RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 PPFIA4O75335 1185 aa16■□□□□ 0.15
SHROOM1-208ENST00000617339 NBPF9Q3BBW0 867 aa16■□□□□ 0.15
SHROOM1-208ENST00000617339 PPP1R3FQ6ZSY5 799 aaPredicted RBP16■□□□□ 0.15
SHROOM1-208ENST00000617339 C15orf52Q6ZUT6 534 aaKnown RBP16■□□□□ 0.15
SHROOM1-208ENST00000617339 GPBP1Q86WP2 473 aa16■□□□□ 0.15
SHROOM1-208ENST00000617339 FBXO11Q86XK2 927 aa16■□□□□ 0.15
SHROOM1-208ENST00000617339 KSR1Q8IVT5 923 aa16■□□□□ 0.15
SHROOM1-208ENST00000617339 KIAA0895Q8NCT3 520 aa16■□□□□ 0.15
SHROOM1-208ENST00000617339 ANO3Q9BYT9 981 aa16■□□□□ 0.15
SHROOM1-208ENST00000617339 ERLIN2O94905 339 aa16■□□□□ 0.15
SHROOM1-208ENST00000617339 GRM1Q13255 1194 aa16■□□□□ 0.15
SHROOM1-208ENST00000617339 STRIP1Q5VSL9 837 aa16■□□□□ 0.15
SHROOM1-208ENST00000617339 HHIPL2Q6UWX4 724 aa16■□□□□ 0.15
SHROOM1-208ENST00000617339 TPH2Q8IWU9 490 aa16■□□□□ 0.15
SHROOM1-208ENST00000617339 BLOC1S4Q9NUP1 217 aa16■□□□□ 0.15
SHROOM1-208ENST00000617339 KBTBD4Q9NVX7 518 aa16■□□□□ 0.15
SHROOM1-208ENST00000617339 CTTNQ14247 550 aaKnown RBP15.99■□□□□ 0.15
SHROOM1-208ENST00000617339 RDH13Q8NBN7 331 aa15.99■□□□□ 0.15
SHROOM1-208ENST00000617339 P2RX7Q99572 595 aaKnown RBP15.99■□□□□ 0.15
SHROOM1-208ENST00000617339 NAPGQ99747 312 aaPredicted RBP15.99■□□□□ 0.15
SHROOM1-208ENST00000617339 CLEC11AQ9Y240 323 aa15.99■□□□□ 0.15
SHROOM1-208ENST00000617339 DOCK2Q92608 1830 aa15.99■□□□□ 0.15
SHROOM1-208ENST00000617339 H7C1D1 291 aa15.99■□□□□ 0.15
SHROOM1-208ENST00000617339 TDRD12Q587J7 1177 aaKnown RBP15.99■□□□□ 0.15
SHROOM1-208ENST00000617339 GALNT17Q6IS24 598 aa15.99■□□□□ 0.15
SHROOM1-208ENST00000617339 MMS22LQ6ZRQ5 1243 aa15.99■□□□□ 0.15
SHROOM1-208ENST00000617339 MB21D1Q8N884 522 aa15.99■□□□□ 0.15
SHROOM1-208ENST00000617339 GBP3Q9H0R5 595 aa15.99■□□□□ 0.15
SHROOM1-208ENST00000617339 SEMA6BQ9H3T3 888 aa15.99■□□□□ 0.15
SHROOM1-208ENST00000617339 ABHD10Q9NUJ1 306 aa15.99■□□□□ 0.15
SHROOM1-208ENST00000617339 BMP3P12645 472 aa15.99■□□□□ 0.15
SHROOM1-208ENST00000617339 RNASE9P60153 205 aaKnown RBP15.99■□□□□ 0.15
SHROOM1-208ENST00000617339 CC2D2BQ6DHV5 1058 aa15.99■□□□□ 0.15
SHROOM1-208ENST00000617339 CNGA4Q8IV77 575 aa15.99■□□□□ 0.15
SHROOM1-208ENST00000617339 HNRNPLLQ8WVV9 542 aaKnown RBP15.99■□□□□ 0.15
SHROOM1-208ENST00000617339 HAS1Q92839 578 aa15.99■□□□□ 0.15
SHROOM1-208ENST00000617339 CCSER1Q9C0I3 900 aa15.99■□□□□ 0.15
SHROOM1-208ENST00000617339 SWAP70Q9UH65 585 aa15.99■□□□□ 0.15
SHROOM1-208ENST00000617339 GPATCH4Q5T3I0 446 aaKnown RBP15.98■□□□□ 0.15
SHROOM1-208ENST00000617339 MCTP2Q6DN12 878 aa15.98■□□□□ 0.15
SHROOM1-208ENST00000617339 CACNA2D4Q7Z3S7 1137 aa15.98■□□□□ 0.15
SHROOM1-208ENST00000617339 SIAH1Q8IUQ4 282 aa15.98■□□□□ 0.15
SHROOM1-208ENST00000617339 EFCAB13Q8IY85 973 aa15.98■□□□□ 0.15
SHROOM1-208ENST00000617339 MSANTD4Q8NCY6 345 aa15.98■□□□□ 0.15
SHROOM1-208ENST00000617339 SUPT20HQ8NEM7 779 aa15.98■□□□□ 0.15
SHROOM1-208ENST00000617339 ZDHHC15Q96MV8 337 aa15.98■□□□□ 0.15
SHROOM1-208ENST00000617339 PANK4Q9NVE7 773 aa15.98■□□□□ 0.15
SHROOM1-208ENST00000617339 RAB21Q9UL25 225 aa15.98■□□□□ 0.15
SHROOM1-208ENST00000617339 CENPFP49454 3210 aa15.98■□□□□ 0.15
SHROOM1-208ENST00000617339 MYH15Q9Y2K3 1946 aa15.98■□□□□ 0.15
SHROOM1-208ENST00000617339 EDIL3O43854 480 aa15.98■□□□□ 0.15
SHROOM1-208ENST00000617339 IPO7O95373 1038 aaKnown RBP15.98■□□□□ 0.15
SHROOM1-208ENST00000617339 EPS15P42566 896 aa15.98■□□□□ 0.15
SHROOM1-208ENST00000617339 DALRD3Q5D0E6 543 aaKnown RBP15.98■□□□□ 0.15
SHROOM1-208ENST00000617339 CCDC122Q5T0U0 273 aa15.98■□□□□ 0.15
SHROOM1-208ENST00000617339 KAT2BQ92831 832 aa15.98■□□□□ 0.15
SHROOM1-208ENST00000617339 DUSP9Q99956 384 aaKnown RBP15.98■□□□□ 0.15
SHROOM1-208ENST00000617339 PIM2Q9P1W9 311 aa15.98■□□□□ 0.15
SHROOM1-208ENST00000617339 BCORQ6W2J9 1755 aa15.98■□□□□ 0.15
SHROOM1-208ENST00000617339 CLIC2O15247 247 aa15.98■□□□□ 0.15
SHROOM1-208ENST00000617339 MYCNP04198 464 aaPredicted RBP15.98■□□□□ 0.15
SHROOM1-208ENST00000617339 KIAA1755Q5JYT7 1200 aa15.98■□□□□ 0.15
SHROOM1-208ENST00000617339 NSMFQ6X4W1 530 aa15.98■□□□□ 0.15
SHROOM1-208ENST00000617339 RRAGAQ7L523 313 aa15.98■□□□□ 0.15
SHROOM1-208ENST00000617339 GIMAP8Q8ND71 665 aaPredicted RBP15.98■□□□□ 0.15
SHROOM1-208ENST00000617339 ZNHIT6Q9NWK9 470 aaKnown RBP15.98■□□□□ 0.15
SHROOM1-208ENST00000617339 ARHGAP4P98171 946 aa15.97■□□□□ 0.15
SHROOM1-208ENST00000617339 RIC8AQ9NPQ8 531 aa15.97■□□□□ 0.15
SHROOM1-208ENST00000617339 COL5A3P25940 1745 aaPredicted RBP15.97■□□□□ 0.15
SHROOM1-208ENST00000617339 SPAG1Q07617 926 aa15.97■□□□□ 0.15
SHROOM1-208ENST00000617339 TMC4Q7Z404 712 aa15.97■□□□□ 0.15
SHROOM1-208ENST00000617339 PYM1Q9BRP8 204 aaKnown RBP15.97■□□□□ 0.15
SHROOM1-208ENST00000617339 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.97■□□□□ 0.15
SHROOM1-208ENST00000617339 AMNQ9BXJ7 453 aa15.97■□□□□ 0.15
SHROOM1-208ENST00000617339 EPN1Q9Y6I3 576 aaPredicted RBP15.97■□□□□ 0.15
SHROOM1-208ENST00000617339 LAMB2P55268 1798 aa15.97■□□□□ 0.15
SHROOM1-208ENST00000617339 H0YHG0 523 aa15.96■□□□□ 0.15
SHROOM1-208ENST00000617339 EGFRP00533 1210 aa15.96■□□□□ 0.15
SHROOM1-208ENST00000617339 GGCXP38435 758 aa15.96■□□□□ 0.15
SHROOM1-208ENST00000617339 CCDC91Q7Z6B0 441 aa15.96■□□□□ 0.15
SHROOM1-208ENST00000617339 CAGE1Q8TC20 777 aa15.96■□□□□ 0.15
SHROOM1-208ENST00000617339 A0A087WUV0 522 aaPredicted RBP15.96■□□□□ 0.15
SHROOM1-208ENST00000617339 RSPH10B2B2RC85 870 aa15.96■□□□□ 0.15
SHROOM1-208ENST00000617339 EPHB6O15197 1021 aa15.96■□□□□ 0.15
SHROOM1-208ENST00000617339 PRPF6O94906 941 aaKnown RBP15.96■□□□□ 0.15
SHROOM1-208ENST00000617339 RSPH10BP0C881 870 aa15.96■□□□□ 0.15
SHROOM1-208ENST00000617339 DCAF17Q5H9S7 520 aaPredicted RBP15.96■□□□□ 0.15
SHROOM1-208ENST00000617339 TTI2Q6NXR4 508 aa15.96■□□□□ 0.15
SHROOM1-208ENST00000617339 CNNM4Q6P4Q7 775 aa15.96■□□□□ 0.15
SHROOM1-208ENST00000617339 OR8K1Q8NGG5 319 aa15.96■□□□□ 0.15
SHROOM1-208ENST00000617339 FAM212AQ96EL1 285 aa15.96■□□□□ 0.15
SHROOM1-208ENST00000617339 BHMT2Q9H2M3 363 aa15.96■□□□□ 0.15
SHROOM1-208ENST00000617339 KLRG2A4D1S0 409 aaPredicted RBP15.96■□□□□ 0.15
SHROOM1-208ENST00000617339 PLSCR1O15162 318 aa15.96■□□□□ 0.15
SHROOM1-208ENST00000617339 RGL2O15211 777 aa15.96■□□□□ 0.15
SHROOM1-208ENST00000617339 MED24O75448 989 aa15.96■□□□□ 0.15
SHROOM1-208ENST00000617339 SYF2O95926 243 aaKnown RBP15.96■□□□□ 0.15
SHROOM1-208ENST00000617339 CCNE1P24864 410 aa15.96■□□□□ 0.15
SHROOM1-208ENST00000617339 SYDE2Q5VT97 1194 aa15.96■□□□□ 0.15
SHROOM1-208ENST00000617339 CCDC17Q96LX7 622 aa15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 147.8 ms