RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 MAPK6Q16659 721 aa22.16■■□□□ 1.14
UPF1-207ENST00000599848 ZNF667Q5HYK9 610 aa22.16■■□□□ 1.14
UPF1-207ENST00000599848 C10orf76Q5T2E6 689 aa22.16■■□□□ 1.14
UPF1-207ENST00000599848 OR6B2Q6IFH4 312 aa22.16■■□□□ 1.14
UPF1-207ENST00000599848 CC2D1AQ6P1N0 951 aaPredicted RBP22.16■■□□□ 1.14
UPF1-207ENST00000599848 KATNAL1Q9BW62 490 aa22.16■■□□□ 1.14
UPF1-207ENST00000599848 CLASP1Q7Z460 1538 aa22.15■■□□□ 1.14
UPF1-207ENST00000599848 INHBAP08476 426 aa22.15■■□□□ 1.14
UPF1-207ENST00000599848 DDX5P17844 614 aaKnown RBP22.15■■□□□ 1.14
UPF1-207ENST00000599848 CDR2Q01850 454 aa22.15■■□□□ 1.14
UPF1-207ENST00000599848 TMTC4Q5T4D3 741 aa22.15■■□□□ 1.14
UPF1-207ENST00000599848 TWF2Q6IBS0 349 aaKnown RBP22.15■■□□□ 1.14
UPF1-207ENST00000599848 TRIM45Q9H8W5 580 aaPredicted RBP22.15■■□□□ 1.14
UPF1-207ENST00000599848 KCNK3O14649 394 aa22.15■■□□□ 1.14
UPF1-207ENST00000599848 BRINP3Q76B58 766 aa22.15■■□□□ 1.14
UPF1-207ENST00000599848 GCOM2Q9BZD3 368 aaPredicted RBP22.15■■□□□ 1.14
UPF1-207ENST00000599848 NDUFAB1O14561 156 aa22.15■■□□□ 1.14
UPF1-207ENST00000599848 TRAPPC3O43617 180 aa22.15■■□□□ 1.14
UPF1-207ENST00000599848 MOCS3O95396 460 aa22.15■■□□□ 1.14
UPF1-207ENST00000599848 TBC1D10BQ4KMP7 808 aaPredicted RBP22.15■■□□□ 1.14
UPF1-207ENST00000599848 MIGA2Q7L4E1 593 aa22.15■■□□□ 1.14
UPF1-207ENST00000599848 CERKQ8TCT0 537 aa22.15■■□□□ 1.14
UPF1-207ENST00000599848 PARK7Q99497 189 aaKnown RBP22.15■■□□□ 1.14
UPF1-207ENST00000599848 DISP1Q96F81 1524 aa22.15■■□□□ 1.14
UPF1-207ENST00000599848 PER1O15534 1290 aaPredicted RBP22.15■■□□□ 1.14
UPF1-207ENST00000599848 KCNQ3O43525 872 aa22.15■■□□□ 1.14
UPF1-207ENST00000599848 PPP6R2O75170 966 aa22.15■■□□□ 1.14
UPF1-207ENST00000599848 PAMP19021 973 aa22.15■■□□□ 1.14
UPF1-207ENST00000599848 POTEDQ86YR6 584 aa22.15■■□□□ 1.14
UPF1-207ENST00000599848 CCDC13Q8IYE1 715 aa22.15■■□□□ 1.14
UPF1-207ENST00000599848 DNAAF3Q8N9W5 541 aa22.15■■□□□ 1.14
UPF1-207ENST00000599848 PGBD1Q96JS3 809 aa22.15■■□□□ 1.14
UPF1-207ENST00000599848 CALR3Q96L12 384 aaKnown RBP22.15■■□□□ 1.14
UPF1-207ENST00000599848 SLC39A2Q9NP94 309 aa22.15■■□□□ 1.14
UPF1-207ENST00000599848 ACTN1P12814 892 aa22.14■■□□□ 1.14
UPF1-207ENST00000599848 MAPK4P31152 587 aa22.14■■□□□ 1.14
UPF1-207ENST00000599848 ARHGAP25P42331 645 aa22.14■■□□□ 1.14
UPF1-207ENST00000599848 MXI1P50539 228 aa22.14■■□□□ 1.14
UPF1-207ENST00000599848 SREBF2Q12772 1141 aa22.14■■□□□ 1.14
UPF1-207ENST00000599848 CEP120Q8N960 986 aa22.14■■□□□ 1.14
UPF1-207ENST00000599848 VPS39Q96JC1 886 aa22.14■■□□□ 1.14
UPF1-207ENST00000599848 ZSWIM6Q9HCJ5 1215 aa22.14■■□□□ 1.14
UPF1-207ENST00000599848 YWHAGP61981 247 aaKnown RBP eCLIP22.14■■□□□ 1.13
UPF1-207ENST00000599848 EEPD1Q7L9B9 569 aa22.14■■□□□ 1.13
UPF1-207ENST00000599848 PNMA8AQ86V59 439 aaPredicted RBP22.14■■□□□ 1.13
UPF1-207ENST00000599848 GJD4Q96KN9 370 aaPredicted RBP22.14■■□□□ 1.13
UPF1-207ENST00000599848 PIGSQ96S52 555 aa22.14■■□□□ 1.13
UPF1-207ENST00000599848 TLK1Q9UKI8 766 aa22.14■■□□□ 1.13
UPF1-207ENST00000599848 NDUFB9Q9Y6M9 179 aa22.14■■□□□ 1.13
UPF1-207ENST00000599848 SCINQ9Y6U3 715 aa22.14■■□□□ 1.13
UPF1-207ENST00000599848 USP17L15C9J2P7 530 aa22.14■■□□□ 1.13
UPF1-207ENST00000599848 USP17L13C9JLJ4 530 aa22.14■■□□□ 1.13
UPF1-207ENST00000599848 USP17L11C9JVI0 530 aa22.14■■□□□ 1.13
UPF1-207ENST00000599848 USP17L18D6R9N7 530 aa22.14■■□□□ 1.13
UPF1-207ENST00000599848 USP17L22D6RA61 530 aa22.14■■□□□ 1.13
UPF1-207ENST00000599848 USP17L17D6RBQ6 530 aa22.14■■□□□ 1.13
UPF1-207ENST00000599848 USP17L19D6RCP7 530 aa22.14■■□□□ 1.13
UPF1-207ENST00000599848 USP17L20D6RJB6 530 aa22.14■■□□□ 1.13
UPF1-207ENST00000599848 CHEK2O96017 543 aa22.14■■□□□ 1.13
UPF1-207ENST00000599848 CPP00450 1065 aa22.14■■□□□ 1.13
UPF1-207ENST00000599848 USP17L24Q0WX57 530 aa22.14■■□□□ 1.13
UPF1-207ENST00000599848 ORC2Q13416 577 aaPredicted RBP22.14■■□□□ 1.13
UPF1-207ENST00000599848 PIGBQ92521 554 aa22.14■■□□□ 1.13
UPF1-207ENST00000599848 STAMQ92783 540 aa22.14■■□□□ 1.13
UPF1-207ENST00000599848 MYCP01106 439 aaPredicted RBP22.14■■□□□ 1.13
UPF1-207ENST00000599848 APBA1Q02410 837 aa22.14■■□□□ 1.13
UPF1-207ENST00000599848 HERC5Q9UII4 1024 aaKnown RBP22.14■■□□□ 1.13
UPF1-207ENST00000599848 JRKLQ9Y4A0 524 aa22.14■■□□□ 1.13
UPF1-207ENST00000599848 STMN1P16949 149 aa22.13■■□□□ 1.13
UPF1-207ENST00000599848 TAF11Q15544 211 aa22.13■■□□□ 1.13
UPF1-207ENST00000599848 CCDC170Q8IYT3 715 aa22.13■■□□□ 1.13
UPF1-207ENST00000599848 TBCKQ8TEA7 893 aa22.13■■□□□ 1.13
UPF1-207ENST00000599848 CFAP43Q8NDM7 1665 aa22.13■■□□□ 1.13
UPF1-207ENST00000599848 PRPF3O43395 683 aaKnown RBP22.13■■□□□ 1.13
UPF1-207ENST00000599848 EIF2AK2P19525 551 aaKnown RBP22.13■■□□□ 1.13
UPF1-207ENST00000599848 ATP6V1E1P36543 226 aa22.13■■□□□ 1.13
UPF1-207ENST00000599848 RAPH1Q70E73 1250 aa22.13■■□□□ 1.13
UPF1-207ENST00000599848 MICALL1Q8N3F8 863 aa22.13■■□□□ 1.13
UPF1-207ENST00000599848 CCDC124Q96CT7 223 aaKnown RBP22.13■■□□□ 1.13
UPF1-207ENST00000599848 HACL1Q9UJ83 578 aa22.13■■□□□ 1.13
UPF1-207ENST00000599848 A0A0D9SFI3 127 aa22.13■■□□□ 1.13
UPF1-207ENST00000599848 A0A1W2PQ27 194 aa22.13■■□□□ 1.13
UPF1-207ENST00000599848 A0A1W2PQ64 194 aa22.13■■□□□ 1.13
UPF1-207ENST00000599848 A0A1W2PQD8 194 aa22.13■■□□□ 1.13
UPF1-207ENST00000599848 ADD1P35611 737 aaKnown RBP22.13■■□□□ 1.13
UPF1-207ENST00000599848 CDK8P49336 464 aa22.13■■□□□ 1.13
UPF1-207ENST00000599848 TKFCQ3LXA3 575 aa22.13■■□□□ 1.13
UPF1-207ENST00000599848 ACAD9Q9H845 621 aa22.13■■□□□ 1.13
UPF1-207ENST00000599848 NXF1Q9UBU9 619 aaKnown RBP22.13■■□□□ 1.13
UPF1-207ENST00000599848 FAN1Q9Y2M0 1017 aa22.13■■□□□ 1.13
UPF1-207ENST00000599848 NEMP1O14524 444 aa22.13■■□□□ 1.13
UPF1-207ENST00000599848 JAK2O60674 1132 aa22.13■■□□□ 1.13
UPF1-207ENST00000599848 KIAA1755Q5JYT7 1200 aa22.13■■□□□ 1.13
UPF1-207ENST00000599848 SLC10A5Q5PT55 438 aa22.13■■□□□ 1.13
UPF1-207ENST00000599848 SH3TC2Q8TF17 1288 aa22.13■■□□□ 1.13
UPF1-207ENST00000599848 HEXIM2Q96MH2 286 aaKnown RBP22.13■■□□□ 1.13
UPF1-207ENST00000599848 NLRP4Q96MN2 994 aa22.13■■□□□ 1.13
UPF1-207ENST00000599848 CBX8Q9HC52 389 aa22.13■■□□□ 1.13
UPF1-207ENST00000599848 C8orf34Q49A92 452 aa22.12■■□□□ 1.13
UPF1-207ENST00000599848 ZBTB7AO95365 584 aa22.12■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms