RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 ABCB6Q9NP58 842 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 ARFGAP3Q9NP61 516 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 DDX41Q9UJV9 622 aaKnown RBP6.17□□□□□ -1.42
LIMA1-215ENST00000552823 PHLPP2Q6ZVD8 1323 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 MYH8P13535 1937 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 GOLGA6L9A6NEM1 432 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 TMEM110-MUSTN1A8MSY1 372 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 GCOM1H8Y6P7 765 aaPredicted RBP6.17□□□□□ -1.42
LIMA1-215ENST00000552823 N4BP1O75113 896 aaKnown RBP6.17□□□□□ -1.42
LIMA1-215ENST00000552823 SASH3O75995 380 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 POLR2MP0CAP2 368 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 HARSP12081 509 aaKnown RBP6.17□□□□□ -1.42
LIMA1-215ENST00000552823 PRPHP41219 470 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 KIF11P52732 1056 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 SF3A3Q12874 501 aaKnown RBP eCLIP6.17□□□□□ -1.42
LIMA1-215ENST00000552823 PRPF4BQ13523 1007 aaKnown RBP6.17□□□□□ -1.42
LIMA1-215ENST00000552823 BMS1Q14692 1282 aaKnown RBP6.17□□□□□ -1.42
LIMA1-215ENST00000552823 KCNB1Q14721 858 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 TMEM132AQ24JP5 1023 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 CCDC93Q567U6 631 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 MIIPQ5JXC2 388 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 NAA35Q5VZE5 725 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 LDHDQ86WU2 507 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 IL31RAQ8NI17 732 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 ERMNQ8TAM6 284 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 RIN2Q8WYP3 895 aaPredicted RBP6.17□□□□□ -1.42
LIMA1-215ENST00000552823 KIFC3Q9BVG8 833 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 GPRC5CQ9NQ84 441 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 ARHGAP20Q9P2F6 1191 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 RABGAP1Q9Y3P9 1069 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 CAPN6Q9Y6Q1 641 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 MYH10P35580 1976 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 IGKV6D-41A0A0C4DH26 115 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 ESYT3A0FGR9 886 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 SPDYE2BA6NHP3 402 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 ZNF263O14978 683 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 KRT86O43790 486 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 SPDYE6P0CI01 402 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 SSTR3P32745 418 aaPredicted RBP6.17□□□□□ -1.42
LIMA1-215ENST00000552823 NPEPPSP55786 919 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 VSNL1P62760 191 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 FKBP3Q00688 224 aaKnown RBP6.17□□□□□ -1.42
LIMA1-215ENST00000552823 KCNH2Q12809 1159 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 MAN2A1Q16706 1144 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 GRIPAP1Q4V328 841 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 ARSHQ5FYA8 562 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 RSBN1LQ6PCB5 846 aaPredicted RBP6.17□□□□□ -1.42
LIMA1-215ENST00000552823 ZNF507Q8TCN5 953 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 COG1Q8WTW3 980 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 SCFD1Q8WVM8 642 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 IFT81Q8WYA0 676 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 CCDC127Q96BQ5 260 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 DNAJC19Q96DA6 116 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 ZNF577Q9BSK1 485 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 WDR11Q9BZH6 1224 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 CENPHQ9H3R5 247 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 PDE11AQ9HCR9 933 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 NYAP2Q9P242 653 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 COL4A3BPQ9Y5P4 624 aa6.17□□□□□ -1.42
LIMA1-215ENST00000552823 LRP5O75197 1615 aa6.16□□□□□ -1.42
LIMA1-215ENST00000552823 CCDC169A6NNP5 214 aa6.16□□□□□ -1.42
LIMA1-215ENST00000552823 CALCAP01258 141 aa6.16□□□□□ -1.42
LIMA1-215ENST00000552823 MYCNP04198 464 aaPredicted RBP6.16□□□□□ -1.42
LIMA1-215ENST00000552823 SNHG28P0DPA3 235 aa6.16□□□□□ -1.42
LIMA1-215ENST00000552823 OAS2P29728 719 aaKnown RBP6.16□□□□□ -1.42
LIMA1-215ENST00000552823 ZBED6P86452 979 aa6.16□□□□□ -1.42
LIMA1-215ENST00000552823 EHHADHQ08426 723 aa6.16□□□□□ -1.42
LIMA1-215ENST00000552823 KLHL30Q0D2K2 578 aa6.16□□□□□ -1.42
LIMA1-215ENST00000552823 LONRF2Q1L5Z9 754 aa6.16□□□□□ -1.42
LIMA1-215ENST00000552823 ODR4Q5SWX8 454 aa6.16□□□□□ -1.42
LIMA1-215ENST00000552823 NBPF12Q5TAG4 269 aaPredicted RBP6.16□□□□□ -1.42
LIMA1-215ENST00000552823 TAF3Q5VWG9 929 aa6.16□□□□□ -1.42
LIMA1-215ENST00000552823 CENPPQ6IPU0 288 aa6.16□□□□□ -1.42
LIMA1-215ENST00000552823 SRGAP1Q7Z6B7 1085 aa6.16□□□□□ -1.42
LIMA1-215ENST00000552823 CERS3Q8IU89 383 aa6.16□□□□□ -1.42
LIMA1-215ENST00000552823 KLHL7Q8IXQ5 586 aa6.16□□□□□ -1.42
LIMA1-215ENST00000552823 FLAD1Q8NFF5 587 aa6.16□□□□□ -1.42
LIMA1-215ENST00000552823 SECISBP2LQ93073 1101 aaKnown RBP6.16□□□□□ -1.42
LIMA1-215ENST00000552823 PKNOX2Q96KN3 472 aa6.16□□□□□ -1.42
LIMA1-215ENST00000552823 WDR18Q9BV38 432 aa6.16□□□□□ -1.42
LIMA1-215ENST00000552823 CAPN11Q9UMQ6 739 aa6.16□□□□□ -1.42
LIMA1-215ENST00000552823 PCDHA13Q9Y5I0 950 aa6.16□□□□□ -1.42
LIMA1-215ENST00000552823 SAR1BQ9Y6B6 198 aa6.16□□□□□ -1.42
LIMA1-215ENST00000552823 EFCAB8A8MWE9 144 aa6.16□□□□□ -1.42
LIMA1-215ENST00000552823 PDE2AO00408 941 aaPredicted RBP6.16□□□□□ -1.42
LIMA1-215ENST00000552823 PLSCR1O15162 318 aa6.16□□□□□ -1.42
LIMA1-215ENST00000552823 GFPT2O94808 682 aa6.16□□□□□ -1.42
LIMA1-215ENST00000552823 FXR2P51116 673 aaKnown RBP eCLIP6.16□□□□□ -1.42
LIMA1-215ENST00000552823 CDR1P51861 262 aa6.16□□□□□ -1.42
LIMA1-215ENST00000552823 R3HDM1Q15032 1099 aaKnown RBP6.16□□□□□ -1.42
LIMA1-215ENST00000552823 TTC19Q6DKK2 380 aaPredicted RBP6.16□□□□□ -1.42
LIMA1-215ENST00000552823 ELOA2Q8IYF1 753 aaPredicted RBP6.16□□□□□ -1.42
LIMA1-215ENST00000552823 VPS18Q9P253 973 aa6.16□□□□□ -1.42
LIMA1-215ENST00000552823 STK17AQ9UEE5 414 aa6.16□□□□□ -1.42
LIMA1-215ENST00000552823 ARMCX3Q9UH62 379 aaPredicted RBP6.16□□□□□ -1.42
LIMA1-215ENST00000552823 ROBO3Q96MS0 1386 aa6.16□□□□□ -1.42
LIMA1-215ENST00000552823 KLRG2A4D1S0 409 aaPredicted RBP6.16□□□□□ -1.42
LIMA1-215ENST00000552823 ARHGEF35A5YM69 484 aa6.16□□□□□ -1.42
LIMA1-215ENST00000552823 LRRC10BA6NIK2 292 aa6.16□□□□□ -1.42
LIMA1-215ENST00000552823 ANKRD65E5RJM6 399 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms