RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 PSMD1Q99460 953 aa14.71□□□□□ -0.05
USP42-206ENST00000479544 DDX23Q9BUQ8 820 aaKnown RBP14.71□□□□□ -0.05
USP42-206ENST00000479544 CELF4Q9BZC1 486 aaKnown RBP14.71□□□□□ -0.05
USP42-206ENST00000479544 TAF1DQ9H5J8 278 aaPredicted RBP14.71□□□□□ -0.05
USP42-206ENST00000479544 EPB41L4AQ9HCS5 686 aaPredicted RBP14.71□□□□□ -0.05
USP42-206ENST00000479544 PNMA2Q9UL42 364 aa14.71□□□□□ -0.05
USP42-206ENST00000479544 DLC1Q96QB1 1528 aa14.71□□□□□ -0.05
USP42-206ENST00000479544 PLEKHG2Q9H7P9 1386 aa14.71□□□□□ -0.05
USP42-206ENST00000479544 A0A087X0B3 334 aa14.71□□□□□ -0.05
USP42-206ENST00000479544 LRRD1A4D1F6 860 aa14.71□□□□□ -0.05
USP42-206ENST00000479544 RAD51CO43502 376 aa14.71□□□□□ -0.05
USP42-206ENST00000479544 HARSP12081 509 aaKnown RBP14.71□□□□□ -0.05
USP42-206ENST00000479544 TBX2Q13207 712 aaPredicted RBP14.71□□□□□ -0.05
USP42-206ENST00000479544 UBE2SQ16763 222 aa14.71□□□□□ -0.05
USP42-206ENST00000479544 ANKRD20A3Q5VUR7 823 aa14.71□□□□□ -0.05
USP42-206ENST00000479544 TPTE2Q6XPS3 522 aa14.71□□□□□ -0.05
USP42-206ENST00000479544 PRPF38AQ8NAV1 312 aaKnown RBP14.71□□□□□ -0.05
USP42-206ENST00000479544 CCDC127Q96BQ5 260 aa14.71□□□□□ -0.05
USP42-206ENST00000479544 AZI2Q9H6S1 392 aa14.71□□□□□ -0.05
USP42-206ENST00000479544 ATG3Q9NT62 314 aa14.71□□□□□ -0.05
USP42-206ENST00000479544 ANKARQ7Z5J8 1434 aa14.71□□□□□ -0.05
USP42-206ENST00000479544 HERVK_113P62684 666 aa14.71□□□□□ -0.06
USP42-206ENST00000479544 EN1Q05925 392 aaPredicted RBP14.71□□□□□ -0.06
USP42-206ENST00000479544 RNF225M0QZC1 329 aaPredicted RBP14.7□□□□□ -0.06
USP42-206ENST00000479544 PRPF6O94906 941 aaKnown RBP14.7□□□□□ -0.06
USP42-206ENST00000479544 ATP5DP30049 168 aa14.7□□□□□ -0.06
USP42-206ENST00000479544 GSTO1P78417 241 aa14.7□□□□□ -0.06
USP42-206ENST00000479544 DR1Q01658 176 aa14.7□□□□□ -0.06
USP42-206ENST00000479544 TRIM51Q9BSJ1 452 aa14.7□□□□□ -0.06
USP42-206ENST00000479544 TMEM60Q9H2L4 133 aa14.7□□□□□ -0.06
USP42-206ENST00000479544 CCDC87Q9NVE4 849 aa14.7□□□□□ -0.06
USP42-206ENST00000479544 GEMIN8Q9NWZ8 242 aaKnown RBP14.7□□□□□ -0.06
USP42-206ENST00000479544 TTI1O43156 1089 aa14.7□□□□□ -0.06
USP42-206ENST00000479544 CALUO43852 315 aaPredicted RBP14.7□□□□□ -0.06
USP42-206ENST00000479544 HLA-DOAP06340 250 aa14.7□□□□□ -0.06
USP42-206ENST00000479544 RBBP5Q15291 538 aaKnown RBP14.7□□□□□ -0.06
USP42-206ENST00000479544 HP1BP3Q5SSJ5 553 aaPredicted RBP14.7□□□□□ -0.06
USP42-206ENST00000479544 MYCBPAPQ8TBZ2 947 aa14.7□□□□□ -0.06
USP42-206ENST00000479544 XDHP47989 1333 aa14.7□□□□□ -0.06
USP42-206ENST00000479544 ATRNO75882 1429 aa14.7□□□□□ -0.06
USP42-206ENST00000479544 TRIM37O94972 964 aa14.7□□□□□ -0.06
USP42-206ENST00000479544 R3HDM1Q15032 1099 aaKnown RBP14.7□□□□□ -0.06
USP42-206ENST00000479544 PPM1KQ8N3J5 372 aa14.7□□□□□ -0.06
USP42-206ENST00000479544 ZNF622Q969S3 477 aaKnown RBP eCLIP14.7□□□□□ -0.061e-6■■□□□ 14.2
USP42-206ENST00000479544 NOP53Q9NZM5 478 aaKnown RBP14.7□□□□□ -0.06
USP42-206ENST00000479544 RNF14Q9UBS8 474 aa14.7□□□□□ -0.06
USP42-206ENST00000479544 DDX25Q9UHL0 483 aaKnown RBP14.7□□□□□ -0.06
USP42-206ENST00000479544 STK36Q9NRP7 1315 aa14.7□□□□□ -0.06
USP42-206ENST00000479544 CPDO75976 1380 aa14.7□□□□□ -0.06
USP42-206ENST00000479544 COL15A1P39059 1388 aa14.7□□□□□ -0.06
USP42-206ENST00000479544 PALLDQ8WX93 1383 aa14.7□□□□□ -0.06
USP42-206ENST00000479544 KLRC1P26715 233 aa14.69□□□□□ -0.06
USP42-206ENST00000479544 PMS1P54277 932 aaKnown RBP14.69□□□□□ -0.06
USP42-206ENST00000479544 SLC20A2Q08357 652 aa14.69□□□□□ -0.06
USP42-206ENST00000479544 TNIP1Q15025 636 aa14.69□□□□□ -0.06
USP42-206ENST00000479544 PTGISQ16647 500 aa14.69□□□□□ -0.06
USP42-206ENST00000479544 APBB1IPQ7Z5R6 666 aaPredicted RBP14.69□□□□□ -0.06
USP42-206ENST00000479544 SAAL1Q96ER3 474 aa14.69□□□□□ -0.06
USP42-206ENST00000479544 SEC16BQ96JE7 1060 aa14.69□□□□□ -0.06
USP42-206ENST00000479544 CDCA7Q9BWT1 371 aaPredicted RBP14.69□□□□□ -0.06
USP42-206ENST00000479544 FAM114A2Q9NRY5 505 aa14.69□□□□□ -0.06
USP42-206ENST00000479544 EMILIN3Q9NT22 766 aa14.69□□□□□ -0.06
USP42-206ENST00000479544 MYO5BQ9ULV0 1848 aa14.69□□□□□ -0.06
USP42-206ENST00000479544 EVI5O60447 810 aa14.69□□□□□ -0.06
USP42-206ENST00000479544 SYF2O95926 243 aaKnown RBP14.69□□□□□ -0.06
USP42-206ENST00000479544 GLI1P08151 1106 aa14.69□□□□□ -0.06
USP42-206ENST00000479544 TCP10Q12799 353 aa14.69□□□□□ -0.06
USP42-206ENST00000479544 ZYXQ15942 572 aaKnown RBP14.69□□□□□ -0.06
USP42-206ENST00000479544 TSEN2Q8NCE0 465 aaKnown RBP14.69□□□□□ -0.06
USP42-206ENST00000479544 SHPRHQ149N8 1683 aa14.69□□□□□ -0.06
USP42-206ENST00000479544 FAM153BP0C7A2 387 aa14.69□□□□□ -0.06
USP42-206ENST00000479544 SRGNP10124 158 aa14.69□□□□□ -0.06
USP42-206ENST00000479544 FAM153CQ494X1 144 aa14.69□□□□□ -0.06
USP42-206ENST00000479544 KAZNQ674X7 775 aa14.69□□□□□ -0.06
USP42-206ENST00000479544 IQCDQ96DY2 449 aa14.69□□□□□ -0.06
USP42-206ENST00000479544 CHMP6Q96FZ7 201 aa14.69□□□□□ -0.06
USP42-206ENST00000479544 GBP5Q96PP8 586 aa14.69□□□□□ -0.06
USP42-206ENST00000479544 SH2D4AQ9H788 454 aa14.69□□□□□ -0.06
USP42-206ENST00000479544 TMEM260Q9NX78 707 aa14.69□□□□□ -0.06
USP42-206ENST00000479544 FAM153AQ9UHL3 310 aa14.69□□□□□ -0.06
USP42-206ENST00000479544 A0A1W2PQC6 194 aa14.69□□□□□ -0.06
USP42-206ENST00000479544 BIRC3Q13489 604 aa14.69□□□□□ -0.06
USP42-206ENST00000479544 FYB2Q5VWT5 728 aa14.69□□□□□ -0.06
USP42-206ENST00000479544 ARL6IP4Q66PJ3 421 aaKnown RBP14.69□□□□□ -0.06
USP42-206ENST00000479544 CEP63Q96MT8 703 aa14.69□□□□□ -0.06
USP42-206ENST00000479544 VCXQ9H320 206 aa14.69□□□□□ -0.06
USP42-206ENST00000479544 GCNT4Q9P109 453 aa14.69□□□□□ -0.06
USP42-206ENST00000479544 HDAC9Q9UKV0 1011 aa14.69□□□□□ -0.06
USP42-206ENST00000479544 ACTN1P12814 892 aa14.68□□□□□ -0.06
USP42-206ENST00000479544 PRDX5P30044 214 aa14.68□□□□□ -0.06
USP42-206ENST00000479544 HAUS3Q68CZ6 603 aa14.68□□□□□ -0.06
USP42-206ENST00000479544 SLF2Q8IX21 1173 aa14.68□□□□□ -0.06
USP42-206ENST00000479544 CEMIPQ8WUJ3 1361 aa14.68□□□□□ -0.06
USP42-206ENST00000479544 GAS8O95995 478 aa14.68□□□□□ -0.06
USP42-206ENST00000479544 NSMFQ6X4W1 530 aa14.68□□□□□ -0.06
USP42-206ENST00000479544 PIGBQ92521 554 aa14.68□□□□□ -0.06
USP42-206ENST00000479544 TRIM9Q9C026 710 aa14.68□□□□□ -0.06
USP42-206ENST00000479544 SYNCQ9H7C4 482 aa14.68□□□□□ -0.06
USP42-206ENST00000479544 PSTPIP2Q9H939 334 aa14.68□□□□□ -0.06
USP42-206ENST00000479544 STK32BQ9NY57 414 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms