RNA–Protein interactions for RNA: ENST00000361654.8

CLIP1-203, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 5,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-203ENST00000361654 HAUS4Q9H6D7 363 aa11.83□□□□□ -0.52
CLIP1-203ENST00000361654 PLEKHG2Q9H7P9 1386 aa11.83□□□□□ -0.52
CLIP1-203ENST00000361654 ADD2P35612 726 aa11.83□□□□□ -0.52
CLIP1-203ENST00000361654 NOP14P78316 857 aaKnown RBP11.83□□□□□ -0.52
CLIP1-203ENST00000361654 FKBP3Q00688 224 aaKnown RBP11.83□□□□□ -0.52
CLIP1-203ENST00000361654 KRT76Q01546 638 aa11.83□□□□□ -0.52
CLIP1-203ENST00000361654 DARS2Q6PI48 645 aaKnown RBP11.83□□□□□ -0.52
CLIP1-203ENST00000361654 TTC39CQ8N584 583 aa11.83□□□□□ -0.52
CLIP1-203ENST00000361654 FGD4Q96M96 766 aa11.83□□□□□ -0.52
CLIP1-203ENST00000361654 GSDMAQ96QA5 445 aa11.83□□□□□ -0.52
CLIP1-203ENST00000361654 EFCAB6Q5THR3 1501 aa11.83□□□□□ -0.52
CLIP1-203ENST00000361654 FAM135BQ49AJ0 1406 aa11.83□□□□□ -0.52
CLIP1-203ENST00000361654 ERBB3P21860 1342 aa11.83□□□□□ -0.52
CLIP1-203ENST00000361654 CFAP74Q9C0B2 1584 aa11.83□□□□□ -0.52
CLIP1-203ENST00000361654 RWDD4Q6NW29 188 aaKnown RBP11.83□□□□□ -0.52
CLIP1-203ENST00000361654 KCNV1Q6PIU1 500 aa11.83□□□□□ -0.52
CLIP1-203ENST00000361654 TAB3Q8N5C8 712 aaPredicted RBP11.83□□□□□ -0.52
CLIP1-203ENST00000361654 DDX50Q9BQ39 737 aaKnown RBP11.83□□□□□ -0.52
CLIP1-203ENST00000361654 CARD6Q9BX69 1037 aa11.83□□□□□ -0.52
CLIP1-203ENST00000361654 CALN1Q9BXU9 219 aa11.83□□□□□ -0.52
CLIP1-203ENST00000361654 PCIF1Q9H4Z3 704 aa11.83□□□□□ -0.52
CLIP1-203ENST00000361654 ABCF3Q9NUQ8 709 aa11.83□□□□□ -0.52
CLIP1-203ENST00000361654 HGSO14964 777 aaPredicted RBP11.83□□□□□ -0.52
CLIP1-203ENST00000361654 EVI5O60447 810 aa11.83□□□□□ -0.52
CLIP1-203ENST00000361654 SASH1O94885 1247 aa11.83□□□□□ -0.52
CLIP1-203ENST00000361654 PSMD2Q13200 908 aa11.83□□□□□ -0.52
CLIP1-203ENST00000361654 KLC3Q6P597 504 aa11.83□□□□□ -0.52
CLIP1-203ENST00000361654 CAPN12Q6ZSI9 719 aa11.83□□□□□ -0.52
CLIP1-203ENST00000361654 EFHBQ8N7U6 833 aa11.83□□□□□ -0.52
CLIP1-203ENST00000361654 CCDC124Q96CT7 223 aaKnown RBP11.83□□□□□ -0.52
CLIP1-203ENST00000361654 ADCY9O60503 1353 aa11.82□□□□□ -0.52
CLIP1-203ENST00000361654 CARMIL3Q8ND23 1372 aa11.82□□□□□ -0.52
CLIP1-203ENST00000361654 ABCB11O95342 1321 aa11.82□□□□□ -0.52
CLIP1-203ENST00000361654 MYOM2P54296 1465 aa11.82□□□□□ -0.52
CLIP1-203ENST00000361654 TRAPPC3O43617 180 aa11.82□□□□□ -0.52
CLIP1-203ENST00000361654 CYP2E1P05181 493 aaPredicted RBP11.82□□□□□ -0.52
CLIP1-203ENST00000361654 PAMP19021 973 aa11.82□□□□□ -0.52
CLIP1-203ENST00000361654 GABPB1Q06547 395 aaPredicted RBP11.82□□□□□ -0.52
CLIP1-203ENST00000361654 TAF11Q15544 211 aa11.82□□□□□ -0.52
CLIP1-203ENST00000361654 ME3Q16798 604 aa11.82□□□□□ -0.52
CLIP1-203ENST00000361654 THNSL1Q8IYQ7 743 aa11.82□□□□□ -0.52
CLIP1-203ENST00000361654 MGARPQ8TDB4 240 aa11.82□□□□□ -0.52
CLIP1-203ENST00000361654 TRIM62Q9BVG3 475 aa11.82□□□□□ -0.52
CLIP1-203ENST00000361654 CD58P19256 250 aa11.82□□□□□ -0.52
CLIP1-203ENST00000361654 INPP1P49441 399 aa11.82□□□□□ -0.52
CLIP1-203ENST00000361654 CNOT6LQ96LI5 555 aaKnown RBP11.82□□□□□ -0.52
CLIP1-203ENST00000361654 RNF146Q9NTX7 359 aa11.82□□□□□ -0.52
CLIP1-203ENST00000361654 SUCLA2Q9P2R7 463 aaPredicted RBP11.82□□□□□ -0.52
CLIP1-203ENST00000361654 HACL1Q9UJ83 578 aa11.82□□□□□ -0.52
CLIP1-203ENST00000361654 UGGT1Q9NYU2 1555 aa11.82□□□□□ -0.52
CLIP1-203ENST00000361654 KDM5DQ9BY66 1539 aa11.82□□□□□ -0.52
CLIP1-203ENST00000361654 SART1O43290 800 aaKnown RBP11.82□□□□□ -0.52
CLIP1-203ENST00000361654 HSPA6P17066 643 aa11.82□□□□□ -0.52
CLIP1-203ENST00000361654 ARHGAP25P42331 645 aa11.82□□□□□ -0.52
CLIP1-203ENST00000361654 GPSM2P81274 684 aa11.82□□□□□ -0.52
CLIP1-203ENST00000361654 MECOMQ03112 1051 aa11.82□□□□□ -0.52
CLIP1-203ENST00000361654 MTMR1Q13613 665 aa11.82□□□□□ -0.52
CLIP1-203ENST00000361654 TRIM45Q9H8W5 580 aaPredicted RBP11.82□□□□□ -0.52
CLIP1-203ENST00000361654 TMEM63CQ9P1W3 806 aa11.82□□□□□ -0.52
CLIP1-203ENST00000361654 ORC6Q9Y5N6 252 aa11.82□□□□□ -0.52
CLIP1-203ENST00000361654 TCOF1Q13428 1488 aaKnown RBP11.82□□□□□ -0.52
CLIP1-203ENST00000361654 PAPOLAP51003 745 aaKnown RBP11.82□□□□□ -0.52
CLIP1-203ENST00000361654 ZNF157P51786 506 aaPredicted RBP11.82□□□□□ -0.52
CLIP1-203ENST00000361654 GTF3C2Q8WUA4 911 aaPredicted RBP11.82□□□□□ -0.52
CLIP1-203ENST00000361654 USP17L15C9J2P7 530 aa11.81□□□□□ -0.52
CLIP1-203ENST00000361654 USP17L13C9JLJ4 530 aa11.81□□□□□ -0.52
CLIP1-203ENST00000361654 USP17L11C9JVI0 530 aa11.81□□□□□ -0.52
CLIP1-203ENST00000361654 USP17L18D6R9N7 530 aa11.81□□□□□ -0.52
CLIP1-203ENST00000361654 USP17L22D6RA61 530 aa11.81□□□□□ -0.52
CLIP1-203ENST00000361654 USP17L17D6RBQ6 530 aa11.81□□□□□ -0.52
CLIP1-203ENST00000361654 USP17L19D6RCP7 530 aa11.81□□□□□ -0.52
CLIP1-203ENST00000361654 USP17L20D6RJB6 530 aa11.81□□□□□ -0.52
CLIP1-203ENST00000361654 CLDN3O15551 220 aa11.81□□□□□ -0.52
CLIP1-203ENST00000361654 USP17L24Q0WX57 530 aa11.81□□□□□ -0.52
CLIP1-203ENST00000361654 TBCCQ15814 346 aa11.81□□□□□ -0.52
CLIP1-203ENST00000361654 POTEDQ86YR6 584 aa11.81□□□□□ -0.52
CLIP1-203ENST00000361654 PPP1R12CQ9BZL4 782 aa11.81□□□□□ -0.52
CLIP1-203ENST00000361654 Q9H521 79 aa11.81□□□□□ -0.52
CLIP1-203ENST00000361654 ACAD9Q9H845 621 aa11.81□□□□□ -0.52
CLIP1-203ENST00000361654 FAN1Q9Y2M0 1017 aa11.81□□□□□ -0.52
CLIP1-203ENST00000361654 ARAP3Q8WWN8 1544 aa11.81□□□□□ -0.52
CLIP1-203ENST00000361654 EEF1GP26641 437 aaKnown RBP11.81□□□□□ -0.52
CLIP1-203ENST00000361654 CDC42EP1Q00587 391 aa11.81□□□□□ -0.52
CLIP1-203ENST00000361654 TXNRD1Q16881 649 aa11.81□□□□□ -0.52
CLIP1-203ENST00000361654 PARK7Q99497 189 aaKnown RBP11.81□□□□□ -0.52
CLIP1-203ENST00000361654 LCMT1Q9UIC8 334 aa11.81□□□□□ -0.52
CLIP1-203ENST00000361654 UBN2Q6ZU65 1347 aa11.81□□□□□ -0.52
CLIP1-203ENST00000361654 BUB1O43683 1085 aa11.81□□□□□ -0.52
CLIP1-203ENST00000361654 TMCC1O94876 653 aa11.81□□□□□ -0.52
CLIP1-203ENST00000361654 CYBBP04839 570 aa11.81□□□□□ -0.52
CLIP1-203ENST00000361654 CPB1P15086 417 aa11.81□□□□□ -0.52
CLIP1-203ENST00000361654 PDIA3P30101 505 aaKnown RBP11.81□□□□□ -0.52
CLIP1-203ENST00000361654 SPP2Q13103 211 aa11.81□□□□□ -0.52
CLIP1-203ENST00000361654 APOA5Q6Q788 366 aa11.81□□□□□ -0.52
CLIP1-203ENST00000361654 TADA2BQ86TJ2 420 aa11.81□□□□□ -0.52
CLIP1-203ENST00000361654 DGKHQ86XP1 1220 aa11.81□□□□□ -0.52
CLIP1-203ENST00000361654 RAB42Q8N4Z0 105 aa11.81□□□□□ -0.52
CLIP1-203ENST00000361654 GJD4Q96KN9 370 aaPredicted RBP11.81□□□□□ -0.52
CLIP1-203ENST00000361654 TDRD3Q9H7E2 651 aaKnown RBP11.81□□□□□ -0.52
CLIP1-203ENST00000361654 SPATA31E1Q6ZUB1 1445 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms