RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 HINFPQ9BQA5 517 aa15.97■□□□□ 0.15
HDAC6-220ENST00000477528 ASIC3Q9UHC3 531 aa15.97■□□□□ 0.15
HDAC6-220ENST00000477528 FTCDO95954 541 aa15.97■□□□□ 0.15
HDAC6-220ENST00000477528 SRGNP10124 158 aa15.97■□□□□ 0.15
HDAC6-220ENST00000477528 LIG4P49917 911 aa15.97■□□□□ 0.15
HDAC6-220ENST00000477528 TTBK2Q6IQ55 1244 aa15.97■□□□□ 0.15
HDAC6-220ENST00000477528 HHIPL2Q6UWX4 724 aa15.97■□□□□ 0.15
HDAC6-220ENST00000477528 C3orf67Q6ZVT6 689 aa15.97■□□□□ 0.15
HDAC6-220ENST00000477528 EDEM3Q9BZQ6 932 aa15.97■□□□□ 0.15
HDAC6-220ENST00000477528 RASSF4Q9H2L5 321 aa15.97■□□□□ 0.15
HDAC6-220ENST00000477528 MORC2Q9Y6X9 1032 aaPredicted RBP15.97■□□□□ 0.15
HDAC6-220ENST00000477528 PALM3A6NDB9 673 aaPredicted RBP15.97■□□□□ 0.15
HDAC6-220ENST00000477528 PDE6CP51160 858 aa15.97■□□□□ 0.15
HDAC6-220ENST00000477528 USP14P54578 494 aa15.97■□□□□ 0.15
HDAC6-220ENST00000477528 NBPF3Q9H094 633 aa15.97■□□□□ 0.15
HDAC6-220ENST00000477528 C1orf112Q9NSG2 853 aa15.97■□□□□ 0.15
HDAC6-220ENST00000477528 AOC3Q16853 763 aa15.97■□□□□ 0.15
HDAC6-220ENST00000477528 KRT71Q3SY84 523 aa15.97■□□□□ 0.15
HDAC6-220ENST00000477528 HEXIM1O94992 359 aaKnown RBP15.96■□□□□ 0.15
HDAC6-220ENST00000477528 CEP85LQ5SZL2 805 aa15.96■□□□□ 0.15
HDAC6-220ENST00000477528 ATP6V0A1Q93050 837 aa15.96■□□□□ 0.15
HDAC6-220ENST00000477528 PBKQ96KB5 322 aa15.96■□□□□ 0.15
HDAC6-220ENST00000477528 PAIP2Q9BPZ3 127 aaKnown RBP15.96■□□□□ 0.15
HDAC6-220ENST00000477528 SAMD15Q9P1V8 674 aa15.96■□□□□ 0.15
HDAC6-220ENST00000477528 FEZ2Q9UHY8 353 aaPredicted RBP15.96■□□□□ 0.15
HDAC6-220ENST00000477528 GFPT2O94808 682 aa15.96■□□□□ 0.15
HDAC6-220ENST00000477528 ASNSP08243 561 aa15.96■□□□□ 0.15
HDAC6-220ENST00000477528 STK4Q13043 487 aa15.96■□□□□ 0.15
HDAC6-220ENST00000477528 ALCAMQ13740 583 aa15.96■□□□□ 0.15
HDAC6-220ENST00000477528 RAD9BQ6WBX8 426 aa15.96■□□□□ 0.15
HDAC6-220ENST00000477528 DPH6Q7L8W6 267 aa15.96■□□□□ 0.15
HDAC6-220ENST00000477528 FAM204AQ9H8W3 233 aa15.96■□□□□ 0.15
HDAC6-220ENST00000477528 PLCB1Q9NQ66 1216 aa15.96■□□□□ 0.15
HDAC6-220ENST00000477528 IBSPP21815 317 aaPredicted RBP15.96■□□□□ 0.15
HDAC6-220ENST00000477528 MAP3K9P80192 1104 aa15.96■□□□□ 0.15
HDAC6-220ENST00000477528 FAM83BQ5T0W9 1011 aa15.96■□□□□ 0.15
HDAC6-220ENST00000477528 MIGA2Q7L4E1 593 aa15.96■□□□□ 0.15
HDAC6-220ENST00000477528 TXNRD3Q86VQ6 643 aa15.96■□□□□ 0.15
HDAC6-220ENST00000477528 IRX2Q9BZI1 471 aaPredicted RBP15.96■□□□□ 0.15
HDAC6-220ENST00000477528 KCNK9Q9NPC2 374 aa15.96■□□□□ 0.15
HDAC6-220ENST00000477528 KIF13AQ9H1H9 1805 aa15.96■□□□□ 0.15
HDAC6-220ENST00000477528 POTEFA5A3E0 1075 aa15.96■□□□□ 0.14
HDAC6-220ENST00000477528 PGRMC1O00264 195 aaKnown RBP15.96■□□□□ 0.14
HDAC6-220ENST00000477528 GYPCP04921 128 aa15.96■□□□□ 0.14
HDAC6-220ENST00000477528 POTEIP0CG38 1075 aa15.96■□□□□ 0.14
HDAC6-220ENST00000477528 MFAP3P55082 362 aa15.96■□□□□ 0.14
HDAC6-220ENST00000477528 POTEGQ6S5H5 508 aa15.96■□□□□ 0.14
HDAC6-220ENST00000477528 POTEEQ6S8J3 1075 aa15.96■□□□□ 0.14
HDAC6-220ENST00000477528 TTLL6Q8N841 843 aa15.96■□□□□ 0.14
HDAC6-220ENST00000477528 FAN1Q9Y2M0 1017 aa15.96■□□□□ 0.14
HDAC6-220ENST00000477528 KCNH2Q12809 1159 aa15.95■□□□□ 0.14
HDAC6-220ENST00000477528 PRKG1Q13976 671 aa15.95■□□□□ 0.14
HDAC6-220ENST00000477528 KNOP1Q1ED39 458 aaKnown RBP15.95■□□□□ 0.14
HDAC6-220ENST00000477528 ALKBH5Q6P6C2 394 aaKnown RBP15.95■□□□□ 0.14
HDAC6-220ENST00000477528 NR3C1P04150 777 aa15.95■□□□□ 0.14
HDAC6-220ENST00000477528 PIGOQ8TEQ8 1089 aa15.95■□□□□ 0.14
HDAC6-220ENST00000477528 EXOC4Q96A65 974 aa15.95■□□□□ 0.14
HDAC6-220ENST00000477528 EPB41L5Q9HCM4 733 aa15.95■□□□□ 0.14
HDAC6-220ENST00000477528 C21orf2O43822 256 aa15.95■□□□□ 0.14
HDAC6-220ENST00000477528 DLATP10515 647 aaKnown RBP15.95■□□□□ 0.14
HDAC6-220ENST00000477528 RXRBP28702 533 aa15.95■□□□□ 0.14
HDAC6-220ENST00000477528 TERF2Q15554 542 aa15.95■□□□□ 0.14
HDAC6-220ENST00000477528 CDC42EP5Q6NZY7 148 aa15.95■□□□□ 0.14
HDAC6-220ENST00000477528 POMGNT1Q8WZA1 660 aa15.95■□□□□ 0.14
HDAC6-220ENST00000477528 CHP1Q99653 195 aa15.95■□□□□ 0.14
HDAC6-220ENST00000477528 ATRNO75882 1429 aa15.95■□□□□ 0.14
HDAC6-220ENST00000477528 FAM170AA1A519 330 aa15.94■□□□□ 0.14
HDAC6-220ENST00000477528 SRGAP2O75044 1071 aa15.94■□□□□ 0.14
HDAC6-220ENST00000477528 GAS8O95995 478 aa15.94■□□□□ 0.14
HDAC6-220ENST00000477528 PRELPP51888 382 aa15.94■□□□□ 0.14
HDAC6-220ENST00000477528 GNGT1P63211 74 aa15.94■□□□□ 0.14
HDAC6-220ENST00000477528 DENND2CQ68D51 928 aa15.94■□□□□ 0.14
HDAC6-220ENST00000477528 NT5C1BQ96P26 610 aa15.94■□□□□ 0.14
HDAC6-220ENST00000477528 NYAP2Q9P242 653 aa15.94■□□□□ 0.14
HDAC6-220ENST00000477528 LMO7Q8WWI1 1683 aa15.94■□□□□ 0.14
HDAC6-220ENST00000477528 RNF40O75150 1001 aa15.94■□□□□ 0.14
HDAC6-220ENST00000477528 CD44P16070 742 aaKnown RBP15.94■□□□□ 0.14
HDAC6-220ENST00000477528 STRIP1Q5VSL9 837 aa15.94■□□□□ 0.14
HDAC6-220ENST00000477528 DCUN1D2Q6PH85 259 aa15.94■□□□□ 0.14
HDAC6-220ENST00000477528 RNF10Q8N5U6 811 aaKnown RBP15.94■□□□□ 0.14
HDAC6-220ENST00000477528 CAPS2Q9BXY5 557 aa15.94■□□□□ 0.14
HDAC6-220ENST00000477528 TYW1Q9NV66 732 aaKnown RBP15.94■□□□□ 0.14
HDAC6-220ENST00000477528 STAT3P40763 770 aa15.94■□□□□ 0.14
HDAC6-220ENST00000477528 CLEC10AQ8IUN9 316 aa15.94■□□□□ 0.14
HDAC6-220ENST00000477528 HPS3Q969F9 1004 aa15.94■□□□□ 0.14
HDAC6-220ENST00000477528 USTQ9Y2C2 406 aa15.94■□□□□ 0.14
HDAC6-220ENST00000477528 SFI1A8K8P3 1242 aa15.94■□□□□ 0.14
HDAC6-220ENST00000477528 FXR2P51116 673 aaKnown RBP eCLIP15.94■□□□□ 0.144e-6■■■□□ 18.2
HDAC6-220ENST00000477528 MNAT1P51948 309 aa15.94■□□□□ 0.14
HDAC6-220ENST00000477528 TTC31Q49AM3 519 aaPredicted RBP15.94■□□□□ 0.14
HDAC6-220ENST00000477528 REXO1L1PQ8IX06 675 aa15.94■□□□□ 0.14
HDAC6-220ENST00000477528 DPH5Q9H2P9 285 aa15.94■□□□□ 0.14
HDAC6-220ENST00000477528 HERC5Q9UII4 1024 aaKnown RBP15.94■□□□□ 0.14
HDAC6-220ENST00000477528 AGTPBP1Q9UPW5 1226 aa15.94■□□□□ 0.14
HDAC6-220ENST00000477528 BCS1LQ9Y276 419 aa15.94■□□□□ 0.14
HDAC6-220ENST00000477528 MYMKA6NI61 221 aa15.93■□□□□ 0.14
HDAC6-220ENST00000477528 HNRNPDLO14979 420 aaKnown RBP15.93■□□□□ 0.14
HDAC6-220ENST00000477528 SLC26A4O43511 780 aa15.93■□□□□ 0.14
HDAC6-220ENST00000477528 PCIF1Q9H4Z3 704 aa15.93■□□□□ 0.14
HDAC6-220ENST00000477528 RABEP2Q9H5N1 569 aa15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms