RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 CDH23Q9H251 3354 aa11.73□□□□□ -0.53
VPS11-208ENST00000621676 TFRCP02786 760 aaKnown RBP11.73□□□□□ -0.53
VPS11-208ENST00000621676 PNMA6AP0CW24 399 aaPredicted RBP11.73□□□□□ -0.53
VPS11-208ENST00000621676 MYBP10242 640 aa11.73□□□□□ -0.53
VPS11-208ENST00000621676 RPS12P25398 132 aaKnown RBP11.73□□□□□ -0.53
VPS11-208ENST00000621676 MRPS9P82933 396 aaKnown RBP11.73□□□□□ -0.53
VPS11-208ENST00000621676 KRT31Q15323 416 aa11.73□□□□□ -0.53
VPS11-208ENST00000621676 ARL6IP4Q66PJ3 421 aaKnown RBP11.73□□□□□ -0.53
VPS11-208ENST00000621676 KANK3Q6NY19 840 aa11.73□□□□□ -0.53
VPS11-208ENST00000621676 KIAA0895Q8NCT3 520 aa11.73□□□□□ -0.53
VPS11-208ENST00000621676 ARAP2Q8WZ64 1704 aa11.73□□□□□ -0.53
VPS11-208ENST00000621676 KCNJ18B7U540 433 aa11.72□□□□□ -0.53
VPS11-208ENST00000621676 KCNJ12Q14500 433 aa11.72□□□□□ -0.53
VPS11-208ENST00000621676 CCDC40Q4G0X9 1142 aa11.72□□□□□ -0.53
VPS11-208ENST00000621676 SEZ6Q53EL9 994 aa11.72□□□□□ -0.53
VPS11-208ENST00000621676 SWSAP1Q6NVH7 229 aa11.72□□□□□ -0.53
VPS11-208ENST00000621676 APOBEC3FQ8IUX4 373 aaKnown RBP11.72□□□□□ -0.53
VPS11-208ENST00000621676 LRRC8AQ8IWT6 810 aa11.72□□□□□ -0.53
VPS11-208ENST00000621676 MLKLQ8NB16 471 aa11.72□□□□□ -0.53
VPS11-208ENST00000621676 DRC1Q96MC2 740 aa11.72□□□□□ -0.53
VPS11-208ENST00000621676 MAGEC2Q9UBF1 373 aaPredicted RBP11.72□□□□□ -0.53
VPS11-208ENST00000621676 SNCAIPQ9Y6H5 919 aa11.72□□□□□ -0.53
VPS11-208ENST00000621676 SOWAHDA6NJG2 315 aa11.72□□□□□ -0.53
VPS11-208ENST00000621676 PSMA7O14818 248 aa11.72□□□□□ -0.53
VPS11-208ENST00000621676 RBL2Q08999 1139 aa11.72□□□□□ -0.53
VPS11-208ENST00000621676 GALNT17Q6IS24 598 aa11.72□□□□□ -0.53
VPS11-208ENST00000621676 REEP2Q9BRK0 252 aa11.72□□□□□ -0.53
VPS11-208ENST00000621676 LXNQ9BS40 222 aa11.72□□□□□ -0.53
VPS11-208ENST00000621676 A1CFQ9NQ94 594 aaKnown RBP11.72□□□□□ -0.53
VPS11-208ENST00000621676 PGAP2Q9UHJ9 254 aa11.72□□□□□ -0.53
VPS11-208ENST00000621676 NR3C2P08235 984 aa11.71□□□□□ -0.53
VPS11-208ENST00000621676 UGCGQ16739 394 aa11.71□□□□□ -0.53
VPS11-208ENST00000621676 FAM102BQ5T8I3 360 aa11.71□□□□□ -0.53
VPS11-208ENST00000621676 ZBED3Q96IU2 234 aaPredicted RBP11.71□□□□□ -0.53
VPS11-208ENST00000621676 TIGD1Q96MW7 591 aa11.71□□□□□ -0.53
VPS11-208ENST00000621676 PORCNQ9H237 461 aa11.71□□□□□ -0.53
VPS11-208ENST00000621676 RABGAP1Q9Y3P9 1069 aa11.71□□□□□ -0.53
VPS11-208ENST00000621676 ATRNL1Q5VV63 1379 aa11.71□□□□□ -0.53
VPS11-208ENST00000621676 TBC1D8BQ0IIM8 1120 aa11.71□□□□□ -0.53
VPS11-208ENST00000621676 LY6KQ17RY6 165 aa11.71□□□□□ -0.53
VPS11-208ENST00000621676 PPFIBP1Q86W92 1011 aa11.71□□□□□ -0.53
VPS11-208ENST00000621676 SYCP3Q8IZU3 236 aa11.71□□□□□ -0.53
VPS11-208ENST00000621676 CCDC47Q96A33 483 aaKnown RBP11.71□□□□□ -0.53
VPS11-208ENST00000621676 LENG9Q96B70 501 aa11.71□□□□□ -0.53
VPS11-208ENST00000621676 PSMB7Q99436 277 aa11.71□□□□□ -0.53
VPS11-208ENST00000621676 RNF216Q9NWF9 866 aaPredicted RBP11.71□□□□□ -0.53
VPS11-208ENST00000621676 ECM29Q5VYK3 1845 aa11.71□□□□□ -0.53
VPS11-208ENST00000621676 LRRN2O75325 713 aa11.71□□□□□ -0.54
VPS11-208ENST00000621676 ABL1P00519 1130 aa11.71□□□□□ -0.54
VPS11-208ENST00000621676 ICAM1P05362 532 aa11.71□□□□□ -0.54
VPS11-208ENST00000621676 TRIM21P19474 475 aaKnown RBP11.71□□□□□ -0.54
VPS11-208ENST00000621676 STIM1Q13586 685 aa11.71□□□□□ -0.54
VPS11-208ENST00000621676 MTERF2Q49AM1 385 aa11.71□□□□□ -0.54
VPS11-208ENST00000621676 XKR9Q5GH70 373 aa11.71□□□□□ -0.54
VPS11-208ENST00000621676 PRAMEF19Q5SWL8 479 aa11.71□□□□□ -0.54
VPS11-208ENST00000621676 RAD54LQ92698 747 aa11.71□□□□□ -0.54
VPS11-208ENST00000621676 FAM212AQ96EL1 285 aa11.71□□□□□ -0.54
VPS11-208ENST00000621676 GSDMAQ96QA5 445 aa11.71□□□□□ -0.54
VPS11-208ENST00000621676 NOC4LQ9BVI4 516 aaKnown RBP11.71□□□□□ -0.54
VPS11-208ENST00000621676 PLEKHA4Q9H4M7 779 aa11.71□□□□□ -0.54
VPS11-208ENST00000621676 TAF1DQ9H5J8 278 aaPredicted RBP11.71□□□□□ -0.54
VPS11-208ENST00000621676 SPDYE16A6NNV3 312 aaPredicted RBP11.7□□□□□ -0.54
VPS11-208ENST00000621676 WDR46O15213 610 aaKnown RBP11.7□□□□□ -0.54
VPS11-208ENST00000621676 TBCAO75347 108 aaKnown RBP11.7□□□□□ -0.54
VPS11-208ENST00000621676 FAM13AO94988 1023 aa11.7□□□□□ -0.54
VPS11-208ENST00000621676 GJB1P08034 283 aa11.7□□□□□ -0.54
VPS11-208ENST00000621676 SARSP49591 514 aaKnown RBP11.7□□□□□ -0.54
VPS11-208ENST00000621676 CLK2P49760 499 aaKnown RBP11.7□□□□□ -0.54
VPS11-208ENST00000621676 COASYQ13057 564 aa11.7□□□□□ -0.54
VPS11-208ENST00000621676 ITGB3BPQ13352 177 aaPredicted RBP11.7□□□□□ -0.54
VPS11-208ENST00000621676 FAM26FQ5R3K3 315 aa11.7□□□□□ -0.54
VPS11-208ENST00000621676 ZSWIM2Q8NEG5 633 aa11.7□□□□□ -0.54
VPS11-208ENST00000621676 CLEC4DQ8WXI8 215 aa11.7□□□□□ -0.54
VPS11-208ENST00000621676 LENG1Q96BZ8 264 aaPredicted RBP11.7□□□□□ -0.54
VPS11-208ENST00000621676 KIAA1683Q9H0B3 1180 aa11.7□□□□□ -0.54
VPS11-208ENST00000621676 SLC38A10Q9HBR0 1119 aa11.7□□□□□ -0.54
VPS11-208ENST00000621676 NAV1Q8NEY1 1877 aa11.7□□□□□ -0.54
VPS11-208ENST00000621676 KLRC4O43908 158 aa11.7□□□□□ -0.54
VPS11-208ENST00000621676 SPATA31C1P0DKV0 1188 aa11.7□□□□□ -0.54
VPS11-208ENST00000621676 IREB2P48200 963 aaKnown RBP11.7□□□□□ -0.54
VPS11-208ENST00000621676 ODR4Q5SWX8 454 aa11.7□□□□□ -0.54
VPS11-208ENST00000621676 LMBRD2Q68DH5 695 aaPredicted RBP11.7□□□□□ -0.54
VPS11-208ENST00000621676 DAGLBQ8NCG7 672 aa11.7□□□□□ -0.54
VPS11-208ENST00000621676 TRAPPC12Q8WVT3 735 aa11.7□□□□□ -0.54
VPS11-208ENST00000621676 ASCC2Q9H1I8 757 aaPredicted RBP11.7□□□□□ -0.54
VPS11-208ENST00000621676 SEMA6BQ9H3T3 888 aa11.7□□□□□ -0.54
VPS11-208ENST00000621676 AS3MTQ9HBK9 375 aa11.7□□□□□ -0.54
VPS11-208ENST00000621676 PDGFCQ9NRA1 345 aa11.7□□□□□ -0.54
VPS11-208ENST00000621676 GABBR1Q9UBS5 961 aa11.7□□□□□ -0.54
VPS11-208ENST00000621676 CPA4Q9UI42 421 aa11.7□□□□□ -0.54
VPS11-208ENST00000621676 SLITRK3O94933 977 aa11.7□□□□□ -0.54
VPS11-208ENST00000621676 TNNT1P13805 278 aa11.7□□□□□ -0.54
VPS11-208ENST00000621676 CASP4P49662 377 aa11.7□□□□□ -0.54
VPS11-208ENST00000621676 FXR1P51114 621 aaKnown RBP eCLIP11.7□□□□□ -0.54
VPS11-208ENST00000621676 CYP27A1Q02318 531 aa11.7□□□□□ -0.54
VPS11-208ENST00000621676 ZNF658Q5TYW1 1059 aaPredicted RBP11.7□□□□□ -0.54
VPS11-208ENST00000621676 FBXO16Q8IX29 292 aaPredicted RBP11.7□□□□□ -0.54
VPS11-208ENST00000621676 CCDC127Q96BQ5 260 aa11.7□□□□□ -0.54
VPS11-208ENST00000621676 AGPAT5Q9NUQ2 364 aa11.7□□□□□ -0.54
VPS11-208ENST00000621676 CDK5RAP2Q96SN8 1893 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms