR-208ENST00000558518 C7orf25Q9BPX7 421 aa12.37□□□□□ -0.43
LDLR-208ENST00000558518 RAB34Q9BZG1 259 aa12.37□□□□□ -0.43
LDLR-208ENST00000558518 BLOC1S4Q9NUP1 217 aa12.37□□□□□ -0.43
LDLR-208ENST00000558518 TBK1Q9UHD2 729 aa12.37□□□□□ -0.43
LDLR-208ENST00000558518 MINPP1Q9UNW1 487 aa12.37□□□□□ -0.43
LDLR-208ENST00000558518 SLURP2P0DP57 97 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms