RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 RPS12P25398 132 aaKnown RBP16.09■□□□□ 0.17
VRK3-217ENST00000599538 DNM2P50570 870 aa16.09■□□□□ 0.17
VRK3-217ENST00000599538 TBC1D8BQ0IIM8 1120 aa16.09■□□□□ 0.17
VRK3-217ENST00000599538 PSMD2Q13200 908 aa16.09■□□□□ 0.17
VRK3-217ENST00000599538 TNFAIP1Q13829 316 aa16.09■□□□□ 0.17
VRK3-217ENST00000599538 SYCP1Q15431 976 aa16.09■□□□□ 0.17
VRK3-217ENST00000599538 KIF4BQ2VIQ3 1234 aa16.09■□□□□ 0.17
VRK3-217ENST00000599538 NELFCDQ8IXH7 590 aa16.09■□□□□ 0.17
VRK3-217ENST00000599538 ACRBPQ8NEB7 543 aa16.09■□□□□ 0.17
VRK3-217ENST00000599538 EIF2AK1Q9BQI3 630 aaKnown RBP16.09■□□□□ 0.17
VRK3-217ENST00000599538 NAA15Q9BXJ9 866 aaKnown RBP16.09■□□□□ 0.17
VRK3-217ENST00000599538 GTPBP4Q9BZE4 634 aaKnown RBP16.09■□□□□ 0.17
VRK3-217ENST00000599538 AGPAT5Q9NUQ2 364 aa16.09■□□□□ 0.17
VRK3-217ENST00000599538 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.09■□□□□ 0.17
VRK3-217ENST00000599538 V9GYY5 206 aaPredicted RBP16.09■□□□□ 0.17
VRK3-217ENST00000599538 ARP10275 920 aa16.09■□□□□ 0.17
VRK3-217ENST00000599538 NCBP1Q09161 790 aaKnown RBP16.09■□□□□ 0.17
VRK3-217ENST00000599538 ZCWPW2Q504Y3 356 aa16.09■□□□□ 0.17
VRK3-217ENST00000599538 HERC4Q5GLZ8 1057 aaPredicted RBP16.09■□□□□ 0.17
VRK3-217ENST00000599538 MYOCDQ8IZQ8 938 aa16.09■□□□□ 0.17
VRK3-217ENST00000599538 CPXCR1Q8N123 301 aa16.09■□□□□ 0.17
VRK3-217ENST00000599538 TTYH3Q9C0H2 523 aa16.09■□□□□ 0.17
VRK3-217ENST00000599538 ZHX3Q9H4I2 956 aa16.09■□□□□ 0.17
VRK3-217ENST00000599538 CCPG1Q9ULG6 757 aa16.09■□□□□ 0.17
VRK3-217ENST00000599538 ZBTB39O15060 712 aa16.08■□□□□ 0.16
VRK3-217ENST00000599538 CHMP2AO43633 222 aa16.08■□□□□ 0.16
VRK3-217ENST00000599538 TPM1P09493 284 aa16.08■□□□□ 0.16
VRK3-217ENST00000599538 CASP5P51878 434 aa16.08■□□□□ 0.16
VRK3-217ENST00000599538 GIT2Q14161 759 aa16.08■□□□□ 0.16
VRK3-217ENST00000599538 CTTNQ14247 550 aaKnown RBP16.08■□□□□ 0.16
VRK3-217ENST00000599538 OTOP1Q7RTM1 612 aa16.08■□□□□ 0.16
VRK3-217ENST00000599538 CCDC51Q96ER9 411 aa16.08■□□□□ 0.16
VRK3-217ENST00000599538 L2HGDHQ9H9P8 463 aa16.08■□□□□ 0.16
VRK3-217ENST00000599538 LZTFL1Q9NQ48 299 aa16.08■□□□□ 0.16
VRK3-217ENST00000599538 BMP2KQ9NSY1 1161 aaPredicted RBP16.08■□□□□ 0.16
VRK3-217ENST00000599538 CD2APQ9Y5K6 639 aa16.08■□□□□ 0.16
VRK3-217ENST00000599538 RSPH10B2B2RC85 870 aa16.07■□□□□ 0.16
VRK3-217ENST00000599538 PSMD10O75832 226 aa16.07■□□□□ 0.16
VRK3-217ENST00000599538 ICAM1P05362 532 aa16.07■□□□□ 0.16
VRK3-217ENST00000599538 CCDC175P0C221 793 aa16.07■□□□□ 0.16
VRK3-217ENST00000599538 RSPH10BP0C881 870 aa16.07■□□□□ 0.16
VRK3-217ENST00000599538 MTMR2Q13614 643 aa16.07■□□□□ 0.16
VRK3-217ENST00000599538 TRIM14Q14142 442 aa16.07■□□□□ 0.16
VRK3-217ENST00000599538 CCDC125Q86Z20 511 aa16.07■□□□□ 0.16
VRK3-217ENST00000599538 FAM114A1Q8IWE2 563 aa16.07■□□□□ 0.16
VRK3-217ENST00000599538 CCDC65Q8IXS2 484 aa16.07■□□□□ 0.16
VRK3-217ENST00000599538 SYT2Q8N9I0 419 aaPredicted RBP16.07■□□□□ 0.16
VRK3-217ENST00000599538 ERMNQ8TAM6 284 aa16.07■□□□□ 0.16
VRK3-217ENST00000599538 SCFD1Q8WVM8 642 aa16.07■□□□□ 0.16
VRK3-217ENST00000599538 CLEC4DQ8WXI8 215 aa16.07■□□□□ 0.16
VRK3-217ENST00000599538 HOOK2Q96ED9 719 aa16.07■□□□□ 0.16
VRK3-217ENST00000599538 KIAA1683Q9H0B3 1180 aa16.07■□□□□ 0.16
VRK3-217ENST00000599538 DNM3Q9UQ16 869 aa16.07■□□□□ 0.16
VRK3-217ENST00000599538 ABCB11O95342 1321 aa16.07■□□□□ 0.16
VRK3-217ENST00000599538 FRMD3A2A2Y4 597 aa16.07■□□□□ 0.16
VRK3-217ENST00000599538 GNG11P61952 73 aa16.07■□□□□ 0.16
VRK3-217ENST00000599538 LRRC63Q05C16 580 aa16.07■□□□□ 0.16
VRK3-217ENST00000599538 TRAF1Q13077 416 aa16.07■□□□□ 0.16
VRK3-217ENST00000599538 CEP55Q53EZ4 464 aa16.07■□□□□ 0.16
VRK3-217ENST00000599538 LRCH2Q5VUJ6 765 aa16.07■□□□□ 0.16
VRK3-217ENST00000599538 WDR59Q6PJI9 974 aa16.07■□□□□ 0.16
VRK3-217ENST00000599538 PRPF38AQ8NAV1 312 aaKnown RBP16.07■□□□□ 0.16
VRK3-217ENST00000599538 IL31RAQ8NI17 732 aa16.07■□□□□ 0.16
VRK3-217ENST00000599538 PIGOQ8TEQ8 1089 aa16.07■□□□□ 0.16
VRK3-217ENST00000599538 ZKSCAN4Q969J2 545 aaPredicted RBP16.07■□□□□ 0.16
VRK3-217ENST00000599538 SLF1Q9BQI6 1058 aa16.07■□□□□ 0.16
VRK3-217ENST00000599538 REEP2Q9BRK0 252 aa16.07■□□□□ 0.16
VRK3-217ENST00000599538 BHMT2Q9H2M3 363 aa16.07■□□□□ 0.16
VRK3-217ENST00000599538 RAVER2Q9HCJ3 691 aaKnown RBP16.07■□□□□ 0.16
VRK3-217ENST00000599538 HOMER2Q9NSB8 354 aa16.07■□□□□ 0.16
VRK3-217ENST00000599538 EMILIN3Q9NT22 766 aa16.07■□□□□ 0.16
VRK3-217ENST00000599538 CAPN11Q9UMQ6 739 aa16.07■□□□□ 0.16
VRK3-217ENST00000599538 PHLPP2Q6ZVD8 1323 aa16.07■□□□□ 0.16
VRK3-217ENST00000599538 LTBP3Q9NS15 1303 aa16.07■□□□□ 0.16
VRK3-217ENST00000599538 EPHB6O15197 1021 aa16.06■□□□□ 0.16
VRK3-217ENST00000599538 WDR46O15213 610 aaKnown RBP16.06■□□□□ 0.16
VRK3-217ENST00000599538 CTNND1O60716 968 aaKnown RBP16.06■□□□□ 0.16
VRK3-217ENST00000599538 KRT18P05783 430 aaKnown RBP16.06■□□□□ 0.16
VRK3-217ENST00000599538 MUM1L1Q5H9M0 696 aa16.06■□□□□ 0.16
VRK3-217ENST00000599538 CCDC155Q8N6L0 562 aa16.06■□□□□ 0.16
VRK3-217ENST00000599538 TRPM4Q8TD43 1214 aa16.06■□□□□ 0.16
VRK3-217ENST00000599538 SLC5A5Q92911 643 aa16.06■□□□□ 0.16
VRK3-217ENST00000599538 WNK4Q96J92 1243 aa16.06■□□□□ 0.16
VRK3-217ENST00000599538 HSD17B14Q9BPX1 270 aa16.06■□□□□ 0.16
VRK3-217ENST00000599538 RUSC1Q9BVN2 902 aa16.06■□□□□ 0.16
VRK3-217ENST00000599538 TANGO6Q9C0B7 1094 aa16.06■□□□□ 0.16
VRK3-217ENST00000599538 WRAP73Q9P2S5 460 aaPredicted RBP16.06■□□□□ 0.16
VRK3-217ENST00000599538 LUC7L2Q9Y383 392 aaKnown RBP16.06■□□□□ 0.16
VRK3-217ENST00000599538 SLC26A4O43511 780 aa16.06■□□□□ 0.16
VRK3-217ENST00000599538 SLITRK3O94933 977 aa16.06■□□□□ 0.16
VRK3-217ENST00000599538 ITGB5P18084 799 aa16.06■□□□□ 0.16
VRK3-217ENST00000599538 VCAM1P19320 739 aa16.06■□□□□ 0.16
VRK3-217ENST00000599538 HSD17B4P51659 736 aa16.06■□□□□ 0.16
VRK3-217ENST00000599538 SPP2Q13103 211 aa16.06■□□□□ 0.16
VRK3-217ENST00000599538 VWA3BQ502W6 1294 aa16.06■□□□□ 0.16
VRK3-217ENST00000599538 TMTC1Q8IUR5 882 aa16.06■□□□□ 0.16
VRK3-217ENST00000599538 OR8K1Q8NGG5 319 aa16.06■□□□□ 0.16
VRK3-217ENST00000599538 DYDC2Q96IM9 177 aa16.06■□□□□ 0.16
VRK3-217ENST00000599538 DNAJC7Q99615 494 aa16.06■□□□□ 0.16
VRK3-217ENST00000599538 KCTD10Q9H3F6 313 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms